config.h

/* config.h.  Generated from config.h.in by configure.  */
/* config.h.in.  Generated from configure.ac by autoheader.  */

/* Canonical build */
#define CBUILD "i686-pc-linux-gnu"

/* Canonical host */
#define CHOST "i686-pc-linux-gnu"

/* Canonical target */
#define CTARGET "i686-pc-linux-gnu"

/* define if the Boost library is available */
#define HAVE_BOOST /**/

/* define if the Boost::Filesystem library is available */
#define HAVE_BOOST_FILESYSTEM /**/

/* define if the Boost::PROGRAM_OPTIONS library is available */
#define HAVE_BOOST_PROGRAM_OPTIONS /**/

/* define if the Boost::System library is available */
#define HAVE_BOOST_SYSTEM /**/

/* Define to 1 if you have the <boost_system.h> header file. */
/* #undef HAVE_BOOST_SYSTEM_H */

/* Define to 1 if you have the <inttypes.h> header file. */
/* #undef HAVE_INTTYPES_H */

/* Define to 1 if you have the <memory.h> header file. */
/* #undef HAVE_MEMORY_H */

/* Define to 1 if you have the `sqrt' function. */
/* #undef HAVE_SQRT */

/* Define to 1 if stdbool.h conforms to C99. */
#define HAVE_STDBOOL_H 1

/* Define to 1 if you have the <stdint.h> header file. */
/* #undef HAVE_STDINT_H */

/* Define to 1 if you have the <stdlib.h> header file. */
/* #undef HAVE_STDLIB_H */

/* Define to 1 if you have the <strings.h> header file. */
/* #undef HAVE_STRINGS_H */

/* Define to 1 if you have the <string.h> header file. */
/* #undef HAVE_STRING_H */

/* Define to 1 if you have the <sys/stat.h> header file. */
/* #undef HAVE_SYS_STAT_H */

/* Define to 1 if you have the <sys/types.h> header file. */
/* #undef HAVE_SYS_TYPES_H */

/* Define to 1 if you have the <unistd.h> header file. */
/* #undef HAVE_UNISTD_H */

/* Define to 1 if the system has the type `_Bool'. */
#define HAVE__BOOL 1

/* Name of package */
#define PACKAGE "phenomatrix"

/* Define to the address where bug reports for this package should be sent. */
#define PACKAGE_BUGREPORT "john@gunfreeschools.org"

/* Define to the full name of this package. */
#define PACKAGE_NAME "phenomatrix"

/* Define to the full name and version of this package. */
#define PACKAGE_STRING "phenomatrix 0.1.0"

/* Define to the one symbol short name of this package. */
#define PACKAGE_TARNAME "phenomatrix"

/* Define to the home page for this package. */
#define PACKAGE_URL ""

/* Define to the version of this package. */
#define PACKAGE_VERSION "0.1.0"

/* Define to 1 if you have the ANSI C header files. */
/* #undef STDC_HEADERS */

/* Version number of package */
#define VERSION "0.1.0"

/* Define to `unsigned int' if <sys/types.h> does not define. */
/* #undef size_t */

configure.ac

#                                               -*- Autoconf -*-
# Process this file with autoconf to produce a configure script.
AC_PREREQ([2.64])
AC_LANG([C++])

AC_INIT([phenomatrix], [0.1.0], [john@gunfreeschools.org])
AC_CONFIG_AUX_DIR([/usr/share/automake-1.7])
AC_CONFIG_SRCDIR([src/oracle.h])
AC_CONFIG_HEADERS([config.h])

AC_CANONICAL_HOST
AC_DEFINE_UNQUOTED([CHOST], ["$host"], [Canonical host])
AC_CANONICAL_BUILD
AC_DEFINE_UNQUOTED([CBUILD], ["$build"], [Canonical build])
AC_CANONICAL_TARGET
AC_DEFINE_UNQUOTED([CTARGET], ["$target"], [Canonical target])

# Checks for programs.
AC_PROG_CXX

# Checks for libraries.
AX_BOOST_BASE([1.39.0])
AX_BOOST_SYSTEM
AX_BOOST_FILESYSTEM
AX_BOOST_PROGRAM_OPTIONS

AC_SEARCH_LIBS([get_system_category],[boost_system],[have_boost_system=yes])

# Checks for header files.
if test "x${have_boost_system}" = xyes; then
  AC_CHECK_HEADERS([boost_system.h], [], [have_boost=no])
fi

#if test "x${have_boost}" = xno; then
#  AC_MSG_ERROR([Could not find some or all of the boost libraries. These are required for building.])
#  (exit 1); exit 1;
#fi

# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_TYPE_SIZE_T

# Checks for library functions.
AC_CHECK_FUNCS([sqrt])

AM_INIT_AUTOMAKE

AC_CONFIG_FILES([
 Makefile
 src/Makefile
])
AC_OUTPUT

main.cpp

/* 
 * File:   main.cpp
 * Author: jwoods
 *
 * Created on June 19, 2009, 4:15 PM
 * Renamed from test.cpp on January 15, 2010, 3:52 PM
 */
#ifdef HAVE_CONFIG_H
# include <config.h>
# include <string>
const std::string VERSION         = PACKAGE_STRING;
const std::string TARGET_PLATFORM = CTARGET;
const std::string BUILD_PLATFORM  = CBUILD;
const std::string HOST_PLATFORM   = CHOST;
const std::string EMAIL_ADDRESS   = PACKAGE_BUGREPORT;
#endif

#include <boost/program_options.hpp>
#include <boost/tokenizer.hpp>
#include <iostream>

#include "mindist.h"
#include "avgmindist.h"
#include "partialbayes.h"

namespace po = boost::program_options;

// Prints program version information.
void print_program_header() {
#ifdef HAVE_CONFIG_H
    cout << "Phenomatrix++: " << VERSION << " on @ARCH@" << endl;
    cout << "Target       : " << TARGET_PLATFORM << endl;
    cout << "Build        : " << BUILD_PLATFORM << endl;
    cout << "Host         : " << HOST_PLATFORM << endl;
#else
    cout << "Phenomatrix++" << endl;
    cout << "    No config.h suppied: version and platform information unavailable." << endl;
#endif
    cout << "Copyright John O. Woods, 2009 - 2010" << endl;
    cout << "The Marcotte Lab, The University of Texas at Austin" << endl;
    cout << "Bug reports to " << EMAIL_ADDRESS << endl;
    cout << endl;
}

/*
 * MAIN: test genephene matrix class.
 */
int main(int argc, char** argv) {
    // Print version information immediately, no matter what else is asked for.
    print_program_header();

    /* ... */
}

Makefile.am

ACLOCAL_AMFLAGS = -I aclocal
AM_CXXFLAGS = $(BOOST_CPPFLAGS)
AM_LDFLAGS = $(BOOST_LDFLAGS) $(BOOST_SYSTEM_LIB) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB)

EXTRA_DIST = COPYING \
        README \
        aclocal
SUBDIRS = . src