Skip to content

Instantly share code, notes, and snippets.

@tseemann

tseemann/# express - 2016-07-29_22-32-19.txt

Created July 29, 2016 12:34
Show Gist options
  • Save tseemann/2663310d4e6d8bf18c431963218be55a to your computer and use it in GitHub Desktop.
Save tseemann/2663310d4e6d8bf18c431963218be55a to your computer and use it in GitHub Desktop.
Download ZIP
express (homebrew/science/express) on "Red Hat Enterprise Linux Server release 7.2 (Maipo)" - Homebrew build logs
Raw
# express - 2016-07-29_22-32-19.txt
Homebrew build logs for homebrew/science/express on "Red Hat Enterprise Linux Server release 7.2 (Maipo)"
Build date: 2016-07-29 22:32:19
Raw
00.config.out
HOMEBREW_VERSION: 0.9.9
ORIGIN: https://github.com/Linuxbrew/brew
HEAD: 8d18bd353d10ae57ee765ce4dad48c09c9c999e5
Last commit: 13 hours ago
Core tap ORIGIN: https://github.com/Linuxbrew/homebrew-core
Core tap HEAD: a5bd5a723bbe6fc501245fb2fde975c5daa8a682
Core tap last commit: 23 hours ago
HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew
HOMEBREW_REPOSITORY: /home/linuxbrew/.linuxbrew
HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
CPU: 72-core 64-bit haswell
Homebrew Ruby: 2.0.0-p598 => /usr/bin/ruby
Clang: N/A
Git: 2.9.2 => /home/linuxbrew/.linuxbrew/bin/git
Perl: /bin/perl => /usr/bin/perl
Python: /home/linuxbrew/.linuxbrew/bin/python => /home/linuxbrew/.linuxbrew/Cellar/python/2.7.12_1/bin/python2.7
Ruby: /bin/ruby => /usr/bin/ruby
Java: 1.8.0_102
Kernel: Linux 3.10.0-327.18.2.el7.x86_64 x86_64 GNU/Linux
OS: Red Hat Enterprise Linux Server release 7.2 (Maipo)
Codename: Maipo
OS glibc: 2.17
OS gcc: 4.8.5
Linuxbrew glibc: 2.19
Linuxbrew gcc: 5.3.0
Linuxbrew xorg: 20160314
Raw
00.doctor.out
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and what additional flags to use when
compiling and linking.
Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew provided
script of the same name. We found the following "config" scripts:
/bin/pkg-config
/bin/rarian-sk-config
/bin/scrollkeeper-config
/bin/ncurses5-config
/bin/brltty-config
/bin/firewall-config
/bin/nss-config
/bin/curl-config
/bin/ncursesw5-config
/bin/freetype-config
/bin/libpng-config
/bin/libpng15-config
/bin/gdlib-config
/bin/nspr-config
/bin/nss-util-config
/bin/apr-1-config
/bin/pcre-config
/bin/python2-config
/bin/python-config
/bin/python2.7-config
/bin/nss-softokn-config
/bin/kde4-config
/bin/apu-1-config
/bin/gpg-error-config
/bin/libgcrypt-config
/bin/xml2-config
/bin/icu-config
/bin/krb5-config
/bin/libgnutls-config
/bin/sdl-config
/bin/xslt-config
/bin/sane-config
/bin/cups-config
/bin/net-snmp-config
/bin/pcap-config
Warning: You have unlinked kegs in your Cellar
Leaving kegs unlinked can lead to build-trouble and cause brews that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
minia
Raw
00.tap.out
Formula: express
Tap: homebrew/science
Path: /home/linuxbrew/.linuxbrew/Library/Taps/homebrew/homebrew-science/express.rb
Raw
01.cmake
2016-07-29 22:32:00 +1000
cmake
.
-DCMAKE_C_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_INSTALL_PREFIX=/home/linuxbrew/.linuxbrew/Cellar/express/1.5.1_3
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_FIND_FRAMEWORK=LAST
-DCMAKE_VERBOSE_MAKEFILE=ON
-Wno-dev
-DCMAKE_BUILD_WITH_INSTALL_RPATH=1
-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=1
-- The C compiler identification is GNU 5.3.0
-- The CXX compiler identification is GNU 5.3.0
-- Check for working C compiler: /home/linuxbrew/.linuxbrew/bin/gcc-5
-- Check for working C compiler: /home/linuxbrew/.linuxbrew/bin/gcc-5 -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /home/linuxbrew/.linuxbrew/bin/g++-5
-- Check for working CXX compiler: /home/linuxbrew/.linuxbrew/bin/g++-5 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.60.0
-- Found the following Boost libraries:
-- thread
-- system
-- filesystem
-- program_options
-- date_time
-- chrono
-- atomic
-- Found GPERFTOOLS_TCMALLOC: /home/linuxbrew/.linuxbrew/lib64/libtcmalloc.so
-- Found Protobuf: /home/linuxbrew/.linuxbrew/lib64/libprotobuf.so;-lpthread (found version "2.6.1")
-- Found ZLIB: /home/linuxbrew/.linuxbrew/lib64/libz.so (found version "1.2.8")
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/express-20160729-134078-g44ogb/express-1.5.1-src
Raw
02.make
2016-07-29 22:32:03 +1000
make
install
/home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/cmake -H/tmp/express-20160729-134078-g44ogb/express-1.5.1-src -B/tmp/express-20160729-134078-g44ogb/express-1.5.1-src --check-build-system CMakeFiles/Makefile.cmake 0
/home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/cmake -E cmake_progress_start /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/CMakeFiles /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/tmp/express-20160729-134078-g44ogb/express-1.5.1-src'
make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend
make[2]: Entering directory `/tmp/express-20160729-134078-g44ogb/express-1.5.1-src'
[ 11%] Running C++ protocol buffer compiler on /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/targets.proto
[ 5%] Running C++ protocol buffer compiler on /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/alignments.proto
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/protoc --cpp_out /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src -I /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/targets.proto
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/protoc --cpp_out /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src -I /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/alignments.proto
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src && /home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/express-20160729-134078-g44ogb/express-1.5.1-src /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src /tmp/express-20160729-134078-g44ogb/express-1.5.1-src /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/CMakeFiles/express.dir/DependInfo.cmake --color=
Scanning dependencies of target express
make[2]: Leaving directory `/tmp/express-20160729-134078-g44ogb/express-1.5.1-src'
make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build
make[2]: Entering directory `/tmp/express-20160729-134078-g44ogb/express-1.5.1-src'
[ 16%] Building CXX object src/CMakeFiles/express.dir/biascorrection.cpp.o
[ 27%] Building CXX object src/CMakeFiles/express.dir/directiondetector.cpp.o
[ 22%] Building CXX object src/CMakeFiles/express.dir/bundles.cpp.o
[ 33%] Building CXX object src/CMakeFiles/express.dir/fragments.cpp.o
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/biascorrection.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/biascorrection.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/bundles.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/bundles.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/directiondetector.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/directiondetector.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/fragments.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/fragments.cpp
[ 38%] Building CXX object src/CMakeFiles/express.dir/lengthdistribution.cpp.o
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/lengthdistribution.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/lengthdistribution.cpp
[ 44%] Building CXX object src/CMakeFiles/express.dir/main.cpp.o
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/main.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/main.cpp
[ 50%] Building CXX object src/CMakeFiles/express.dir/mapparser.cpp.o
[ 55%] Building CXX object src/CMakeFiles/express.dir/markovmodel.cpp.o
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/mapparser.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/mapparser.cpp
[ 61%] Building CXX object src/CMakeFiles/express.dir/mismatchmodel.cpp.o
[ 66%] Building CXX object src/CMakeFiles/express.dir/robertsfilter.cpp.o
[ 72%] Building CXX object src/CMakeFiles/express.dir/sequence.cpp.o
[ 77%] Building CXX object src/CMakeFiles/express.dir/targets.cpp.o
[ 83%] Building CXX object src/CMakeFiles/express.dir/threadsafety.cpp.o
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/markovmodel.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/markovmodel.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/mismatchmodel.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/mismatchmodel.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/robertsfilter.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/robertsfilter.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/sequence.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/sequence.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/targets.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/targets.cpp
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/threadsafety.cpp.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/threadsafety.cpp
[ 94%] Building CXX object src/CMakeFiles/express.dir/targets.pb.cc.o
[ 88%] Building CXX object src/CMakeFiles/express.dir/alignments.pb.cc.o
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/targets.pb.cc.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/targets.pb.cc
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/bin/g++-5 -I/home/linuxbrew/.linuxbrew/include -I/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/bamtools/include -Wall -DNDEBUG -o CMakeFiles/express.dir/alignments.pb.cc.o -c /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/alignments.pb.cc
/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/targets.cpp: In member function 'void TargetTable::output_results(std::__cxx11::string, size_t, bool, bool)':
/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/targets.cpp:667:16: warning: variable 'count_var' set but not used [-Wunused-but-set-variable]
double count_var = 0;
^
In file included from /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/main.cpp:42:0:
/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/update_check.h: In function 'bool get_current_version(char*)':
/tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src/update_check.h:89:28: warning: argument to 'sizeof' in 'void bzero(void*, size_t)' call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
bzero(curr_version, sizeof(curr_version));
^
[100%] Linking CXX executable express
cd /tmp/express-20160729-134078-g44ogb/express-1.5.1-src/src && /home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1
/home/linuxbrew/.linuxbrew/bin/g++-5 -Wall -DNDEBUG -L/home/linuxbrew/.linuxbrew/lib -Wl,--dynamic-linker=/home/linuxbrew/.linuxbrew/lib/ld.so -Wl,-rpath,/home/linuxbrew/.linuxbrew/lib CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express -rdynamic /home/linuxbrew/.linuxbrew/lib64/libboost_thread-mt.so /home/linuxbrew/.linuxbrew/lib64/libboost_system-mt.so /home/linuxbrew/.linuxbrew/lib64/libboost_filesystem-mt.so /home/linuxbrew/.linuxbrew/lib64/libboost_program_options-mt.so /home/linuxbrew/.linuxbrew/lib64/libboost_date_time-mt.so /home/linuxbrew/.linuxbrew/lib64/libboost_chrono-mt.so /home/linuxbrew/.linuxbrew/lib64/libboost_atomic-mt.so /home/linuxbrew/.linuxbrew/lib64/libz.so ../bamtools/lib/libbamtools.a -lpthread -Wl,-Bstatic -lprotobuf -Wl,-Bdynamic -Wl,-rpath,/home/linuxbrew/.linuxbrew/lib64
CMakeFiles/express.dir/main.cpp.o: In function `parse_options(int, char**)':
main.cpp:(.text+0x6e7): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
main.cpp:(.text+0x99f): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
main.cpp:(.text+0xbeb): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
CMakeFiles/express.dir/main.cpp.o: In function `preprocess_main()':
main.cpp:(.text+0x633b): undefined reference to `google::protobuf::MessageLite::SerializeToString(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) const'
main.cpp:(.text+0x6c22): undefined reference to `google::protobuf::MessageLite::SerializeToString(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) const'
CMakeFiles/express.dir/main.cpp.o: In function `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)':
main.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x2e): undefined reference to `boost::program_options::validation_error::get_template[abi:cxx11](boost::program_options::validation_error::kind_t)'
main.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x4c): undefined reference to `boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)'
CMakeFiles/express.dir/main.cpp.o: In function `google::protobuf::internal::GetEmptyStringAlreadyInited[abi:cxx11]()':
main.cpp:(.text._ZN6google8protobuf8internal27GetEmptyStringAlreadyInitedB5cxx11Ev[_ZN6google8protobuf8internal27GetEmptyStringAlreadyInitedB5cxx11Ev]+0x7): undefined reference to `google::protobuf::internal::empty_string_[abi:cxx11]'
CMakeFiles/express.dir/main.cpp.o: In function `boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)':
main.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x72): undefined reference to `boost::program_options::detail::cmdline::cmdline(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)'
CMakeFiles/express.dir/main.cpp.o: In function `std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > boost::program_options::to_internal<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)':
main.cpp:(.text._ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE[_ZN5boost15program_options11to_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESt6vectorIS7_SaIS7_EERKS8_IT_SaISB_EE]+0x5d): undefined reference to `boost::program_options::to_internal(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIdcEE[_ZTVN5boost15program_options11typed_valueIdcEE]+0x40): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueImcEE[_ZTVN5boost15program_options11typed_valueImcEE]+0x40): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE[_ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE]+0x40): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/main.cpp.o: In function `boost::program_options::typed_value<double, char>::name() const':
main.cpp:(.text._ZNK5boost15program_options11typed_valueIdcE4nameEv[_ZNK5boost15program_options11typed_valueIdcE4nameEv]+0x32): undefined reference to `boost::program_options::arg[abi:cxx11]'
CMakeFiles/express.dir/main.cpp.o: In function `boost::program_options::typed_value<unsigned long, char>::name() const':
main.cpp:(.text._ZNK5boost15program_options11typed_valueImcE4nameEv[_ZNK5boost15program_options11typed_valueImcE4nameEv]+0x32): undefined reference to `boost::program_options::arg[abi:cxx11]'
CMakeFiles/express.dir/main.cpp.o: In function `boost::program_options::typed_value<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::name() const':
main.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv]+0x32): undefined reference to `boost::program_options::arg[abi:cxx11]'
CMakeFiles/express.dir/main.cpp.o: In function `boost::program_options::typed_value<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const':
main.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE]+0x9a): undefined reference to `boost::program_options::validate(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, int)'
CMakeFiles/express.dir/main.cpp.o: In function `void boost::program_options::validate<double, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, double*, long)':
main.cpp:(.text._ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x11b): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
CMakeFiles/express.dir/main.cpp.o: In function `void boost::program_options::validate<unsigned long, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, unsigned long*, long)':
main.cpp:(.text._ZN5boost15program_options8validateImcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateImcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x116): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/mapparser.cpp.o: In function `MapParser::MapParser(Library*, bool)':
mapparser.cpp:(.text+0x3ca): undefined reference to `BamTools::BamReader::Open(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
mapparser.cpp:(.text+0x4a0): undefined reference to `BamTools::BamWriter::Open(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, BamTools::SamHeader const&, std::vector<BamTools::RefData, std::allocator<BamTools::RefData> > const&)'
CMakeFiles/express.dir/mapparser.cpp.o: In function `BAMParser::header[abi:cxx11]() const':
mapparser.cpp:(.text._ZNK9BAMParser6headerB5cxx11Ev[_ZNK9BAMParser6headerB5cxx11Ev]+0x2e): undefined reference to `BamTools::BamReader::GetHeaderText[abi:cxx11]() const'
CMakeFiles/express.dir/mapparser.cpp.o: In function `bool BamTools::BamAlignment::AddTag<float>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, float const&)':
mapparser.cpp:(.text._ZN8BamTools12BamAlignment6AddTagIfEEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_RKT_[_ZN8BamTools12BamAlignment6AddTagIfEEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_RKT_]+0x52): undefined reference to `BamTools::BamAlignment::IsValidSize(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
mapparser.cpp:(.text._ZN8BamTools12BamAlignment6AddTagIfEEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_RKT_[_ZN8BamTools12BamAlignment6AddTagIfEEbRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_RKT_]+0xe6): undefined reference to `BamTools::BamAlignment::FindTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, char*&, unsigned int const&, unsigned int&) const'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::protobuf_AssignDesc_alignments_2eproto()':
