gistfile1.txt

(base) pietzsch@tomancak-mac-26:~/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm (d39889d*)$ mvn clean package                                         # 0 [22:49:37]
[INFO] Scanning for projects...
[INFO]
[INFO] -------------------< net.imglib2:imglib2-algorithm >--------------------
[INFO] Building ImgLib2 Algorithms 0.11.2
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ imglib2-algorithm ---
[INFO] Deleting /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target
[INFO]
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ imglib2-algorithm ---
[INFO] Adding ignore: module-info
[INFO] Adding ignore: META-INF/versions/*/module-info
[INFO] Adding ignore: org.apache.hadoop.yarn.*.package-info
[INFO] Adding ignore: org.apache.spark.unused.UnusedStubClass
[INFO] Adding ignore: org.hibernate.stat.ConcurrentStatisticsImpl
[INFO] Adding ignore: org.junit.runner.Runner
[INFO] Adding ignore: module-info
[INFO]
[INFO] --- build-helper-maven-plugin:3.0.0:regex-property (sanitize-version) @ imglib2-algorithm ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ imglib2-algorithm ---
[INFO] Executing: /bin/sh -c cd '/Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm
[INFO] Storing buildNumber: d39889dbfaf6b3ad656e1387b0adbb28d8259c55 at timestamp: 1586379094114
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd '/Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- scijava-maven-plugin:1.1.0:set-rootdir (set-rootdir) @ imglib2-algorithm ---
[INFO] Setting rootdir: /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm
[INFO]
[INFO] --- jacoco-maven-plugin:0.8.4:prepare-agent (jacoco-initialize) @ imglib2-algorithm ---
[INFO] argLine set to -javaagent:/Users/pietzsch/.m2/repository/org/jacoco/org.jacoco.agent/0.8.4/org.jacoco.agent-0.8.4-runtime.jar=destfile=/Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/jacoco.exec
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ imglib2-algorithm ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ imglib2-algorithm ---
[INFO] Compiling 278 source files to /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/classes
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/main/java/net/imglib2/algorithm/labeling/AllConnectedComponents.java: Some input files use or override a deprecated API.
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/main/java/net/imglib2/algorithm/labeling/AllConnectedComponents.java: Recompile with -Xlint:deprecation for details.
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/main/java/net/imglib2/algorithm/convolution/Convolution.java: Some input files use unchecked or unsafe operations.
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/main/java/net/imglib2/algorithm/convolution/Convolution.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ imglib2-algorithm ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ imglib2-algorithm ---
[INFO] Compiling 51 source files to /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/test-classes
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/test/java/tests/labeling/WatershedTest.java: Some input files use or override a deprecated API.
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/test/java/tests/labeling/WatershedTest.java: Recompile with -Xlint:deprecation for details.
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/test/java/net/imglib2/algorithm/convolution/ConcatenationTest.java: /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/test/java/net/imglib2/algorithm/convolution/ConcatenationTest.java uses unchecked or unsafe operations.
[INFO] /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/src/test/java/net/imglib2/algorithm/convolution/ConcatenationTest.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ imglib2-algorithm ---
[INFO]
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------
[INFO] Running net.imglib2.algorithm.gradient.PartialDerivativeTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.111 s - in net.imglib2.algorithm.gradient.PartialDerivativeTest
[INFO] Running net.imglib2.algorithm.kdtree.VolumetricSearchTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in net.imglib2.algorithm.kdtree.VolumetricSearchTest
[INFO] Running net.imglib2.algorithm.util.GridsTest
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in net.imglib2.algorithm.util.GridsTest
[INFO] Running net.imglib2.algorithm.util.ParallelizeOverBlocksTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.424 s - in net.imglib2.algorithm.util.ParallelizeOverBlocksTest
[INFO] Running net.imglib2.algorithm.fill.FloodFillTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.135 s - in net.imglib2.algorithm.fill.FloodFillTest
[INFO] Running net.imglib2.algorithm.labeling.ConnectedComponentAnalysisTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in net.imglib2.algorithm.labeling.ConnectedComponentAnalysisTest
[INFO] Running net.imglib2.algorithm.math.ImgMathTest
testLet3MultiVar
Multi Let sum: 11000.0
test5LT
Sum LT 1/0: 50.0
test6GT
Sum GT 1/0: 50.0
testLet2Advanced
Two Let sum: 300.0
test1IfThenElse
=== Hierarchy ===
Let "red" ->
  ImgSource
  Let "green" ->
    ImgSource
    Let "blue" ->
      ImgSource
      Let "max" ->
        Max
          Max
            "red" Var
            "green" Var
          "blue" Var
        Let "min" ->
          Min
            Min
              "red" Var
              "green" Var
            "blue" Var
          If
            Equal
              NumberSource
              "max" Var
            NumberSource
            Div
              Sub
                "max" Var
                "min" Var
              "max" Var

IfThenElse: saturation sum is 21367, expected: 21367
test1
Sum: 80.0
test2
test4
Sum: 1.0E7
testLet4NestedMultiLet
Nested multi Let sum: 19000.0
testLet1Simple
Sum Let: 100.0
[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.654 s - in net.imglib2.algorithm.math.ImgMathTest
[INFO] Running net.imglib2.algorithm.localextrema.LocalExtremaTest
[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in net.imglib2.algorithm.localextrema.LocalExtremaTest
[INFO] Running net.imglib2.algorithm.localextrema.SubpixelLocalizationTest
[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 s - in net.imglib2.algorithm.localextrema.SubpixelLocalizationTest
[INFO] Running net.imglib2.algorithm.hessian.HessianMatrixTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in net.imglib2.algorithm.hessian.HessianMatrixTest
[INFO] Running net.imglib2.algorithm.hessian.HessianMatrixEigenValuesTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in net.imglib2.algorithm.hessian.HessianMatrixEigenValuesTest
[INFO] Running net.imglib2.algorithm.hessian.ScaleAsFunctionOfPositionTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in net.imglib2.algorithm.hessian.ScaleAsFunctionOfPositionTest
[INFO] Running net.imglib2.algorithm.gauss3.SeparableSymmetricConvolutionTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in net.imglib2.algorithm.gauss3.SeparableSymmetricConvolutionTest
[INFO] Running net.imglib2.algorithm.region.EllipseTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 s - in net.imglib2.algorithm.region.EllipseTest
[INFO] Running net.imglib2.algorithm.region.CircleTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.21 s - in net.imglib2.algorithm.region.CircleTest
[INFO] Running net.imglib2.algorithm.hough.HoughLineTransformTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.133 s - in net.imglib2.algorithm.hough.HoughLineTransformTest
[INFO] Running net.imglib2.algorithm.neighborhood.PairOfPointsShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in net.imglib2.algorithm.neighborhood.PairOfPointsShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.DiamondTipsNeighorhoodTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in net.imglib2.algorithm.neighborhood.DiamondTipsNeighorhoodTest
[INFO] Running net.imglib2.algorithm.neighborhood.PeriodicLineShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in net.imglib2.algorithm.neighborhood.PeriodicLineShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.ShapeTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in net.imglib2.algorithm.neighborhood.ShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodTest
[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodTest
[INFO] Running net.imglib2.algorithm.neighborhood.SquareStrelTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.288 s - in net.imglib2.algorithm.neighborhood.SquareStrelTest
[INFO] Running net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodTest
[INFO] Running net.imglib2.algorithm.neighborhood.DiamondShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 s - in net.imglib2.algorithm.neighborhood.DiamondShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.DiamondNeighborhoodTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in net.imglib2.algorithm.neighborhood.DiamondNeighborhoodTest
[INFO] Running net.imglib2.algorithm.neighborhood.HypersphereShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in net.imglib2.algorithm.neighborhood.HypersphereShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.HorizontalLineShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in net.imglib2.algorithm.neighborhood.HorizontalLineShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.RectangleShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 s - in net.imglib2.algorithm.neighborhood.RectangleShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.DiamondTipsShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in net.imglib2.algorithm.neighborhood.DiamondTipsShapeTest
[INFO] Running net.imglib2.algorithm.neighborhood.RandomAccessiblePairWithNeighborhoodTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in net.imglib2.algorithm.neighborhood.RandomAccessiblePairWithNeighborhoodTest
[INFO] Running net.imglib2.algorithm.neighborhood.DiamondStrelTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.614 s - in net.imglib2.algorithm.neighborhood.DiamondStrelTest
[INFO] Running net.imglib2.algorithm.neighborhood.CenteredRectangleShapeTest
[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in net.imglib2.algorithm.neighborhood.CenteredRectangleShapeTest
[INFO] Running net.imglib2.algorithm.morphology.Table2dTest
[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in net.imglib2.algorithm.morphology.Table2dTest
[INFO] Running net.imglib2.algorithm.morphology.DilationTest
[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.236 s - in net.imglib2.algorithm.morphology.DilationTest
[INFO] Running net.imglib2.algorithm.morphology.distance.DistanceTransformTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.259 s - in net.imglib2.algorithm.morphology.distance.DistanceTransformTest
[INFO] Running net.imglib2.algorithm.morphology.ErosionTest
[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.254 s - in net.imglib2.algorithm.morphology.ErosionTest
[INFO] Running net.imglib2.algorithm.convolution.fast_gauss.FastGaussTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.952 s - in net.imglib2.algorithm.convolution.fast_gauss.FastGaussTest
[INFO] Running net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolutionTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolutionTest
[INFO] Running net.imglib2.algorithm.convolution.ConcatenationTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in net.imglib2.algorithm.convolution.ConcatenationTest
[INFO] Running net.imglib2.algorithm.convolution.LineConvolutionTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in net.imglib2.algorithm.convolution.LineConvolutionTest
[INFO] Running net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolutionTest
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolutionTest
[INFO] Running net.imglib2.algorithm.convolution.kernel.Kernel1DTest
[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in net.imglib2.algorithm.convolution.kernel.Kernel1DTest
[INFO] Running net.imglib2.algorithm.convolution.kernel.KernelConvolverFactoryTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in net.imglib2.algorithm.convolution.kernel.KernelConvolverFactoryTest
[INFO] Running net.imglib2.algorithm.convolution.kernel.ConvolverTest
[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in net.imglib2.algorithm.convolution.kernel.ConvolverTest
[INFO] Running net.imglib2.algorithm.integral.IntegralImgTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in net.imglib2.algorithm.integral.IntegralImgTest
[INFO] Running tests.labeling.WatershedTest
[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in tests.labeling.WatershedTest
[INFO] Running tests.labeling.ConnectedComponentsTest
[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.076 s - in tests.labeling.ConnectedComponentsTest
[INFO] Running tests.labeling.AllConnectedComponentsTest
[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s - in tests.labeling.AllConnectedComponentsTest
[INFO]
[INFO] Results:
[INFO]
[INFO] Tests run: 186, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO]
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ imglib2-algorithm ---
[INFO] Building jar: /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/imglib2-algorithm-0.11.2.jar
[INFO]
[INFO] >>> maven-source-plugin:3.1.0:jar (attach-sources-jar) > generate-sources @ imglib2-algorithm >>>
[INFO]
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ imglib2-algorithm ---
[INFO] Adding ignore: module-info
[INFO] Adding ignore: META-INF/versions/*/module-info
[INFO] Adding ignore: org.apache.hadoop.yarn.*.package-info
[INFO] Adding ignore: org.apache.spark.unused.UnusedStubClass
[INFO] Adding ignore: org.hibernate.stat.ConcurrentStatisticsImpl
[INFO] Adding ignore: org.junit.runner.Runner
[INFO] Adding ignore: module-info
[INFO]
[INFO] --- build-helper-maven-plugin:3.0.0:regex-property (sanitize-version) @ imglib2-algorithm ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ imglib2-algorithm ---
[INFO]
[INFO] --- scijava-maven-plugin:1.1.0:set-rootdir (set-rootdir) @ imglib2-algorithm ---
[INFO]
[INFO] --- jacoco-maven-plugin:0.8.4:prepare-agent (jacoco-initialize) @ imglib2-algorithm ---
[INFO] argLine set to -javaagent:/Users/pietzsch/.m2/repository/org/jacoco/org.jacoco.agent/0.8.4/org.jacoco.agent-0.8.4-runtime.jar=destfile=/Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/jacoco.exec
[INFO]
[INFO] <<< maven-source-plugin:3.1.0:jar (attach-sources-jar) < generate-sources @ imglib2-algorithm <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:3.1.0:jar (attach-sources-jar) @ imglib2-algorithm ---
[INFO] Building jar: /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/imglib2-algorithm-0.11.2-sources.jar
[INFO]
[INFO] --- jacoco-maven-plugin:0.8.4:report (jacoco-site) @ imglib2-algorithm ---
[INFO] Loading execution data file /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/jacoco.exec
[INFO] Analyzed bundle 'ImgLib2 Algorithms' with 349 classes
[INFO]
[INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ imglib2-algorithm ---
[INFO] Building jar: /Users/pietzsch/workspace/fiji/fiji/melting-pot/net.imglib2/imglib2-algorithm/target/imglib2-algorithm-0.11.2-tests.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  13.236 s
[INFO] Finished at: 2020-04-08T22:51:45+02:00
[INFO] ------------------------------------------------------------------------