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September 24, 2015 00:42
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# Run R code on 32 bit and 64 bit and get different results | |
# You need to run the code on 32 Bit R version and then the 64 bit R (not just the code below) | |
# http://stackoverflow.com/questions/17881609/parallel-randomforest-with-different-results-using-dosnow | |
# | |
library(foreach) | |
library(doSNOW) | |
library(parallel) | |
set.seed(666) | |
ncores <- 4 | |
cl <- makeCluster(ncores) | |
registerDoSNOW(cl) | |
foreach(i=1:ncores) %dopar% { | |
set.seed(666) | |
rnorm(1) | |
} | |
stopCluster(cl) | |
#---- now seed indiviual on each cluster | |
library(foreach) | |
library(doSNOW) | |
library(parallel) | |
set.seed(666) | |
ncores <- 4 | |
cl <- makeCluster(ncores) | |
registerDoSNOW(cl) | |
foreach(i=1:ncores) %dopar% { | |
set.seed(i) | |
rnorm(1) | |
} | |
stopCluster(cl) | |
#----- | |
# 64 bit R 32 bit R | |
# [[1]] [[1]] | |
# [1] 0.753311 [1] 0.8191309 | |
# | |
# [[2]] [[2]] | |
# [1] 0.753311 [1] 0.8191309 | |
# | |
# [[3]] [[3]] | |
# [1] 0.753311 [1] 0.8191309 | |
# | |
# [[4]] [[4]] | |
# [1] 0.753311 [1] 0.8191309 | |
#---------------------------------- | |
#---------------------------------- | |
#----- RF static seed ------ | |
library(foreach) | |
library(doSNOW) | |
library(parallel) | |
library(randomForest) | |
set.seed(123) | |
ncores <- 2 | |
cl <- makeCluster(ncores) | |
registerDoSNOW(cl) | |
nr <- 1000 | |
x <- matrix(runif(100000), nr) | |
y <- gl(4, nr/4) | |
trainX <- x[1:800,] | |
trainY <- y[1:800] | |
testX <- x[801:nrow(x),] | |
testY <- y[801:length(y)] | |
rf <- foreach(i=1:ncores, ntree=rep(100, ncores), .packages='randomForest', .combine=combine) %dopar% { | |
# seed for each node is same | |
set.seed(123) | |
randomForest(trainX, trainY, ntree=ntree) | |
} | |
stopCluster(cl) | |
pred <- predict(rf, new=testX) | |
pred | |
table(pred) | |
#----- RF individual seed ---------- | |
library(foreach) | |
library(doSNOW) | |
library(parallel) | |
library(randomForest) | |
set.seed(123) | |
ncores <- 2 | |
cl <- makeCluster(ncores) | |
registerDoSNOW(cl) | |
nr <- 1000 | |
x <- matrix(runif(100000), nr) | |
y <- gl(4, nr/4) | |
trainX <- x[1:800,] | |
trainY <- y[1:800] | |
testX <- x[801:nrow(x),] | |
testY <- y[801:length(y)] | |
rf <- foreach(i=1:ncores, ntree=rep(100, ncores), .packages='randomForest', .combine=combine) %dopar% { | |
# seed for each node is different | |
set.seed(i) | |
randomForest(trainX, trainY, ntree=ntree) | |
} | |
stopCluster(cl) | |
pred <- predict(rf, new=testX) | |
pred | |
table(pred) | |
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