alignments.pb.cc:(.text+0x4f): undefined reference to `google::protobuf::DescriptorPool::FindFileByName(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::protobuf_AddDesc_alignments_2eproto()':
alignments.pb.cc:(.text+0x4ab): undefined reference to `google::protobuf::MessageFactory::InternalRegisterGeneratedFile(char const*, void (*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&))'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::ReadAlignment::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*)':
alignments.pb.cc:(.text+0x1068): undefined reference to `google::protobuf::internal::WireFormatLite::ReadBytes(google::protobuf::io::CodedInputStream*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
alignments.pb.cc:(.text+0x11b6): undefined reference to `google::protobuf::internal::WireFormatLite::ReadBytes(google::protobuf::io::CodedInputStream*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::ReadAlignment::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const':
alignments.pb.cc:(.text+0x1352): undefined reference to `google::protobuf::internal::WireFormatLite::WriteBytesMaybeAliased(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
alignments.pb.cc:(.text+0x1385): undefined reference to `google::protobuf::internal::WireFormatLite::WriteBytesMaybeAliased(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::ReadAlignment::SerializeWithCachedSizesToArray(unsigned char*) const':
alignments.pb.cc:(.text+0x185c): undefined reference to `google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
alignments.pb.cc:(.text+0x1990): undefined reference to `google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::Fragment::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*)':
alignments.pb.cc:(.text+0x3d4d): undefined reference to `google::protobuf::internal::WireFormatLite::ReadString(google::protobuf::io::CodedInputStream*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::Fragment::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const':
alignments.pb.cc:(.text+0x4280): undefined reference to `google::protobuf::internal::WireFormatLite::WriteStringMaybeAliased(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
CMakeFiles/express.dir/alignments.pb.cc.o: In function `proto::Fragment::SerializeWithCachedSizesToArray(unsigned char*) const':
alignments.pb.cc:(.text+0x4479): undefined reference to `google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
CMakeFiles/express.dir/alignments.pb.cc.o:(.rodata._ZTVN5proto8FragmentE[_ZTVN5proto8FragmentE]+0x20): undefined reference to `google::protobuf::Message::GetTypeName[abi:cxx11]() const'
CMakeFiles/express.dir/alignments.pb.cc.o:(.rodata._ZTVN5proto8FragmentE[_ZTVN5proto8FragmentE]+0x40): undefined reference to `google::protobuf::Message::InitializationErrorString[abi:cxx11]() const'
CMakeFiles/express.dir/alignments.pb.cc.o:(.rodata._ZTVN5proto17FragmentAlignmentE[_ZTVN5proto17FragmentAlignmentE]+0x20): undefined reference to `google::protobuf::Message::GetTypeName[abi:cxx11]() const'
CMakeFiles/express.dir/alignments.pb.cc.o:(.rodata._ZTVN5proto17FragmentAlignmentE[_ZTVN5proto17FragmentAlignmentE]+0x40): undefined reference to `google::protobuf::Message::InitializationErrorString[abi:cxx11]() const'
CMakeFiles/express.dir/alignments.pb.cc.o:(.rodata._ZTVN5proto13ReadAlignmentE[_ZTVN5proto13ReadAlignmentE]+0x20): undefined reference to `google::protobuf::Message::GetTypeName[abi:cxx11]() const'
CMakeFiles/express.dir/alignments.pb.cc.o:(.rodata._ZTVN5proto13ReadAlignmentE[_ZTVN5proto13ReadAlignmentE]+0x40): undefined reference to `google::protobuf::Message::InitializationErrorString[abi:cxx11]() const'
CMakeFiles/express.dir/targets.pb.cc.o: In function `proto::protobuf_AssignDesc_targets_2eproto()':
targets.pb.cc:(.text+0x4f): undefined reference to `google::protobuf::DescriptorPool::FindFileByName(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/express.dir/targets.pb.cc.o: In function `proto::protobuf_AddDesc_targets_2eproto()':
targets.pb.cc:(.text+0x2b8): undefined reference to `google::protobuf::MessageFactory::InternalRegisterGeneratedFile(char const*, void (*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&))'
CMakeFiles/express.dir/targets.pb.cc.o: In function `proto::Target::MergePartialFromCodedStream(google::protobuf::io::CodedInputStream*)':
targets.pb.cc:(.text+0x9ba): undefined reference to `google::protobuf::internal::WireFormatLite::ReadString(google::protobuf::io::CodedInputStream*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
targets.pb.cc:(.text+0xdf4): undefined reference to `google::protobuf::internal::WireFormatLite::ReadBytes(google::protobuf::io::CodedInputStream*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'
CMakeFiles/express.dir/targets.pb.cc.o: In function `proto::Target::SerializeWithCachedSizes(google::protobuf::io::CodedOutputStream*) const':
targets.pb.cc:(.text+0xf34): undefined reference to `google::protobuf::internal::WireFormatLite::WriteStringMaybeAliased(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
targets.pb.cc:(.text+0xfc9): undefined reference to `google::protobuf::internal::WireFormatLite::WriteBytesMaybeAliased(int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, google::protobuf::io::CodedOutputStream*)'
CMakeFiles/express.dir/targets.pb.cc.o: In function `proto::Target::SerializeWithCachedSizesToArray(unsigned char*) const':
targets.pb.cc:(.text+0x1147): undefined reference to `google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
targets.pb.cc:(.text+0x14c3): undefined reference to `google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned char*)'
CMakeFiles/express.dir/targets.pb.cc.o:(.rodata._ZTVN5proto6TargetE[_ZTVN5proto6TargetE]+0x20): undefined reference to `google::protobuf::Message::GetTypeName[abi:cxx11]() const'
CMakeFiles/express.dir/targets.pb.cc.o:(.rodata._ZTVN5proto6TargetE[_ZTVN5proto6TargetE]+0x40): undefined reference to `google::protobuf::Message::InitializationErrorString[abi:cxx11]() const'
collect2: error: ld returned 1 exit status
make[2]: *** [src/express] Error 1
make[2]: Leaving directory `/tmp/express-20160729-134078-g44ogb/express-1.5.1-src'
make[1]: *** [src/CMakeFiles/express.dir/all] Error 2
make[1]: Leaving directory `/tmp/express-20160729-134078-g44ogb/express-1.5.1-src'
make: *** [all] Error 2
HOMEBREW_VERSION: 0.9.9
ORIGIN: https://github.com/Linuxbrew/brew
HEAD: 8d18bd353d10ae57ee765ce4dad48c09c9c999e5
Last commit: 13 hours ago
Core tap ORIGIN: https://github.com/Linuxbrew/homebrew-core
Core tap HEAD: a5bd5a723bbe6fc501245fb2fde975c5daa8a682
Core tap last commit: 23 hours ago
HOMEBREW_PREFIX: /home/linuxbrew/.linuxbrew
HOMEBREW_REPOSITORY: /home/linuxbrew/.linuxbrew
HOMEBREW_CELLAR: /home/linuxbrew/.linuxbrew/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
CPU: 72-core 64-bit haswell
Homebrew Ruby: 2.0.0-p598 => /usr/bin/ruby
Clang: N/A
Git: 2.9.2 => /home/linuxbrew/.linuxbrew/bin/git
Perl: /bin/perl => /usr/bin/perl
Python: /home/linuxbrew/.linuxbrew/bin/python => /home/linuxbrew/.linuxbrew/Cellar/python/2.7.12_1/bin/python2.7
Ruby: /bin/ruby => /usr/bin/ruby
Java: 1.8.0_102
Kernel: Linux 3.10.0-327.18.2.el7.x86_64 x86_64 GNU/Linux
OS: Red Hat Enterprise Linux Server release 7.2 (Maipo)
Codename: Maipo
OS glibc: 2.17
OS gcc: 4.8.5
Linuxbrew glibc: 2.19
Linuxbrew gcc: 5.3.0
Linuxbrew xorg: 20160314
CC: /home/linuxbrew/.linuxbrew/bin/gcc-5 => /home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0/bin/gcc-5
CXX: /home/linuxbrew/.linuxbrew/bin/g++-5 => /home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0/bin/g++-5
OBJC: /home/linuxbrew/.linuxbrew/bin/gcc-5
OBJCXX: /home/linuxbrew/.linuxbrew/bin/g++-5
CFLAGS: -Os -w -pipe -march=native
CXXFLAGS: -Os -w -pipe -march=native
CPPFLAGS: -isystem/home/linuxbrew/.linuxbrew/include
LDFLAGS: -L/home/linuxbrew/.linuxbrew/lib -Wl,--dynamic-linker=/home/linuxbrew/.linuxbrew/lib/ld.so -Wl,-rpath,/home/linuxbrew/.linuxbrew/lib
MAKEFLAGS: -j72
CMAKE_PREFIX_PATH: /home/linuxbrew/.linuxbrew
PKG_CONFIG_LIBDIR: /home/linuxbrew/.linuxbrew/lib/pkgconfig:/home/linuxbrew/.linuxbrew/share/pkgconfig
PATH: /home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/perl5/bin:/bio/perl5/bin:/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/bio/sw/hierBAPS:/bio/sw/brat:/bio/sw/mauve:/bio/sw/splitstree4:/bio/sw/vbc/fqa-tools:/bio/sw/vbc/misc:/bio/sw/tablet:/home/tseemann/git/wombac/bin:/home/tseemann/git/snippy/bin:/home/tseemann/git/barrnap/bin:/home/tseemann/git/nullarbor/bin:/home/tseemann/git/prokka/bin:/home/tseemann/git/mlst/bin:/home/tseemann/git/abricate/bin:/home/tseemann/git/mdu-tools/bin:/home/linuxbrew/.linuxbrew/Library/Homebrew/shims/scm
CPATH: /home/linuxbrew/.linuxbrew/include
LD_LIBRARY_PATH: /home/linuxbrew/.linuxbrew/Cellar/express/1.5.1_3/lib:/home/linuxbrew/.linuxbrew/Cellar/express/1.5.1_3
LD_RUN_PATH: /home/linuxbrew/.linuxbrew/lib
LIBRARY_PATH: /home/linuxbrew/.linuxbrew/lib
Raw
CMakeCache.txt
# This is the CMakeCache file.
# For build in directory: /tmp/express-20160729-134078-g44ogb/express-1.5.1-src
# It was generated by CMake: /home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/cmake
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.
########################
# EXTERNAL cache entries
########################
//Boost atomic library (debug)
Boost_ATOMIC_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_atomic-mt.so
//Boost atomic library (release)
Boost_ATOMIC_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_atomic-mt.so
//Boost chrono library (debug)
Boost_CHRONO_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_chrono-mt.so
//Boost chrono library (release)
Boost_CHRONO_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_chrono-mt.so
//Boost date_time library (debug)
Boost_DATE_TIME_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_date_time-mt.so
//Boost date_time library (release)
Boost_DATE_TIME_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_date_time-mt.so
//The directory containing a CMake configuration file for Boost.
Boost_DIR:PATH=Boost_DIR-NOTFOUND
//Boost filesystem library (debug)
Boost_FILESYSTEM_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_filesystem-mt.so
//Boost filesystem library (release)
Boost_FILESYSTEM_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_filesystem-mt.so
//Path to a file.
Boost_INCLUDE_DIR:PATH=/home/linuxbrew/.linuxbrew/include
//Boost library directory DEBUG
Boost_LIBRARY_DIR_DEBUG:PATH=/home/linuxbrew/.linuxbrew/lib64
//Boost library directory RELEASE
Boost_LIBRARY_DIR_RELEASE:PATH=/home/linuxbrew/.linuxbrew/lib64
//Boost program_options library (debug)
Boost_PROGRAM_OPTIONS_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_program_options-mt.so
//Boost program_options library (release)
Boost_PROGRAM_OPTIONS_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_program_options-mt.so
//Boost system library (debug)
Boost_SYSTEM_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_system-mt.so
//Boost system library (release)
Boost_SYSTEM_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_system-mt.so
//Boost thread library (debug)
Boost_THREAD_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_thread-mt.so
//Boost thread library (release)
Boost_THREAD_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libboost_thread-mt.so
//Path to a program.
CMAKE_AR:FILEPATH=/home/linuxbrew/.linuxbrew/bin/ar
//Choose the type of build, options are: None(CMAKE_CXX_FLAGS or
// CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel.
