timchurches

---
title: "t-SNE example using R"
output: html_notebook
---

This is an [R Markdown](http://rmarkdown.rstudio.com) Notebook. Execute each code chunk in sequence by clicking the *Run* button within the chunk or by placing your cursor inside it and pressing *Cmd+Shift+Enter*.

The material here is based largely on [this post](https://datavizpyr.com/how-to-make-tsne-plot-in-r/) on the excellent (although advertisement-infested) _Data Viz with Python and R_ blog. 

You may have to install several of the packages listed below (they are all on CRAN). RStudio may automatically prompt you to do so if you are running a recent version.

timchurches

---
title: "“COVOID”: A flexible, freely available stochastic individual contact model for exploring COVID-19 intervention and control strategies"
author: "Tim Churches & Louisa Jorm"
date: 2020-03-30
output:
  html_document:
    self_contained: true

references:
  

timchurches

---
title: COVOID: A flexible, freely available stochastic individual contact model for exploring COVID-19 intervention and control strategies
author: Tim Churches
date: '2020-03-30'
slug: covoid-simulating-covid-19-interventions-with-r
categories:
  - R Language
  - Guest Post
  - Applications
  - Medicine

timchurches

control.icm <- function(type, nsteps, nsims = 1, 
                        rec.rand = TRUE, quar.rand = TRUE, hosp.rand = TRUE, disch.rand = TRUE,
                        fat.rand = TRUE, a.rand = TRUE, d.rand = TRUE, initialize.FUN = initialize.icm,
                        infection.FUN = infection.icm, recovery.FUN = recovery.icm,
                        departures.FUN = departures.icm, arrivals.FUN = arrivals.icm,
                        get_prev.FUN = get_prev.icm, verbose = FALSE,
                        verbose.int = 0, skip.check = FALSE, ncores=1, ...) {

  # Get arguments
  p <- list()

timchurches

---
title: "Visualising co-authorship networks using ORCID"
author: "Tim Churches"
date: "Mon 23rd October, 2017"
output: html_notebook
---

## Pre-amble

This R notebook re-uses code by Simon Goring described in [this blog entry](https://downwithtime.wordpress.com/2015/02/12/building-your-network-using-orcid-and-ropensci/) and published [here](https://github.com/SimonGoring/ORCiD_Network/blob/master/rorcid_network.R), and combines it with the [visNetwork package](http://datastorm-open.github.io/visNetwork/). 

timchurches

test of Leaflet

timchurches

test of Leaflet