thomasaarholt

(/shared/users/thomasaar/py37) /shared/users/thomasaar/downloads/q-e-gpu-qe-gpu-6.4.1a1: ./configure --with-cuda=/opt/pgi/linux86-64/2018/cuda/9.2/bin --with-cuda-runtime=9.2 --with-cuda-cc=7.5 --enable-openmp --with-scalapack=no --prefix=/shared/users/thomasaar/compiled/q-e-gpu
checking build system type... x86_64-pc-linux-gnu
checking ARCH... x86_64
checking setting AR... ... /shared/users/thomasaar/py37/bin/x86_64-conda_cos6-linux-gnu-ar
checking setting ARFLAGS... ... ruv
checking whether the Fortran compiler works... yes
checking for Fortran compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o

thomasaarholt

import numpy as np

x = np.array([500, 500, 500, 1000, 1000, 1000, 1500])
y = np.array([1,2,3,4,5,6,7])

data = np.stack([x,y]).T

means = []
stds = []
for xi in np.unique(data[:,0]):

thomasaarholt

# Script should be applied to a single Velox emd file, where the file contains a single DCFI dataset
# that has been applied to the detector signal that one wishes to apply to the other detector signals

# A good example is using DCFI on a DF image, and then applying this correction to HAADF, BF and ABF.
import hyperspy.api as hs
import json
import h5py
import numpy as np

def get_nonDCFI_signals(list_of_signals):

thomasaarholt

(/shared/users/thomasaar/py37) /shared/users/thomasaar/downloads/q-e-gpu/install: more make.inc.in
# @configure_input@

# compilation rules

.SUFFIXES :
.SUFFIXES : .o .c .f .f90

# most fortran compilers can directly preprocess c-like directives: use
#       $(MPIF90) $(F90FLAGS) -c $<

thomasaarholt

import numpy as np

machineTime = {
    'm1': {
        'p1':20,
        'p2':np.nan,
        'p3':70,
        'p4':4,
    },

thomasaarholt

import matplotlib.pyplot as plt
import numpy as np

import sympy as sp
sp.init_printing()

E0, dE, Cc = sp.symbols('E0, dE, C_c, ')
deltaZ_sigma = Cc*dE/E0#*2*sp.sqrt(2*sp.log(2)) 

zlp = 0.9

thomasaarholt

  GNU nano 2.5.3                                           File: /shared/users/thomasaar/.profile                                                                                             
PS1='$(pwd): '
echo 'Hello Thomas - edit PATH using "profile"'
echo "YOU ARE NOT IN HOME - YOU ARE ON SHARED"
# This is a comment
echo 'Enabling environment for pyprismatic'
export CPLUS_INCLUDE_PATH=/usr/local/cuda-10.0/include:$CPLUS_INCLUDE_PATH
export LD_LIBRARY_PATH=$HOME/fftw_gcc5_build/lib64:/usr/local/cuda-10.0/lib64:$HOME/prismatic_gcc5/lib:$LD_LIBRARY_PATH
export LIBRARY_PATH=$HOME/fftw_gcc5_build/lib64:/usr/local/cuda-10.0/lib64:$HOME/prismatic_gcc5/lib:$LIBRARY_PATH

thomasaarholt

"\e[A": history-search-backward
"\e[B": history-search-forward
"\e[C": forward-char
"\e[D": backward-char

thomasaarholt

from mpl_toolkits.axes_grid1 import make_axes_locatable

def colorbar(mappable):
    "mappable is img = plt.imshow()"
    ax = mappable.axes
    fig = ax.figure
    divider = make_axes_locatable(ax)
    cax = divider.append_axes("right", size="5%", pad=0.05)
    cax.aname = 'colorbar'
    return fig.colorbar(mappable, cax=cax)

thomasaarholt

from pathlib import Path
def win2lin(rpath: r"C:\Users..."):
    path = rpath.replace("\\", "/").replace(":/", "/")
    drive = path[0]
    path = Path("/mnt/") / Path(drive.lower() + path[1:])
    return path

### Example:
# >>> win2lin(r"C:\Users\myuser\Documents")
# PosixPath('/mnt/c/Users/myuser/Documents')