phpbrew install php-7.2.28 +default +mcrypt +hash +exif +mbstring +zip +fileinfo +ctype +zlib +curl +xml +mysql +xmlrpc +iconv +intl +fpm +sqlite +openssl=shared -- --with-libdir=lib64
phpbrew ext install redis latest
toniher
/ pergola-webservice.py
Created Mar 7, 2019
Webservice script for using pergola through the Web
View pergola-webservice.py
| # -*- coding: utf-8 -*- | |
| """ | |
| Pergola webservice client | |
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| More details at: https://pergola.crg.eu | |
| Usage: python pergola-webservice.py myconfig.json myoutput.zip | |
| """ | |
| import requests | |
| import json | |
| import sys |
View parseGff.pl
| #!/usr/bin/env perl | |
| # List of IDs - one per line | |
| my $list = shift; | |
| # File with potential IDs, it can be GFF but also othersH | |
| my $gff = shift; | |
| my @ids; | |
| open( LIST, $list ) || die "Cannot open $list"; |
toniher
/ docker2singularity.sh
Last active Feb 2, 2020
Bash script wrapper for generating a singularity image from a local Docker image
View docker2singularity.sh
| #!/bin/bash | |
| # Based on https://github.com/sylabs/singularity/issues/1537 | |
| # Usage: bash docker2singularity.sh mydockerimg mysingularity.simg | |
| set -ueo pipefail | |
| IMG=$1 | |
| FILEOUT=$2 | |
| PORT=${3:-5000} |
toniher
/ newRecursive.php
Last active May 22, 2018
Basic recursive iterator for generating a file and directory array
View newRecursive.php
| <?php | |
| # Based on https://secure.php.net/manual/en/class.recursivedirectoryiterator.php#111142 | |
| # Based on https://stackoverflow.com/questions/834303/startswith-and-endswith-functions-in-php | |
| $hidden = false; | |
| if ( count( $argv ) > 1 ) { | |
| $ritit = new RecursiveIteratorIterator(new RecursiveDirectoryIterator($argv[1], RecursiveIteratorIterator::SELF_FIRST) ); | |
| $r = array(); |
View putingroups.pl
| #!/usr/bin/env perl | |
| use Data::Dumper; | |
| use Text::Trim; | |
| use POSIX; | |
| use List::Util qw(shuffle); | |
| my $file = shift; | |
| my @struct; | |
| my @groups; |
toniher
/ importWikiEsExtract.py
Last active Feb 4, 2018
Simple Python script for extraction es wikipedia extract text
View importWikiEsExtract.py
| import sys | |
| import requests | |
| import urllib | |
| pagename = str( ' '.join( sys.argv[1:] ) ) | |
| wikiurl = "https://es.wikipedia.org/w/api.php?action=query&format=json&titles="+urllib.quote_plus( pagename )+"&prop=extracts&exintro&explaintext&redirects=true" | |
| r = requests.get(wikiurl) |
toniher
/ Dockerfile
Created Sep 3, 2016
Example of changing uid and gid of a Docker image - MariaDB
View Dockerfile
| FROM mariadb:10.1 | |
| # To be changed here | |
| ENV MYSQL_UID 27 | |
| ENV MYSQL_GID 27 | |
| RUN usermod -u $MYSQL_UID mysql; groupmod -g $MYSQL_GID mysql; | |
| RUN chown -R mysql:mysql /var/lib/mysql /var/run/mysqld |
View hls.service
| [Unit] | |
| Description=hls: starts hls service | |
| After=nginx.service | |
| [Service] | |
| Type=forking | |
| User=www-data | |
| ExecStart=/usr/local/bin/hls.sh | |
| Restart=on-failure | |
View hls.sh
| #!/bin/bash | |
| base=/var/hls | |
| mkdir -p $base | |
| cd $base | |
| raspivid -n -w 720 -h 405 -fps 25 -vf -t 86400000 -b 1800000 -ih -o - \ | |
| | ffmpeg -y \ |
NewerOlder