Skip to content

Instantly share code, notes, and snippets.

@travs

travs/flow.md

Created July 9, 2015 02:57
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save travs/8ba576d161212967c46b to your computer and use it in GitHub Desktop.
Save travs/8ba576d161212967c46b to your computer and use it in GitHub Desktop.
Download ZIP
ChannelWorm Data Entry Workflow
Raw
flow.md

ChannelWorm Data Entry Workflow

Go from a paper to data + digitized plots

Note that steps 2-4 may not be necessary for every plot (e.g. one Ion Channel will be used for many Graphs in the database)

  1. Select a figure/paper from the spreadsheet
  2. Back in ChannelWorm, create a Reference for the paper you chose
  3. Make an Experiment using this Reference
  4. Add an Ion Channel corresponding to the Experiment
  5. Generate a Patch Clamp data object for this Experiment and Ion Channel
  6. Cut the figure in question from the paper
  7. Create a new Graph object and digitize
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment