Tensorflow build failure log(with bazel 0.15.0) and Dockerfile

Dockerfile

FROM linaro/base-arm64-ubuntu:xenial

COPY sources.list /etc/apt/sources.list


RUN apt-get update && apt-get install -y  --no-install-recommends \
    build-essential \
    curl \
    libfreetype6-dev \
    libhdf5-dev \
    libpng12-dev \
    libzmq3-dev \
    pkg-config \
    python \
    python-dev \
    rsync \
    software-properties-common \
    unzip \
    python3 \
    python3-dev \
    python3-pip \
    python3-setuptools \
    python3-numpy \
    python3-wheel \
    wget \
    zip \
    unzip \
    openjdk-8-jdk \
    git \
    && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*

# install bazel
RUN cd ~/ && wget https://github.com/bazelbuild/bazel/releases/download/0.15.0/bazel-0.15.0-dist.zip &&  unzip bazel-0.15.0-dist.zip -d bazel && rm bazel-0.15.0-dist.zip && cd ~/bazel && ./compile.sh && cp output/bazel /usr/local/bin/bazel && cd ~/ && rm -rf ~/bazel

RUN cd ~/ && git clone https://github.com/tensorflow/tensorflow


WORKDIR "/root/"
CMD ["/bin/bash"]

sources.list

deb http://ports.ubuntu.com xenial main restricted universe multiverse
deb-src http://ports.ubuntu.com xenial main restricted universe multiverse

deb http://ports.ubuntu.com xenial-updates main restricted universe multiverse
deb-src http://ports.ubuntu.com xenial-updates main restricted universe multiverse

tensorflow_build_failure.log

root@cbe112747f7d:~# ./buildtf.sh $HOME/tensorflow/
WARNING: Running Bazel server needs to be killed, because the startup options are different.
WARNING: --batch mode is deprecated. Please instead explicitly shut down your Bazel server using the command "bazel shutdown".
You have bazel 0.15.0- (@non-git) installed.
Preconfigured Bazel build configs. You can use any of the below by adding "--config=<>" to your build command. See tools/bazel.rc for more details.
        --config=mkl            # Build with MKL support.
        --config=monolithic     # Config for mostly static monolithic build.
Configuration finished
Starting local Bazel server and connecting to it...
.........................................................
WARNING: /root/.cache/bazel/_bazel_root/efb88f6336d9c4a18216fb94287b8d97/external/grpc/BUILD:1992:1: in srcs attribute of cc_library rule @grpc//:grpc_nanopb: please do not import '@grpc//third_party/nanopb:pb_common.c' directly. You should either move the file to this package or depend on an appropriate rule there. Since this rule was created by the macro 'grpc_generate_one_off_targets', the error might have been caused by the macro implementation in /root/.cache/bazel/_bazel_root/efb88f6336d9c4a18216fb94287b8d97/external/grpc/bazel/grpc_build_system.bzl:172:12
WARNING: /root/.cache/bazel/_bazel_root/efb88f6336d9c4a18216fb94287b8d97/external/grpc/BUILD:1992:1: in srcs attribute of cc_library rule @grpc//:grpc_nanopb: please do not import '@grpc//third_party/nanopb:pb_decode.c' directly. You should either move the file to this package or depend on an appropriate rule there. Since this rule was created by the macro 'grpc_generate_one_off_targets', the error might have been caused by the macro implementation in /root/.cache/bazel/_bazel_root/efb88f6336d9c4a18216fb94287b8d97/external/grpc/bazel/grpc_build_system.bzl:172:12
WARNING: /root/.cache/bazel/_bazel_root/efb88f6336d9c4a18216fb94287b8d97/external/grpc/BUILD:1992:1: in srcs attribute of cc_library rule @grpc//:grpc_nanopb: please do not import '@grpc//third_party/nanopb:pb_encode.c' directly. You should either move the file to this package or depend on an appropriate rule there. Since this rule was created by the macro 'grpc_generate_one_off_targets', the error might have been caused by the macro implementation in /root/.cache/bazel/_bazel_root/efb88f6336d9c4a18216fb94287b8d97/external/grpc/bazel/grpc_build_system.bzl:172:12
WARNING: /root/tensorflow/tensorflow/contrib/learn/BUILD:17:1: in py_library rule //tensorflow/contrib/learn:learn: target '//tensorflow/contrib/learn:learn' depends on deprecated target '//tensorflow/contrib/session_bundle:exporter': No longer supported. Switch to SavedModel immediately.
WARNING: /root/tensorflow/tensorflow/contrib/learn/BUILD:17:1: in py_library rule //tensorflow/contrib/learn:learn: target '//tensorflow/contrib/learn:learn' depends on deprecated target '//tensorflow/contrib/session_bundle:gc': No longer supported. Switch to SavedModel immediately.
WARNING: /root/tensorflow/tensorflow/contrib/timeseries/python/timeseries/BUILD:357:1: in py_library rule //tensorflow/contrib/timeseries/python/timeseries:ar_model: target '//tensorflow/contrib/timeseries/python/timeseries:ar_model' depends on deprecated target '//tensorflow/contrib/distributions:distributions_py': TensorFlow Distributions has migrated to TensorFlow Probability (https://github.com/tensorflow/probability). Deprecated copies remaining in tf.contrib.distributions are unmaintained, unsupported, and will be removed by late 2018. You should update all usage of `tf.contrib.distributions` to `tfp.distributions`.
WARNING: /root/tensorflow/tensorflow/contrib/timeseries/python/timeseries/state_space_models/BUILD:230:1: in py_library rule //tensorflow/contrib/timeseries/python/timeseries/state_space_models:filtering_postprocessor: target '//tensorflow/contrib/timeseries/python/timeseries/state_space_models:filtering_postprocessor' depends on deprecated target '//tensorflow/contrib/distributions:distributions_py': TensorFlow Distributions has migrated to TensorFlow Probability (https://github.com/tensorflow/probability). Deprecated copies remaining in tf.contrib.distributions are unmaintained, unsupported, and will be removed by late 2018. You should update all usage of `tf.contrib.distributions` to `tfp.distributions`.
WARNING: /root/tensorflow/tensorflow/contrib/timeseries/python/timeseries/state_space_models/BUILD:73:1: in py_library rule //tensorflow/contrib/timeseries/python/timeseries/state_space_models:kalman_filter: target '//tensorflow/contrib/timeseries/python/timeseries/state_space_models:kalman_filter' depends on deprecated target '//tensorflow/contrib/distributions:distributions_py': TensorFlow Distributions has migrated to TensorFlow Probability (https://github.com/tensorflow/probability). Deprecated copies remaining in tf.contrib.distributions are unmaintained, unsupported, and will be removed by late 2018. You should update all usage of `tf.contrib.distributions` to `tfp.distributions`.
WARNING: /root/tensorflow/tensorflow/contrib/kfac/python/ops/BUILD:80:1: in py_library rule //tensorflow/contrib/kfac/python/ops:loss_functions: target '//tensorflow/contrib/kfac/python/ops:loss_functions' depends on deprecated target '//tensorflow/contrib/distributions:distributions_py': TensorFlow Distributions has migrated to TensorFlow Probability (https://github.com/tensorflow/probability). Deprecated copies remaining in tf.contrib.distributions are unmaintained, unsupported, and will be removed by late 2018. You should update all usage of `tf.contrib.distributions` to `tfp.distributions`.
WARNING: /root/tensorflow/tensorflow/contrib/bayesflow/BUILD:17:1: in py_library rule //tensorflow/contrib/bayesflow:bayesflow_py: target '//tensorflow/contrib/bayesflow:bayesflow_py' depends on deprecated target '//tensorflow/contrib/distributions:distributions_py': TensorFlow Distributions has migrated to TensorFlow Probability (https://github.com/tensorflow/probability). Deprecated copies remaining in tf.contrib.distributions are unmaintained, unsupported, and will be removed by late 2018. You should update all usage of `tf.contrib.distributions` to `tfp.distributions`.
WARNING: /root/tensorflow/tensorflow/contrib/seq2seq/BUILD:23:1: in py_library rule //tensorflow/contrib/seq2seq:seq2seq_py: target '//tensorflow/contrib/seq2seq:seq2seq_py' depends on deprecated target '//tensorflow/contrib/distributions:distributions_py': TensorFlow Distributions has migrated to TensorFlow Probability (https://github.com/tensorflow/probability). Deprecated copies remaining in tf.contrib.distributions are unmaintained, unsupported, and will be removed by late 2018. You should update all usage of `tf.contrib.distributions` to `tfp.distributions`.
WARNING: /root/tensorflow/tensorflow/contrib/BUILD:13:1: in py_library rule //tensorflow/contrib:contrib_py: target '//tensorflow/contrib:contrib_py' depends on deprecated target '//tensorflow/contrib/distributions:distributions_py': TensorFlow Distributions has migrated to TensorFlow Probability (https://github.com/tensorflow/probability). Deprecated copies remaining in tf.contrib.distributions are unmaintained, unsupported, and will be removed by late 2018. You should update all usage of `tf.contrib.distributions` to `tfp.distributions`.
INFO: Analysed target //tensorflow/tools/pip_package:build_pip_package (305 packages loaded).
INFO: Found 1 target...
INFO: From Compiling external/snappy/snappy-sinksource.cc [for host]:
cc1plus: warning: command line option '-Wno-implicit-function-declaration' is valid for C/ObjC but not for C++
cc1plus: warning: unrecognized command line option '-Wno-shift-negative-value'
INFO: From Compiling external/snappy/snappy.cc [for host]:
cc1plus: warning: command line option '-Wno-implicit-function-declaration' is valid for C/ObjC but not for C++
cc1plus: warning: unrecognized command line option '-Wno-shift-negative-value'
INFO: From Compiling external/snappy/snappy-stubs-internal.cc [for host]:
cc1plus: warning: command line option '-Wno-implicit-function-declaration' is valid for C/ObjC but not for C++
cc1plus: warning: unrecognized command line option '-Wno-shift-negative-value'
INFO: From Compiling tensorflow/python/framework/fast_tensor_util.cpp [for host]:
In file included from bazel-out/host/genfiles/external/local_config_python/numpy_include/numpy/ndarraytypes.h:1777:0,
                 from bazel-out/host/genfiles/external/local_config_python/numpy_include/numpy/ndarrayobject.h:18,
                 from bazel-out/host/genfiles/external/local_config_python/numpy_include/numpy/arrayobject.h:4,
                 from bazel-out/host/genfiles/tensorflow/python/framework/fast_tensor_util.cpp:581:
bazel-out/host/genfiles/external/local_config_python/numpy_include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
INFO: From Compiling tensorflow/python/framework/fast_tensor_util.cpp:
In file included from bazel-out/arm-opt/genfiles/external/local_config_python/numpy_include/numpy/ndarraytypes.h:1777:0,
                 from bazel-out/arm-opt/genfiles/external/local_config_python/numpy_include/numpy/ndarrayobject.h:18,
                 from bazel-out/arm-opt/genfiles/external/local_config_python/numpy_include/numpy/arrayobject.h:4,
                 from bazel-out/arm-opt/genfiles/tensorflow/python/framework/fast_tensor_util.cpp:581:
bazel-out/arm-opt/genfiles/external/local_config_python/numpy_include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
INFO: From Compiling tensorflow/contrib/lite/context.c:
In file included from tensorflow/contrib/lite/context.c:16:0:
./tensorflow/contrib/lite/context.h:59:34: warning: 'struct TfLiteContext' declared inside parameter list
   TfLiteStatus (*Refresh)(struct TfLiteContext* context);
                                  ^
./tensorflow/contrib/lite/context.h:59:34: warning: its scope is only this definition or declaration, which is probably not what you want
ERROR: /root/tensorflow/tensorflow/contrib/lite/kernels/internal/BUILD:368:1: C++ compilation of rule '//tensorflow/contrib/lite/kernels/internal:neon_tensor_utils' failed (Exit 1): gcc failed: error executing command
  (cd /root/.cache/bazel/_bazel_root/efb88f6336d9c4a18216fb94287b8d97/execroot/org_tensorflow && \
  exec env - \
    PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin \
    PWD=/proc/self/cwd \
    PYTHON_BIN_PATH=/usr/bin/python3 \
    PYTHON_LIB_PATH=/usr/local/lib/python3.5/dist-packages \
    TF_DOWNLOAD_CLANG=0 \
    TF_NEED_CUDA=0 \
    TF_NEED_OPENCL_SYCL=0 \
  /usr/bin/gcc -U_FORTIFY_SOURCE -fstack-protector -Wall -B/usr/bin -B/usr/bin -Wunused-but-set-parameter -Wno-free-nonheap-object -fno-omit-frame-pointer -g0 -O2 '-D_FORTIFY_SOURCE=1' -DNDEBUG -ffunction-sections -fdata-sections '-std=c++0x' -MD -MF bazel-out/arm-opt/bin/tensorflow/contrib/lite/kernels/internal/_objs/neon_tensor_utils/tensorflow/contrib/lite/kernels/internal/reference/portable_tensor_utils.pic.d '-frandom-seed=bazel-out/arm-opt/bin/tensorflow/contrib/lite/kernels/internal/_objs/neon_tensor_utils/tensorflow/contrib/lite/kernels/internal/reference/portable_tensor_utils.pic.o' -fPIC -iquote . -iquote bazel-out/arm-opt/genfiles -iquote external/bazel_tools -iquote bazel-out/arm-opt/genfiles/external/bazel_tools -iquote external/arm_neon_2_x86_sse -iquote bazel-out/arm-opt/genfiles/external/arm_neon_2_x86_sse -iquote external/gemmlowp -iquote bazel-out/arm-opt/genfiles/external/gemmlowp -funsafe-math-optimizations -ftree-vectorize -fomit-frame-pointer -O3 '-mfpu=neon' -fno-canonical-system-headers -Wno-builtin-macro-redefined '-D__DATE__="redacted"' '-D__TIMESTAMP__="redacted"' '-D__TIME__="redacted"' -c tensorflow/contrib/lite/kernels/internal/reference/portable_tensor_utils.cc -o bazel-out/arm-opt/bin/tensorflow/contrib/lite/kernels/internal/_objs/neon_tensor_utils/tensorflow/contrib/lite/kernels/internal/reference/portable_tensor_utils.pic.o)
gcc: error: unrecognized command line option '-mfpu=neon'
Target //tensorflow/tools/pip_package:build_pip_package failed to build
INFO: Elapsed time: 616.406s, Critical Path: 97.69s
INFO: 774 processes: 774 local.
FAILED: Build did NOT complete successfully
Wed Jul 25 12:53:51 UTC 2018 : === Preparing sources in dir: /tmp/tmp.Kd71Ex0OWL
~/tensorflow ~/tensorflow
cp: cannot stat './protobuf_archive/python/google/protobuf/internal/_api_implementation.so': No such file or directory
root@cbe112747f7d:~#
root@cbe112747f7d:~/tensorflow# git log --decorate -1
commit bd8ee2b6aba2f99d7ca9a7af12eda62db480f355 (HEAD -> master, origin/master, origin/HEAD)
Author: Alexandre Passos <apassos@google.com>
Date:   Tue Jul 24 11:17:33 2018 -0700

    Uses separate forward and backward graphs for tfe.defun backprop.

    PiperOrigin-RevId: 205859733
root@cbe112747f7d:~/tensorflow#