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May 25, 2021 14:40
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An attempt at modelling the process behind https://evolbiol.peercommunityin.org/articles/rec?id=79
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@base <http://localhost:1234/> . | |
@prefix cito: <http://purl.org/spar/cito/> . | |
@prefix dcterms: <http://purl.org/dc/terms/> . | |
@prefix fabio: <http://purl.org/spar/fabio/> . | |
@prefix foaf: <http://xmlns.com/foaf/0.1/> . | |
@prefix frbr: <http://purl.org/vocab/frbr/core#> . | |
@prefix owl: <http://www.w3.org/2002/07/owl#> . | |
@prefix part: <http://www.ontologydesignpatterns.org/cp/owl/participation.owl#> . | |
@prefix prism: <http://prismstandard.org/namespaces/basic/2.0/> . | |
@prefix pro: <http://purl.org/spar/pro/> . | |
@prefix pso: <http://purl.org/spar/pso/> . | |
@prefix pwo: <http://purl.org/spar/pwo/> . | |
@prefix taskex: <http://www.ontologydesignpatterns.org/cp/owl/taskexecution.owl#> . | |
@prefix ti: <http://www.ontologydesignpatterns.org/cp/owl/timeinterval.owl#> . | |
@prefix tisit: <http://www.ontologydesignpatterns.org/cp/owl/timeindexedsituation.owl#> . | |
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | |
# The preprint itself | |
<pleistocene-climate-change> | |
a fabio:ResearchPaper ; | |
. | |
<10.1101/149617v1> | |
a fabio:Article ; | |
prism:doi "10.1101/149617" ; | |
prism:publicationDate "2017-06-13"^^xsd:date ; | |
prism:versionIdentifier "1" ; | |
dcterms:title "Pleistocene climate change and the formation of regional species pools" ; | |
frbr:realizationOf <pleistocene-climate-change> ; | |
. | |
<10.1101/149617v2> | |
a fabio:Article ; | |
prism:doi "10.1101/149617" ; | |
prism:publicationDate "2018-02-13"^^xsd:date ; | |
prism:versionIdentifier "2" ; | |
dcterms:title "Pleistocene climate change and the formation of regional species pools" ; | |
frbr:realizationOf <pleistocene-climate-change> ; | |
. | |
<10.1101/149617v3> | |
a fabio:Article ; | |
prism:doi "10.1101/149617" ; | |
prism:publicationDate "2018-05-11"^^xsd:date ; | |
prism:versionIdentifier "3" ; | |
dcterms:title "Pleistocene climate change and the formation of regional species pools" ; | |
frbr:realizationOf <pleistocene-climate-change> ; | |
. | |
<10.1101/149617v4> | |
a fabio:Article ; | |
prism:doi "10.1101/149617" ; | |
prism:publicationDate "2018-06-04"^^xsd:date ; | |
prism:versionIdentifier "4" ; | |
dcterms:title "Pleistocene climate change and the formation of regional species pools" ; | |
frbr:realizationOf <pleistocene-climate-change> ; | |
. | |
# The published recommendation of the preprint | |
<pci-evolbio-79> | |
a fabio:ReviewArticle ; | |
prism:doi "10.24072/pci.evolbiol.100053" ; | |
prism:publicationDate "2020-07-29"^^xsd:date ; | |
dcterms:title "Recent assembly of European biogeographic species pool" ; | |
frbr:realizationOf [ | |
a fabio:Review ; | |
cito:citesAsRecommendedReading <pleistocene-climate-change> ; | |
cito:reviews <10.1101/149617v3> | |
] ; | |
pro:isDocumentContextFor <fabien-condamine> ; | |
. | |
# Round 1 | |
<pci-evolbio-79-round-1-review-1> | |
a fabio:Comment ; | |
dcterms:created "2017-11-28T15:59:00Z"^^xsd:dateTime ; | |
frbr:realizationOf [ | |
a fabio:Review ; | |
cito:reviews <10.1101/149617v1> | |
] ; | |
. | |
<pci-evolbio-79-round-1-review-2> | |
a fabio:Comment ; | |
dcterms:created "2017-11-28T15:59:00Z"^^xsd:dateTime ; | |
frbr:realizationOf [ | |
a fabio:Review ; | |
cito:reviews <10.1101/149617v1> | |
] ; | |
. | |
<pci-evolbio-79-round-1-review-3> | |
a fabio:Comment ; | |
dcterms:created "2017-11-28T15:59:00Z"^^xsd:dateTime ; | |
frbr:realizationOf [ | |
a fabio:Review ; | |
cito:reviews <10.1101/149617v1> | |
] ; | |
. | |
<pci-evolbio-79-round-1-decision> | |
a fabio:Letter ; | |
frbr:realizationOf [ | |
a fabio:Opinion ; | |
cito:reviews <10.1101/149617v1> ; | |
cito:extends <pci-evolbio-79-round-1-review-1> , <pci-evolbio-79-round-1-review-2> , <pci-evolbio-79-round-1-review-3> ; | |
] ; | |
pro:isDocumentContextFor <fabien-condamine> ; | |
. | |
<pci-evolbio-79-round-1-reply> | |
a fabio:Letter ; | |
dcterms:created "2018-02-13"^^xsd:date ; | |
frbr:realizationOf [ | |
a fabio:Reply ; | |
cito:repliesTo <pci-evolbio-79-round-1-decision> ; | |
] ; | |
. | |
# Round 2 | |
<pci-evolbio-79-round-2-review-1> | |
a fabio:Comment ; | |
dcterms:created "2018-02-21T18:43:00Z"^^xsd:dateTime ; | |
frbr:realizationOf [ | |
a fabio:Review ; | |
cito:reviews <10.1101/149617v2> | |
] ; | |
. | |
<pci-evolbio-79-round-2-decision> | |
a fabio:Letter ; | |
frbr:realizationOf [ | |
a fabio:Opinion ; | |
cito:reviews <10.1101/149617v2> ; | |
cito:extends <pci-evolbio-79-round-2-review-1> ; | |
] ; | |
pro:isDocumentContextFor <fabien-condamine> ; | |
. | |
<pci-evolbio-79-round-2-reply> | |
a fabio:Letter ; | |
dcterms:created "2018-05-12"^^xsd:date ; | |
frbr:realizationOf [ | |
a fabio:Reply ; | |
cito:repliesTo <pci-evolbio-79-round-2-decision> ; | |
] ; | |
. | |
# | |
# The process that it went through | |
# | |
# Step 1: Submission | |
<submission-step> | |
a pwo:Step ; | |
taskex:isExecutedIn <submission-action> ; | |
pwo:needs <10.1101/149617v1> ; | |
pwo:produces <submitted-status> ; | |
pwo:hasNextStep <round-1-review-step> ; | |
. | |
<submission-action> | |
a pwo:Action ; | |
tisit:atTime [ | |
a ti:TimeInterval ; | |
ti:hasIntervalDate "2017-06-14"^^xsd:date ; | |
] ; | |
part:hasParticipant <10.1101/149617v1> ; | |
. | |
<submitted-status> | |
a pso:StatusInTime ; | |
pso:isStatusHeldBy <10.1101/149617v1> ; | |
pso:isAcquiredAsConsequenceOf <submission-action> ; | |
pso:withStatus pso:submitted ; | |
. | |
# Step 2: Review round 1 | |
<round-1-review-step> | |
a pwo:Step ; | |
taskex:isExecutedIn <round-1-review-action> ; | |
pwo:needs <10.1101/149617v1> , <submitted-status> ; | |
pwo:produces <round-1-under-review-status> , <pci-evolbio-79-round-1-review-1> , <pci-evolbio-79-round-1-review-2> , <pci-evolbio-79-round-1-review-3> ; | |
pwo:hasPreviousStep <submission-step> ; | |
pwo:hasNextStep <round-1-decision-step> ; | |
. | |
<round-1-review-action> | |
a pwo:Action ; | |
part:hasParticipant <reviewer-1> , <reviewer-2> , <reviewer-3> , <10.1101/149617v1> ; | |
. | |
<round-1-under-review-status> | |
a pso:StatusInTime ; | |
pso:isStatusHeldBy <10.1101/149617v1> ; | |
pso:withStatus pso:under-review ; | |
. | |
# Step 3: Round 1 decision | |
<round-1-decision-step> | |
a pwo:Step ; | |
taskex:isExecutedIn <round-1-review-action> ; | |
pwo:needs <round-1-under-review-status> , <pci-evolbio-79-round-1-review-1> , <pci-evolbio-79-round-1-review-2> , <pci-evolbio-79-round-1-review-3> , <10.1101/149617v1> ; | |
pwo:produces <round-1-reviewed-status> , <pci-evolbio-79-round-1-decision> ; | |
pwo:hasPreviousStep <round-1-review-step> ; | |
pwo:hasNextStep <round-1-reply-step> ; | |
. | |
<round-1-decision-action> | |
a pwo:Action ; | |
part:hasParticipant <https://orcid.org/0000-0003-1673-9910> , <pci-evolbio-79-round-1-review-1> , <pci-evolbio-79-round-1-review-2> , <pci-evolbio-79-round-1-review-3> , <10.1101/149617v1> ; | |
. | |
<round-1-reviewed-status> | |
a pso:StatusInTime ; | |
pso:isStatusHeldBy <10.1101/149617v1> ; | |
pso:withStatus pso:reviewed ; # note this is different to pso:peer-reviewed | |
. | |
# Step 4: Review round 1 reply | |
<round-1-reply-step> | |
a pwo:Step ; | |
taskex:isExecutedIn <round-1-reply-action> ; | |
pwo:needs <round-1-reviewed-status> , <10.1101/149617v2> ; | |
pwo:produces <round-2-reply-status> , <pci-evolbio-79-round-1-reply> ; | |
pwo:hasNextStep <round-2-review-step> ; | |
. | |
<round-1-reply-action> | |
a pwo:Action ; | |
tisit:atTime [ | |
a ti:TimeInterval ; | |
ti:hasIntervalDate "2018-02-13"^^xsd:date ; | |
] ; | |
part:hasParticipant <pci-evolbio-79-round-1-reply> , <10.1101/149617v2> ; | |
. | |
<round-2-reply-status> | |
a pso:StatusInTime ; | |
pso:isStatusHeldBy <10.1101/149617v2> ; | |
pso:isAcquiredAsConsequenceOf <round-1-reply-action> ; | |
pso:withStatus pso:submitted ; | |
. | |
# Step 4: Review round 2 | |
<round-2-review-step> | |
a pwo:Step ; | |
taskex:isExecutedIn <round-2-review-action> ; | |
pwo:needs <round-2-reply-status> , <10.1101/149617v2> , <submitted-status> ; | |
pwo:produces <round-2-under-review-status> , <pci-evolbio-79-round-2-review-1> ; | |
pwo:hasPreviousStep <round-1-reply-step> ; | |
pwo:hasNextStep <round-2-decision-step> ; | |
. | |
<round-2-review-action> | |
a pwo:Action ; | |
part:hasParticipant <reviewer-1> , <10.1101/149617v2> ; | |
. | |
<round-2-under-review-status> | |
a pso:StatusInTime ; | |
pso:isStatusHeldBy <10.1101/149617v2> ; | |
pso:withStatus pso:under-review ; | |
. | |
# Step 5: Round 2 decision | |
<round-2-decision-step> | |
a pwo:Step ; | |
taskex:isExecutedIn <round-2-review-action> ; | |
pwo:needs <round-2-under-review-status> , <pci-evolbio-79-round-2-review-1> , <10.1101/149617v2> ; | |
pwo:produces <round-2-reviewed-status> , <pci-evolbio-79-round-2-decision> ; | |
pwo:hasPreviousStep <round-2-review-step> ; | |
pwo:hasNextStep <round-2-review-step> ; | |
. | |
<round-2-decision-action> | |
a pwo:Action ; | |
part:hasParticipant <https://orcid.org/0000-0003-1673-9910> , <pci-evolbio-79-round-2-review-1> , <10.1101/149617v2> ; | |
. | |
<round-2-reviewed-status> | |
a pso:StatusInTime ; | |
pso:isStatusHeldBy <10.1101/149617v2> ; | |
pso:withStatus pso:peer-reviewed ; | |
. | |
# | |
# People involved | |
# | |
<fabien-condamine> | |
a pro:RoleInTime ; | |
pro:isHeldBy [ | |
a foaf:Person ; | |
foaf:givenName "Fabien" ; | |
foaf:familyName "Condamine" ; | |
owl:sameAs <https://orcid.org/0000-0003-1673-9910> ; | |
] ; | |
pro:withRole pro:author ; | |
. | |
<reviewer-1> | |
a frbr:Person ; | |
. | |
<reviewer-2> | |
a frbr:Person ; | |
. | |
<reviewer-3> | |
a frbr:Person ; | |
. |
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