CMAKE_BUILD_TYPE:STRING=Release
//No help, variable specified on the command line.
CMAKE_BUILD_WITH_INSTALL_RPATH:UNINITIALIZED=1
//Enable/Disable color output during build.
CMAKE_COLOR_MAKEFILE:BOOL=ON
//CXX compiler
CMAKE_CXX_COMPILER:FILEPATH=/home/linuxbrew/.linuxbrew/bin/g++-5
//Flags used by the compiler during all build types.
CMAKE_CXX_FLAGS:STRING='-Os -w -pipe -march=native '
//Flags used by the compiler during debug builds.
CMAKE_CXX_FLAGS_DEBUG:STRING=-g
//Flags used by the compiler during release builds for minimum
// size.
CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
//Flags used by the compiler during release builds.
CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG
//Flags used by the compiler during release builds with debug info.
CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
//C compiler
CMAKE_C_COMPILER:FILEPATH=/home/linuxbrew/.linuxbrew/bin/gcc-5
//Flags used by the compiler during all build types.
CMAKE_C_FLAGS:STRING='-Os -w -pipe -march=native '
//Flags used by the compiler during debug builds.
CMAKE_C_FLAGS_DEBUG:STRING=-g
//Flags used by the compiler during release builds for minimum
// size.
CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
//Flags used by the compiler during release builds.
CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG
//Flags used by the compiler during release builds with debug info.
CMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
//Flags used by the linker.
CMAKE_EXE_LINKER_FLAGS:STRING= -L/home/linuxbrew/.linuxbrew/lib -Wl,--dynamic-linker=/home/linuxbrew/.linuxbrew/lib/ld.so -Wl,-rpath,/home/linuxbrew/.linuxbrew/lib
//Flags used by the linker during debug builds.
CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING=
//Flags used by the linker during release minsize builds.
CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING=
//Flags used by the linker during release builds.
CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=
//Flags used by the linker during Release with Debug Info builds.
CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
//Enable/Disable output of compile commands during generation.
CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=OFF
//No help, variable specified on the command line.
CMAKE_FIND_FRAMEWORK:UNINITIALIZED=LAST
//Install path prefix, prepended onto install directories.
CMAKE_INSTALL_PREFIX:PATH=/home/linuxbrew/.linuxbrew/Cellar/express/1.5.1_3
//No help, variable specified on the command line.
CMAKE_INSTALL_RPATH_USE_LINK_PATH:UNINITIALIZED=1
//Path to a program.
CMAKE_LINKER:FILEPATH=/home/linuxbrew/.linuxbrew/bin/ld
//Path to a program.
CMAKE_MAKE_PROGRAM:FILEPATH=/bin/gmake
//Flags used by the linker during the creation of modules.
CMAKE_MODULE_LINKER_FLAGS:STRING= -L/home/linuxbrew/.linuxbrew/lib -Wl,--dynamic-linker=/home/linuxbrew/.linuxbrew/lib/ld.so -Wl,-rpath,/home/linuxbrew/.linuxbrew/lib
//Flags used by the linker during debug builds.
CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=
//Flags used by the linker during release minsize builds.
CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=
//Flags used by the linker during release builds.
CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING=
//Flags used by the linker during Release with Debug Info builds.
CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
//Path to a program.
CMAKE_NM:FILEPATH=/home/linuxbrew/.linuxbrew/bin/nm
//Path to a program.
CMAKE_OBJCOPY:FILEPATH=/home/linuxbrew/.linuxbrew/bin/objcopy
//Path to a program.
CMAKE_OBJDUMP:FILEPATH=/home/linuxbrew/.linuxbrew/bin/objdump
//Value Computed by CMake
CMAKE_PROJECT_NAME:STATIC=express
//Path to a program.
CMAKE_RANLIB:FILEPATH=/home/linuxbrew/.linuxbrew/bin/ranlib
//Flags used by the linker during the creation of dll's.
CMAKE_SHARED_LINKER_FLAGS:STRING= -L/home/linuxbrew/.linuxbrew/lib -Wl,--dynamic-linker=/home/linuxbrew/.linuxbrew/lib/ld.so -Wl,-rpath,/home/linuxbrew/.linuxbrew/lib
//Flags used by the linker during debug builds.
CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING=
//Flags used by the linker during release minsize builds.
CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING=
//Flags used by the linker during release builds.
CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=
//Flags used by the linker during Release with Debug Info builds.
CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=
//If set, runtime paths are not added when installing shared libraries,
// but are added when building.
CMAKE_SKIP_INSTALL_RPATH:BOOL=NO
//If set, runtime paths are not added when using shared libraries.
CMAKE_SKIP_RPATH:BOOL=NO
//Flags used by the linker during the creation of static libraries.
CMAKE_STATIC_LINKER_FLAGS:STRING=
//Flags used by the linker during debug builds.
CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING=
//Flags used by the linker during release minsize builds.
CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING=
//Flags used by the linker during release builds.
CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=
//Flags used by the linker during Release with Debug Info builds.
CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING=
//Path to a program.
CMAKE_STRIP:FILEPATH=/home/linuxbrew/.linuxbrew/bin/strip
//If this value is on, makefiles will be generated without the
// .SILENT directive, and all commands will be echoed to the console
// during the make. This is useful for debugging only. With Visual
// Studio IDE projects all commands are done without /nologo.
CMAKE_VERBOSE_MAKEFILE:BOOL=ON
//Path to a library.
GPERFTOOLS_TCMALLOC_LIB:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libtcmalloc.so
//Path to a file.
Protobuf_INCLUDE_DIR:PATH=/home/linuxbrew/.linuxbrew/include
//Path to a library.
Protobuf_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libprotobuf.so
//Path to a library.
