My base provisioning script for a Debian server or vagrant instance

bootstrap.sh

#!/usr/bin/env bash


THE_USER="janeway"
THE_HOME="/home/$THE_USER"

apt-get update
apt-get -y upgrade
apt-get install -y --force-yes rlwrap git vim zsh build-essential silversearcher-ag automake pkg-config moreutils libevent-dev libtinfo5 libncurses5-dev apt-transport-https python-pip python-webpy ipython htop sbcl


# add recent r backport
sudo sh -c 'echo "deb http://cran.revolutionanalytics.com/bin/linux/debian jessie-cran3/" >> /etc/apt/sources.list'
apt-key adv --keyserver keys.gnupg.net --recv-key 6212B7B7931C4BB16280BA1306F90DE5381BA480

apt-get update

apt-get install -y --force-yes r-base-dev libssl-dev r-cran-rcpp libssh2-1-dev libcurl4-openssl-dev libxml2-dev

#-------------------------------------------#
# vim
git clone https://github.com/tonyfischetti/vix.git $THE_HOME/.vim
ln -s $THE_HOME/.vim/.vimrc $THE_HOME/.vimrc
git clone https://github.com/VundleVim/Vundle.vim.git $THE_HOME/.vim/bundle/Vundle.vim
echo "Dont forget to :PluginInstall"
mkdir $THE_HOME/.fonts
cp $THE_HOME/.vim/goodies/Monaco+for+Powerline+patched.otf $THE_HOME/.fonts
fc-cache -vf
#-------------------------------------------#

#-------------------------------------------#
# tmux
git clone https://github.com/tonyfischetti/tmix.git $THE_HOME/.tmux
ln -s $THE_HOME/.tmux/.tmux.conf $THE_HOME/.tmux.conf
git clone https://github.com/tonyfischetti/tmux.git $THE_HOME/tmux
cd $THE_HOME/tmux
./autogen.sh
./configure
make
make install
#-------------------------------------------#

#-------------------------------------------#
# zsh
git clone https://github.com/tonyfischetti/zix.git $THE_HOME/.zsh
ln -s $THE_HOME/.zsh/.zshrc $THE_HOME/.zshrc
chsh -s /usr/bin/zsh $THE_USER
#-------------------------------------------#

#-------------------------------------------#
# common lisp
cd /tmp/
curl -O https://beta.quicklisp.org/quicklisp.lisp
sudo -u $THE_USER -H sh -c "sbcl --load quicklisp.lisp --eval '(progn (quicklisp-quickstart:install) (quit))'"
cat <<EOF > $THE_HOME/.sbclrc
#-quicklisp
(let ((quicklisp-init (merge-pathnames "quicklisp/setup.lisp"
                                       (user-homedir-pathname))))
  (when (probe-file quicklisp-init)
    (load quicklisp-init)))
EOF
#-------------------------------------------#

#-------------------------------------------#
# R
cat <<EOF > $THE_HOME/RUN_THIS_IN_R.R
needed <- c("boot", "magrittr", "dplyr", "MASS", 
            "Rcpp", "inline", "devtools", "glmnet")

install.packages(needed, repos="http://cran.revolutionanalytics.com/")

devtools::install_github("jalvesaq/colorout")
devtools::install_github("ropenscilabs/assertr", ref="dev")
devtools::install_github("rmcelreath/rethinking")

getout <- '
.First <- function(){
  if(interactive()){
    library(utils)
    # puts a timestamp in my command history
    # file if R_HISTFILE is in environment
    timestamp(,prefix=paste("##------ [",getwd(),"] ",sep=""))

  }
}

.Last <- function(){
  if(interactive()){
    # saving my interactive command history
    # is a life saver and saved me many hours
    # of work. This will save my history to
    # the file that the environment variable
    # $R_HISTFILE points to, if it doesnt exist,
    # use ~/.RHistory
    hist_file <- Sys.getenv("R_HISTFILE")
    if(hist_file=="") hist_file <- "~/.Rhistory"
    try(savehistory(hist_file))
  }
}

library("colorout")

options(repos="http://cran.rstudio.com/")
'

sink(paste0(Sys.getenv("HOME"), "/.Rprofile"))
cat(getout)
sink()

EOF
echo "Dont forget to R installation script!"
#-------------------------------------------#


#-------------------------------------------#
# apache
apt-get install -y apache2 libapache2-mod-wsgi
a2enmod wsgi

cat <<EOF > /etc/apache2/sites-available/000-default.conf
<VirtualHost *:80>
  LoadModule wsgi_module modules/mod_wsgi.so
  WSGIScriptAlias / /var/www/html/main.py/
  Alias /static /var/www/html/static
  <Directory /var/www/html/static>
    Options Indexes FollowSymLinks Includes ExecCGI
    Require all granted
  </Directory>
  AddType text/html .py
  ErrorLog /var/log/apache2/error.log
  CustomLog /var/log/apache2/access.log combined
</VirtualHost>
# vim: syntax=apache ts=4 sw=4 sts=4 sr noet
EOF

service apache2 restart
#-------------------------------------------#

#-------------------------------------------#
# postgres
apt-get install -y postgresql postgresql-client postgresql-contrib
sudo -u postgres -H sh -c "psql -c \"ALTER ROLE postgres WITH ENCRYPTED PASSWORD 'SOME_PASSWORD'\";"
sudo -u postgres -H sh -c "psql -c \"CREATE USER $THE_USER WITH ENCRYPTED PASSWORD 'SOME_OTHER_PASSWORD'\";"
sudo -u postgres -H sh -c "psql -c \"CREATE DATABASE SOME_DATABASE_NAME WITH OWNER $THE_USER ENCODING 'UTF-8'\";"
cat /etc/postgresql/9.4/main/postgresql.conf | perl -pe "s/#listen_addresses = 'localhost'/listen_addresses = 'localhost'/g" | sponge /etc/postgresql/9.4/main/postgresql.conf
cat /etc/postgresql/9.4/main/pg_hba.conf | perl -pe "s/(local\s+all\s+)postgres\s+peer/\1postgres        peer\n\1all      md5/g" | sponge /etc/postgresql/9.4/main/pg_hba.conf
chown postgres /etc/postgresql/9.4/main/pg_hba.conf
chown postgres /etc/postgresql/9.4/main/postgresql.conf
sudo -u $THE_USER -H sh -c "psql -d THE_DATABASE_NAME -f SOME_SCHEMA_CREATION_SQL_SCRIPT.sql"

service postgresql restart
#-------------------------------------------#


chown -R $THE_USER $THE_HOME


echo "Dont forget to R installation script and ':PluginInstall' in Vim!!"