Created
August 15, 2013 23:45
-
-
Save timothyjlaurent/6246010 to your computer and use it in GitHub Desktop.
How to process arbitrarily named files with Sun Grid Engine. Prior to this I would rename the files something numeric so that Q SUb could detect it... This was also very annoying because SGE doesn't like prepending 0's... This gets around all of that and allowing you to process any pattern of files with SGE without renaming
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| cd ${fastaDir} | |
| fs=(`ls *.fa`) | |
| i=$(expr ${SGE_TASK_ID} - 1) | |
| f=${fs[$i]} | |
| process $f |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment