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tritemio / Pandas resample spline interpolation.ipynb
Last active May 8, 2019 07:20
Pandas resample spline interpolation.ipynb
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tritemio / PSF and particle positions at photon emission times.ipynb
Last active April 2, 2022 00:50
PSF and particle positions at photon emission times.ipynb
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tritemio / Overflow bug in SPC-630 board.ipynb
Last active December 3, 2018 09:41
Overflow bug in SPC-630 board.ipynb
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tritemio / loader_smfret_noalex.py
Created August 1, 2017 03:52
Load in FRETBursts single-laser smFRET files from SM files
def sm_noalex(fname):
print(" - Loading '%s' ... " % fname)
ph_times_t, det_t, labels = loader.load_sm(fname, return_labels=True)
print(" [DONE]\n")
a_em = (det_t == 1)
dx = Data(fname=fname, clk_p=12.5e-9, nch=1,
ALEX=False, lifetime=False, alternated=False,
meas_type='smFRET',
ph_times_m=[ph_times_t], det_donor_accept=(0, 1), A_em=[a_em],
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tritemio / FRETBursts - smFRET lifetime example.ipynb
Created November 9, 2016 20:38
FRETBursts - smFRET lifetime example.ipynb
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tritemio / pybroom-example.ipynb
Created July 11, 2016 06:52
Simple pybroom example
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tritemio / pybroom-example-multi-datasets.ipynb
Last active July 11, 2016 07:40
Example of using pybroom with multiple datatsets and models
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tritemio / Decoding PTU files.ipynb
Last active November 8, 2016 20:15
Jupyter Notebook for decoding PicoQuant PTU files in python
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tritemio / Example - 2CDE Method.ipynb
Last active March 16, 2016 00:22
A FRETBursts notebooks implementing the 2CDE method.
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tritemio / notebook_runner.py
Created November 10, 2015 18:06
Run notebooks from another notebook, with input parameters
def run_notebook(notebook_name):
"""Runs the notebook `notebook_name` (file name with no extension).
This function executes notebook with name `notebook_name` (no extension)
and saves the fully executed notebook in a new file appending "-out"
to the original file name.
It also displays links to the original and executed notebooks.
"""
nb_name_full = notebook_name + '.ipynb'