Protobuf_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libprotobuf.so
//Path to a library.
Protobuf_LITE_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libprotobuf-lite.so
//Path to a library.
Protobuf_LITE_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libprotobuf-lite.so
//The Google Protocol Buffers Compiler
Protobuf_PROTOC_EXECUTABLE:FILEPATH=/home/linuxbrew/.linuxbrew/bin/protoc
//Path to a library.
Protobuf_PROTOC_LIBRARY_DEBUG:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libprotoc.so
//Path to a library.
Protobuf_PROTOC_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libprotoc.so
//Path to a file.
ZLIB_INCLUDE_DIR:PATH=/home/linuxbrew/.linuxbrew/include
//Path to a library.
ZLIB_LIBRARY_DEBUG:FILEPATH=ZLIB_LIBRARY_DEBUG-NOTFOUND
//Path to a library.
ZLIB_LIBRARY_RELEASE:FILEPATH=/home/linuxbrew/.linuxbrew/lib64/libz.so
//Value Computed by CMake
express_BINARY_DIR:STATIC=/tmp/express-20160729-134078-g44ogb/express-1.5.1-src
//Value Computed by CMake
express_SOURCE_DIR:STATIC=/tmp/express-20160729-134078-g44ogb/express-1.5.1-src
########################
# INTERNAL cache entries
########################
//ADVANCED property for variable: Boost_ATOMIC_LIBRARY_DEBUG
Boost_ATOMIC_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_ATOMIC_LIBRARY_RELEASE
Boost_ATOMIC_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_CHRONO_LIBRARY_DEBUG
Boost_CHRONO_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_CHRONO_LIBRARY_RELEASE
Boost_CHRONO_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_DATE_TIME_LIBRARY_DEBUG
Boost_DATE_TIME_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_DATE_TIME_LIBRARY_RELEASE
Boost_DATE_TIME_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_DIR
Boost_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_FILESYSTEM_LIBRARY_DEBUG
Boost_FILESYSTEM_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_FILESYSTEM_LIBRARY_RELEASE
Boost_FILESYSTEM_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_INCLUDE_DIR
Boost_INCLUDE_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_LIBRARY_DIR_DEBUG
Boost_LIBRARY_DIR_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_LIBRARY_DIR_RELEASE
Boost_LIBRARY_DIR_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_PROGRAM_OPTIONS_LIBRARY_DEBUG
Boost_PROGRAM_OPTIONS_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_PROGRAM_OPTIONS_LIBRARY_RELEASE
Boost_PROGRAM_OPTIONS_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_SYSTEM_LIBRARY_DEBUG
Boost_SYSTEM_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_SYSTEM_LIBRARY_RELEASE
Boost_SYSTEM_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_THREAD_LIBRARY_DEBUG
Boost_THREAD_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Boost_THREAD_LIBRARY_RELEASE
Boost_THREAD_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_AR
CMAKE_AR-ADVANCED:INTERNAL=1
//This is the directory where this CMakeCache.txt was created
CMAKE_CACHEFILE_DIR:INTERNAL=/tmp/express-20160729-134078-g44ogb/express-1.5.1-src
//Major version of cmake used to create the current loaded cache
CMAKE_CACHE_MAJOR_VERSION:INTERNAL=3
//Minor version of cmake used to create the current loaded cache
CMAKE_CACHE_MINOR_VERSION:INTERNAL=6
//Patch version of cmake used to create the current loaded cache
CMAKE_CACHE_PATCH_VERSION:INTERNAL=1
//ADVANCED property for variable: CMAKE_COLOR_MAKEFILE
CMAKE_COLOR_MAKEFILE-ADVANCED:INTERNAL=1
//Path to CMake executable.
CMAKE_COMMAND:INTERNAL=/home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/cmake
//Path to cpack program executable.
CMAKE_CPACK_COMMAND:INTERNAL=/home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/cpack
//Path to ctest program executable.
CMAKE_CTEST_COMMAND:INTERNAL=/home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/ctest
//ADVANCED property for variable: CMAKE_CXX_COMPILER
CMAKE_CXX_COMPILER-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_CXX_FLAGS
CMAKE_CXX_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_CXX_FLAGS_DEBUG
CMAKE_CXX_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_CXX_FLAGS_MINSIZEREL
CMAKE_CXX_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_CXX_FLAGS_RELEASE
CMAKE_CXX_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_CXX_FLAGS_RELWITHDEBINFO
CMAKE_CXX_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_C_COMPILER
CMAKE_C_COMPILER-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_C_FLAGS
CMAKE_C_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_C_FLAGS_MINSIZEREL
CMAKE_C_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_C_FLAGS_RELEASE
CMAKE_C_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_C_FLAGS_RELWITHDEBINFO
CMAKE_C_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
//Path to cache edit program executable.
CMAKE_EDIT_COMMAND:INTERNAL=/home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/bin/ccmake
//Whether to issue deprecation errors for macros and functions.
CMAKE_ERROR_DEPRECATED:INTERNAL=FALSE
//Executable file format
CMAKE_EXECUTABLE_FORMAT:INTERNAL=ELF
//ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS
CMAKE_EXE_LINKER_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_DEBUG
CMAKE_EXE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_MINSIZEREL
CMAKE_EXE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELEASE
CMAKE_EXE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO
CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_EXPORT_COMPILE_COMMANDS
CMAKE_EXPORT_COMPILE_COMMANDS-ADVANCED:INTERNAL=1
//Name of external makefile project generator.
CMAKE_EXTRA_GENERATOR:INTERNAL=
//Name of generator.
CMAKE_GENERATOR:INTERNAL=Unix Makefiles
//Name of generator platform.
CMAKE_GENERATOR_PLATFORM:INTERNAL=
//Name of generator toolset.
CMAKE_GENERATOR_TOOLSET:INTERNAL=
//Have symbol pthread_create
CMAKE_HAVE_LIBC_CREATE:INTERNAL=
//Have library pthreads
CMAKE_HAVE_PTHREADS_CREATE:INTERNAL=
//Have library pthread
CMAKE_HAVE_PTHREAD_CREATE:INTERNAL=1
//Have include pthread.h
CMAKE_HAVE_PTHREAD_H:INTERNAL=1
//Source directory with the top level CMakeLists.txt file for this
// project
CMAKE_HOME_DIRECTORY:INTERNAL=/tmp/express-20160729-134078-g44ogb/express-1.5.1-src
//Install .so files without execute permission.
CMAKE_INSTALL_SO_NO_EXE:INTERNAL=0
//ADVANCED property for variable: CMAKE_LINKER
CMAKE_LINKER-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_MAKE_PROGRAM
CMAKE_MAKE_PROGRAM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS
CMAKE_MODULE_LINKER_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_DEBUG
CMAKE_MODULE_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL
CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO
CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_NM
CMAKE_NM-ADVANCED:INTERNAL=1
//number of local generators
CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=2
//ADVANCED property for variable: CMAKE_OBJCOPY
CMAKE_OBJCOPY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_OBJDUMP
CMAKE_OBJDUMP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_RANLIB
CMAKE_RANLIB-ADVANCED:INTERNAL=1
//Path to CMake installation.
CMAKE_ROOT:INTERNAL=/home/linuxbrew/.linuxbrew/Cellar/cmake/3.6.1/share/cmake
//ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_DEBUG
CMAKE_SHARED_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL
CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELEASE
CMAKE_SHARED_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO
CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_SKIP_INSTALL_RPATH
CMAKE_SKIP_INSTALL_RPATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_SKIP_RPATH
CMAKE_SKIP_RPATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS
CMAKE_STATIC_LINKER_FLAGS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_DEBUG
CMAKE_STATIC_LINKER_FLAGS_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL
CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELEASE
CMAKE_STATIC_LINKER_FLAGS_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO
CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CMAKE_STRIP
CMAKE_STRIP-ADVANCED:INTERNAL=1
//Suppress errors that are meant for the author of the CMakeLists.txt
// files.
CMAKE_SUPPRESS_DEVELOPER_ERRORS:INTERNAL=TRUE
//Suppress Warnings that are meant for the author of the CMakeLists.txt
// files.
CMAKE_SUPPRESS_DEVELOPER_WARNINGS:INTERNAL=TRUE
//uname command
CMAKE_UNAME:INTERNAL=/bin/uname
//ADVANCED property for variable: CMAKE_VERBOSE_MAKEFILE
CMAKE_VERBOSE_MAKEFILE-ADVANCED:INTERNAL=1
//Whether to issue warnings for deprecated functionality.
CMAKE_WARN_DEPRECATED:INTERNAL=FALSE
//Details about finding Protobuf
FIND_PACKAGE_MESSAGE_DETAILS_Protobuf:INTERNAL=[/home/linuxbrew/.linuxbrew/lib64/libprotobuf.so;-lpthread][/home/linuxbrew/.linuxbrew/include][v2.6.1()]
//Details about finding Threads
FIND_PACKAGE_MESSAGE_DETAILS_Threads:INTERNAL=[TRUE][v()]
//Details about finding ZLIB
FIND_PACKAGE_MESSAGE_DETAILS_ZLIB:INTERNAL=[/home/linuxbrew/.linuxbrew/lib64/libz.so][/home/linuxbrew/.linuxbrew/include][v1.2.8()]
//ADVANCED property for variable: Protobuf_INCLUDE_DIR
Protobuf_INCLUDE_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Protobuf_LIBRARY_DEBUG
Protobuf_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Protobuf_LIBRARY_RELEASE
Protobuf_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Protobuf_LITE_LIBRARY_DEBUG
Protobuf_LITE_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Protobuf_LITE_LIBRARY_RELEASE
Protobuf_LITE_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Protobuf_PROTOC_EXECUTABLE
Protobuf_PROTOC_EXECUTABLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Protobuf_PROTOC_LIBRARY_DEBUG
Protobuf_PROTOC_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Protobuf_PROTOC_LIBRARY_RELEASE
Protobuf_PROTOC_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ZLIB_INCLUDE_DIR
ZLIB_INCLUDE_DIR-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ZLIB_LIBRARY_DEBUG
ZLIB_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ZLIB_LIBRARY_RELEASE
ZLIB_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
//Components requested for this build tree.
_Boost_COMPONENTS_SEARCHED:INTERNAL=atomic;chrono;date_time;filesystem;program_options;system;thread
//Last used Boost_INCLUDE_DIR value.
_Boost_INCLUDE_DIR_LAST:INTERNAL=/home/linuxbrew/.linuxbrew/include
//Last used Boost_LIBRARY_DIR_DEBUG value.
_Boost_LIBRARY_DIR_DEBUG_LAST:INTERNAL=/home/linuxbrew/.linuxbrew/lib64
//Last used Boost_LIBRARY_DIR_RELEASE value.
_Boost_LIBRARY_DIR_RELEASE_LAST:INTERNAL=/home/linuxbrew/.linuxbrew/lib64
//Last used Boost_NAMESPACE value.
_Boost_NAMESPACE_LAST:INTERNAL=boost
//Last used Boost_USE_MULTITHREADED value.
_Boost_USE_MULTITHREADED_LAST:INTERNAL=TRUE
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment