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June 10, 2015 10:11
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| 2015-06-10 19:58:21 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| R version 3.1.3 (2015-03-09) -- "Smooth Sidewalk" | |
| /bio/linuxbrew/Cellar/r/3.1.3/lib64/R/bin/R CMD config --ldflags | |
| /bio/linuxbrew/Cellar/r/3.1.3/lib64/R/bin/R CMD config --cppflags | |
| Compilation parameters for rpy2's C components: | |
| include_dirs = ['/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include'] | |
| library_dirs = ['/bio/linuxbrew/lib', '/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib'] | |
| libraries = ['R', 'lzma', 'rt', 'dl', 'm', 'icuuc', 'icui18n'] | |
| extra_link_args = ['-Wl,--export-dynamic', '-fopenmp', '-Wl,-rpath,/bio/linuxbrew/lib'] | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-2.7 | |
| creating build/lib.linux-x86_64-2.7/rpy2 | |
| copying ./rpy/rpy_classic.py -> build/lib.linux-x86_64-2.7/rpy2 | |
| copying ./rpy/__init__.py -> build/lib.linux-x86_64-2.7/rpy2 | |
| copying ./rpy/tests.py -> build/lib.linux-x86_64-2.7/rpy2 | |
| copying ./rpy/tests_rpy_classic.py -> build/lib.linux-x86_64-2.7/rpy2 | |
| creating build/lib.linux-x86_64-2.7/rpy2/rlike | |
| copying ./rpy/rlike/functional.py -> build/lib.linux-x86_64-2.7/rpy2/rlike | |
| copying ./rpy/rlike/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rlike | |
| copying ./rpy/rlike/indexing.py -> build/lib.linux-x86_64-2.7/rpy2/rlike | |
| copying ./rpy/rlike/container.py -> build/lib.linux-x86_64-2.7/rpy2/rlike | |
| creating build/lib.linux-x86_64-2.7/rpy2/rlike/tests | |
| copying ./rpy/rlike/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests | |
| copying ./rpy/rlike/tests/test_indexing.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests | |
| copying ./rpy/rlike/tests/test_functional.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests | |
| copying ./rpy/rlike/tests/test_container.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests | |
| creating build/lib.linux-x86_64-2.7/rpy2/rinterface | |
| copying ./rpy/rinterface/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface | |
| creating build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_SexpSymbol.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_Device.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests | |
| creating build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/pandas2ri.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/conversion.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/methods.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/robject.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/language.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/functions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/packages_utils.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/packages.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/vectors.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/environments.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/constants.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/numpy2ri.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| copying ./rpy/robjects/help.py -> build/lib.linux-x86_64-2.7/rpy2/robjects | |
| creating build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testPackages.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testVector.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testArray.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testFormula.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testFunction.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testMethods.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testRobjects.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testHelp.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testRObject.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| copying ./rpy/robjects/tests/testLanguage.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests | |
| creating build/lib.linux-x86_64-2.7/rpy2/robjects/lib | |
| copying ./rpy/robjects/lib/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib | |
| copying ./rpy/robjects/lib/ggplot2.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib | |
| copying ./rpy/robjects/lib/grid.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib | |
| creating build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests | |
| copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests | |
| copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests | |
| creating build/lib.linux-x86_64-2.7/rpy2/interactive | |
| copying ./rpy/interactive/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/interactive | |
| copying ./rpy/interactive/process_revents.py -> build/lib.linux-x86_64-2.7/rpy2/interactive | |
| copying ./rpy/interactive/packages.py -> build/lib.linux-x86_64-2.7/rpy2/interactive | |
| creating build/lib.linux-x86_64-2.7/rpy2/interactive/tests | |
| copying ./rpy/interactive/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/interactive/tests | |
| creating build/lib.linux-x86_64-2.7/rpy2/ipython | |
| copying ./rpy/ipython/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/ipython | |
| copying ./rpy/ipython/rmagic.py -> build/lib.linux-x86_64-2.7/rpy2/ipython | |
| copying ./rpy/ipython/ggplot.py -> build/lib.linux-x86_64-2.7/rpy2/ipython | |
| copying ./rpy/ipython/html.py -> build/lib.linux-x86_64-2.7/rpy2/ipython | |
| creating build/lib.linux-x86_64-2.7/rpy2/ipython/tests | |
| copying ./rpy/ipython/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/ipython/tests | |
| copying ./rpy/ipython/tests/test_rmagic.py -> build/lib.linux-x86_64-2.7/rpy2/ipython/tests | |
| running build_ext | |
| R version 3.1.3 (2015-03-09) -- "Smooth Sidewalk" | |
| building 'rpy2.rinterface._rinterface' extension | |
| creating build/temp.linux-x86_64-2.7 | |
| creating build/temp.linux-x86_64-2.7/rpy | |
| creating build/temp.linux-x86_64-2.7/rpy/rinterface | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -I/usr/include/python2.7 -c ./rpy/rinterface/_rinterface.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o -L/bio/linuxbrew/lib -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -L/usr/lib64 -Wl,-R/bio/linuxbrew/lib -Wl,-R/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR -llzma -lrt -ldl -lm -licuuc -licui18n -lpython2.7 -o build/lib.linux-x86_64-2.7/rpy2/rinterface/_rinterface.so -Wl,--export-dynamic -fopenmp -Wl,-rpath,/bio/linuxbrew/lib | |
| building 'rpy2.rinterface._rpy_device' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -Irpy/rinterface -I/usr/include/python2.7 -c ./rpy/rinterface/_rpy_device.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/_rpy_device.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/./rpy/rinterface/_rpy_device.o -L/bio/linuxbrew/lib -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -L/usr/lib64 -Wl,-R/bio/linuxbrew/lib -Wl,-R/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR -llzma -lrt -ldl -lm -licuuc -licui18n -lpython2.7 -o build/lib.linux-x86_64-2.7/rpy2/rinterface/_rpy_device.so -Wl,--export-dynamic -fopenmp -Wl,-rpath,/bio/linuxbrew/lib | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64 | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7 | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2 | |
| copying build/lib.linux-x86_64-2.7/rpy2/rpy_classic.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2 | |
| copying build/lib.linux-x86_64-2.7/rpy2/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2 | |
| copying build/lib.linux-x86_64-2.7/rpy2/tests.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2 | |
| copying build/lib.linux-x86_64-2.7/rpy2/tests_rpy_classic.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2 | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/functional.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/indexing.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/container.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/tests/test_indexing.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/tests/test_functional.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rlike/tests/test_container.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_SexpEnvironment.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_Sexp.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_SexpSymbol.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_Device.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_SexpVector.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_EmbeddedR.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_SexpClosure.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_SexpExtPtr.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/tests/test_SexpVectorNumeric.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/_rinterface.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface | |
| copying build/lib.linux-x86_64-2.7/rpy2/rinterface/_rpy_device.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/pandas2ri.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/conversion.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/methods.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/robject.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/language.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/functions.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/packages_utils.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/packages.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/vectors.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/environments.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/constants.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/numpy2ri.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/help.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testPackages.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testNumpyConversions.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testVector.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testArray.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testFormula.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testFunction.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testDataFrame.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testPandasConversions.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testMethods.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testEnvironment.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testRobjects.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testHelp.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testRObject.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/tests/testLanguage.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/lib/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/lib/ggplot2.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/lib/grid.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests/test_ggplot2.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive | |
| copying build/lib.linux-x86_64-2.7/rpy2/interactive/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive | |
| copying build/lib.linux-x86_64-2.7/rpy2/interactive/process_revents.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive | |
| copying build/lib.linux-x86_64-2.7/rpy2/interactive/packages.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/interactive/tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive/tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython | |
| copying build/lib.linux-x86_64-2.7/rpy2/ipython/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython | |
| copying build/lib.linux-x86_64-2.7/rpy2/ipython/rmagic.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython | |
| copying build/lib.linux-x86_64-2.7/rpy2/ipython/ggplot.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython | |
| copying build/lib.linux-x86_64-2.7/rpy2/ipython/html.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/ipython/tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/tests | |
| copying build/lib.linux-x86_64-2.7/rpy2/ipython/tests/test_rmagic.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/tests | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rpy_classic.py to rpy_classic.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/tests.py to tests.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/tests_rpy_classic.py to tests_rpy_classic.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/functional.py to functional.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/indexing.py to indexing.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/container.py to container.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests/test_indexing.py to test_indexing.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests/test_functional.py to test_functional.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rlike/tests/test_container.py to test_container.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_SexpEnvironment.py to test_SexpEnvironment.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_Sexp.py to test_Sexp.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_SexpSymbol.py to test_SexpSymbol.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_Device.py to test_Device.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_SexpVector.py to test_SexpVector.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_EmbeddedR.py to test_EmbeddedR.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_SexpClosure.py to test_SexpClosure.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_SexpExtPtr.py to test_SexpExtPtr.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/rinterface/tests/test_SexpVectorNumeric.py to test_SexpVectorNumeric.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/pandas2ri.py to pandas2ri.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/conversion.py to conversion.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/methods.py to methods.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/robject.py to robject.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/language.py to language.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/functions.py to functions.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/packages_utils.py to packages_utils.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/packages.py to packages.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/vectors.py to vectors.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/environments.py to environments.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/constants.py to constants.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/numpy2ri.py to numpy2ri.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/help.py to help.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testPackages.py to testPackages.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testNumpyConversions.py to testNumpyConversions.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testVector.py to testVector.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testArray.py to testArray.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testFormula.py to testFormula.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testFunction.py to testFunction.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testDataFrame.py to testDataFrame.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testPandasConversions.py to testPandasConversions.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testMethods.py to testMethods.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testEnvironment.py to testEnvironment.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testRobjects.py to testRobjects.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testHelp.py to testHelp.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testRObject.py to testRObject.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/tests/testLanguage.py to testLanguage.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/ggplot2.py to ggplot2.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/grid.py to grid.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/tests/test_ggplot2.py to test_ggplot2.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/robjects/lib/tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive/process_revents.py to process_revents.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive/packages.py to packages.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/interactive/tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/rmagic.py to rmagic.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/ggplot.py to ggplot.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/html.py to html.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2/ipython/tests/test_rmagic.py to test_rmagic.pyc | |
| running install_egg_info | |
| running egg_info | |
| writing requirements to rpy2.egg-info/requires.txt | |
| writing rpy2.egg-info/PKG-INFO | |
| writing top-level names to rpy2.egg-info/top_level.txt | |
| writing dependency_links to rpy2.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'rpy2.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| warning: no files found matching 'README' anywhere in distribution | |
| warning: no previously-included files matching '*patch*' found anywhere in distribution | |
| warning: no previously-included files matching '*diff*' found anywhere in distribution | |
| warning: no previously-included files matching '.hg' found anywhere in distribution | |
| warning: no files found matching 'MANIFEST' | |
| warning: no files found matching 'README.md' | |
| warning: no files found matching 'MPL_LICENSE' | |
| warning: no files found matching 'GPL_LICENSE' | |
| warning: no files found matching 'LGPL_LICENSE' | |
| no previously-included directories found matching 'dist' | |
| warning: no files found matching 'doc/source/rpy2_logo.png' | |
| writing manifest file 'rpy2.egg-info/SOURCES.txt' | |
| Copying rpy2.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/rpy2-2.5.6-py2.7.egg-info | |
| running install_scripts | |
| writing list of installed files to 'installed.txt' |
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| 2015-06-10 19:58:26 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| Unable to find pgen, not compiling formal grammar. | |
| Compiling module Cython.Plex.Scanners ... | |
| Compiling module Cython.Plex.Actions ... | |
| Compiling module Cython.Compiler.Lexicon ... | |
| Compiling module Cython.Compiler.Scanning ... | |
| Compiling module Cython.Compiler.Parsing ... | |
| Compiling module Cython.Compiler.Visitor ... | |
| Compiling module Cython.Compiler.FlowControl ... | |
| Compiling module Cython.Compiler.Code ... | |
| Compiling module Cython.Tempita._tempita ... | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-2.7 | |
| copying cython.py -> build/lib.linux-x86_64-2.7 | |
| creating build/lib.linux-x86_64-2.7/Cython | |
| copying Cython/__init__.py -> build/lib.linux-x86_64-2.7/Cython | |
| copying Cython/CodeWriter.py -> build/lib.linux-x86_64-2.7/Cython | |
| copying Cython/Debugging.py -> build/lib.linux-x86_64-2.7/Cython | |
| copying Cython/Shadow.py -> build/lib.linux-x86_64-2.7/Cython | |
| copying Cython/StringIOTree.py -> build/lib.linux-x86_64-2.7/Cython | |
| copying Cython/TestUtils.py -> build/lib.linux-x86_64-2.7/Cython | |
| copying Cython/Utils.py -> build/lib.linux-x86_64-2.7/Cython | |
| creating build/lib.linux-x86_64-2.7/Cython/Build | |
| copying Cython/Build/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Build | |
| copying Cython/Build/BuildExecutable.py -> build/lib.linux-x86_64-2.7/Cython/Build | |
| copying Cython/Build/Cythonize.py -> build/lib.linux-x86_64-2.7/Cython/Build | |
| copying Cython/Build/Dependencies.py -> build/lib.linux-x86_64-2.7/Cython/Build | |
| copying Cython/Build/Inline.py -> build/lib.linux-x86_64-2.7/Cython/Build | |
| copying Cython/Build/IpythonMagic.py -> build/lib.linux-x86_64-2.7/Cython/Build | |
| creating build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/AnalysedTreeTransforms.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Annotate.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/AutoDocTransforms.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Buffer.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Builtin.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/CmdLine.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Code.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/CodeGeneration.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/CythonScope.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/DebugFlags.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Errors.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/ExprNodes.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/FlowControl.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/FusedNode.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Future.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Interpreter.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Lexicon.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Main.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/MemoryView.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/ModuleNode.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Naming.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Nodes.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Optimize.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Options.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/ParseTreeTransforms.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Parsing.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Pipeline.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/PyrexTypes.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Scanning.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/StringEncoding.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Symtab.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/TreeFragment.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/TreePath.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/TypeInference.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/TypeSlots.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/UtilityCode.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/UtilNodes.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Version.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Visitor.py -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| creating build/lib.linux-x86_64-2.7/Cython/Runtime | |
| copying Cython/Runtime/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Runtime | |
| creating build/lib.linux-x86_64-2.7/Cython/Distutils | |
| copying Cython/Distutils/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Distutils | |
| copying Cython/Distutils/build_ext.py -> build/lib.linux-x86_64-2.7/Cython/Distutils | |
| copying Cython/Distutils/extension.py -> build/lib.linux-x86_64-2.7/Cython/Distutils | |
| creating build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Actions.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/DFA.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Errors.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Lexicons.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Machines.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Regexps.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Scanners.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Timing.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Traditional.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Transitions.py -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| creating build/lib.linux-x86_64-2.7/Cython/Tests | |
| copying Cython/Tests/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Tests | |
| copying Cython/Tests/TestCodeWriter.py -> build/lib.linux-x86_64-2.7/Cython/Tests | |
| copying Cython/Tests/TestJediTyper.py -> build/lib.linux-x86_64-2.7/Cython/Tests | |
| copying Cython/Tests/TestStringIOTree.py -> build/lib.linux-x86_64-2.7/Cython/Tests | |
| copying Cython/Tests/xmlrunner.py -> build/lib.linux-x86_64-2.7/Cython/Tests | |
| creating build/lib.linux-x86_64-2.7/Cython/Build/Tests | |
| copying Cython/Build/Tests/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Build/Tests | |
| copying Cython/Build/Tests/TestInline.py -> build/lib.linux-x86_64-2.7/Cython/Build/Tests | |
| copying Cython/Build/Tests/TestIpythonMagic.py -> build/lib.linux-x86_64-2.7/Cython/Build/Tests | |
| copying Cython/Build/Tests/TestStripLiterals.py -> build/lib.linux-x86_64-2.7/Cython/Build/Tests | |
| creating build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestBuffer.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestMemView.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestParseTreeTransforms.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestSignatureMatching.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestTreeFragment.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestTreePath.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestUtilityLoad.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| copying Cython/Compiler/Tests/TestVisitor.py -> build/lib.linux-x86_64-2.7/Cython/Compiler/Tests | |
| creating build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| creating build/lib.linux-x86_64-2.7/Cython/Tempita | |
| copying Cython/Tempita/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Tempita | |
| copying Cython/Tempita/_looper.py -> build/lib.linux-x86_64-2.7/Cython/Tempita | |
| copying Cython/Tempita/_tempita.py -> build/lib.linux-x86_64-2.7/Cython/Tempita | |
| copying Cython/Tempita/compat3.py -> build/lib.linux-x86_64-2.7/Cython/Tempita | |
| creating build/lib.linux-x86_64-2.7/pyximport | |
| copying pyximport/__init__.py -> build/lib.linux-x86_64-2.7/pyximport | |
| copying pyximport/pyxbuild.py -> build/lib.linux-x86_64-2.7/pyximport | |
| copying pyximport/pyximport.py -> build/lib.linux-x86_64-2.7/pyximport | |
| creating build/lib.linux-x86_64-2.7/Cython/Debugger | |
| copying Cython/Debugger/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Debugger | |
| copying Cython/Debugger/Cygdb.py -> build/lib.linux-x86_64-2.7/Cython/Debugger | |
| copying Cython/Debugger/DebugWriter.py -> build/lib.linux-x86_64-2.7/Cython/Debugger | |
| copying Cython/Debugger/libcython.py -> build/lib.linux-x86_64-2.7/Cython/Debugger | |
| copying Cython/Debugger/libpython.py -> build/lib.linux-x86_64-2.7/Cython/Debugger | |
| creating build/lib.linux-x86_64-2.7/Cython/Debugger/Tests | |
| copying Cython/Debugger/Tests/__init__.py -> build/lib.linux-x86_64-2.7/Cython/Debugger/Tests | |
| copying Cython/Debugger/Tests/test_libcython_in_gdb.py -> build/lib.linux-x86_64-2.7/Cython/Debugger/Tests | |
| copying Cython/Debugger/Tests/test_libpython_in_gdb.py -> build/lib.linux-x86_64-2.7/Cython/Debugger/Tests | |
| copying Cython/Debugger/Tests/TestLibCython.py -> build/lib.linux-x86_64-2.7/Cython/Debugger/Tests | |
| creating build/lib.linux-x86_64-2.7/Cython/Includes | |
| copying Cython/Includes/openmp.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes | |
| creating build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/__init__.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/array.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/bool.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/buffer.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/bytes.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/cobject.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/complex.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/datetime.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/dict.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/exc.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/float.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/function.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/getargs.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/instance.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/int.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/iterator.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/list.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/long.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/mapping.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/mem.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/method.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/module.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/number.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/object.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/oldbuffer.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/pycapsule.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/pystate.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/pythread.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/ref.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/sequence.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/set.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/slice.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/string.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/tuple.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/type.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/unicode.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/version.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| copying Cython/Includes/cpython/weakref.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/cpython | |
| creating build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python2.5.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_bool.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_buffer.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_bytes.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_cobject.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_complex.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_dict.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_exc.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_float.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_function.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_getargs.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_instance.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_int.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_iterator.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_list.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_long.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_mapping.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_mem.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_method.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_module.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_number.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_object.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_oldbuffer.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_pycapsule.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_ref.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_sequence.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_set.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_string.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_tuple.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_type.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_unicode.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_version.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/python_weakref.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/stdio.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/stdlib.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| copying Cython/Includes/Deprecated/stl.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated | |
| creating build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/__init__.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/errno.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/float.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/limits.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/locale.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/math.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/setjmp.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/signal.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/stddef.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/stdint.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/stdio.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/stdlib.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/string.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| copying Cython/Includes/libc/time.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libc | |
| creating build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/__init__.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/algorithm.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/cast.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/complex.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/deque.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/list.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/map.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/pair.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/queue.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/set.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/stack.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/string.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/unordered_map.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/unordered_set.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/utility.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| copying Cython/Includes/libcpp/vector.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/libcpp | |
| creating build/lib.linux-x86_64-2.7/Cython/Includes/numpy | |
| copying Cython/Includes/numpy/__init__.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/numpy | |
| copying Cython/Includes/numpy/math.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/numpy | |
| creating build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/__init__.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/fcntl.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/ioctl.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/mman.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/resource.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/signal.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/stat.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/stdlib.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/strings.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/time.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/types.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/unistd.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Includes/posix/wait.pxd -> build/lib.linux-x86_64-2.7/Cython/Includes/posix | |
| copying Cython/Compiler/Code.pxd -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/FlowControl.pxd -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/ParseTreeTransforms.pxd -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Parsing.pxd -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Scanning.pxd -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Compiler/Visitor.pxd -> build/lib.linux-x86_64-2.7/Cython/Compiler | |
| copying Cython/Runtime/refnanny.pyx -> build/lib.linux-x86_64-2.7/Cython/Runtime | |
| copying Cython/Plex/Actions.pxd -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Plex/Scanners.pxd -> build/lib.linux-x86_64-2.7/Cython/Plex | |
| copying Cython/Utility/CConvert.pyx -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/CppConvert.pyx -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/MemoryView.pyx -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/TestCythonScope.pyx -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/TestCyUtilityLoader.pyx -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Buffer.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Builtins.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Capsule.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/CommonTypes.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/CythonFunction.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Embed.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Exceptions.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/ExtensionTypes.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/FunctionArguments.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Generator.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/ImportExport.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/MemoryView_C.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/ModuleSetupCode.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/ObjectHandling.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Optimize.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Overflow.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Printing.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/Profile.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/StringTools.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/TestUtilityLoader.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/TypeConversion.c -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/arrayarray.h -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Utility/CppSupport.cpp -> build/lib.linux-x86_64-2.7/Cython/Utility | |
| copying Cython/Debugger/Tests/codefile -> build/lib.linux-x86_64-2.7/Cython/Debugger/Tests | |
| copying Cython/Debugger/Tests/cfuncs.c -> build/lib.linux-x86_64-2.7/Cython/Debugger/Tests | |
| running build_ext | |
| building 'Cython.Plex.Scanners' extension | |
| creating build/temp.linux-x86_64-2.7 | |
| creating build/temp.linux-x86_64-2.7/tmp | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2 | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22 | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Plex | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Plex/Scanners.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Plex/Scanners.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Plex/Scanners.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Plex/Scanners.so | |
| building 'Cython.Plex.Actions' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Plex/Actions.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Plex/Actions.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Plex/Actions.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Plex/Actions.so | |
| building 'Cython.Compiler.Lexicon' extension | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Lexicon.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Lexicon.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Lexicon.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Compiler/Lexicon.so | |
| building 'Cython.Compiler.Scanning' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Scanning.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Scanning.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Scanning.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Compiler/Scanning.so | |
| building 'Cython.Compiler.Parsing' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Parsing.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Parsing.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Parsing.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Compiler/Parsing.so | |
| building 'Cython.Compiler.Visitor' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Visitor.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Visitor.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Visitor.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Compiler/Visitor.so | |
| building 'Cython.Compiler.FlowControl' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/FlowControl.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/FlowControl.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/FlowControl.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Compiler/FlowControl.so | |
| building 'Cython.Compiler.Code' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Code.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Code.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Compiler/Code.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Compiler/Code.so | |
| building 'Cython.Runtime.refnanny' extension | |
| creating build/temp.linux-x86_64-2.7/Cython | |
| creating build/temp.linux-x86_64-2.7/Cython/Runtime | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c Cython/Runtime/refnanny.c -o build/temp.linux-x86_64-2.7/Cython/Runtime/refnanny.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/Cython/Runtime/refnanny.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Runtime/refnanny.so | |
| building 'Cython.Tempita._tempita' extension | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Tempita | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c /tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Tempita/_tempita.c -o build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Tempita/_tempita.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--Cython20150610-70895-1gocpn2/Cython-0.22/Cython/Tempita/_tempita.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/Cython/Tempita/_tempita.so | |
| running install_lib | |
| copying build/lib.linux-x86_64-2.7/cython.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| copying build/lib.linux-x86_64-2.7/Cython/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| copying build/lib.linux-x86_64-2.7/Cython/CodeWriter.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugging.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| copying build/lib.linux-x86_64-2.7/Cython/Shadow.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| copying build/lib.linux-x86_64-2.7/Cython/StringIOTree.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| copying build/lib.linux-x86_64-2.7/Cython/TestUtils.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| copying build/lib.linux-x86_64-2.7/Cython/Utils.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/BuildExecutable.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/Cythonize.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/Dependencies.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/Inline.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/IpythonMagic.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/Tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/Tests/TestInline.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/Tests/TestIpythonMagic.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Build/Tests/TestStripLiterals.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/AnalysedTreeTransforms.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Annotate.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/AutoDocTransforms.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Buffer.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Builtin.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/CmdLine.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Code.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/CodeGeneration.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/CythonScope.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/DebugFlags.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Errors.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/ExprNodes.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/FlowControl.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/FusedNode.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Future.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Interpreter.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Lexicon.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Main.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/MemoryView.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/ModuleNode.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Naming.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Nodes.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Optimize.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Options.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/ParseTreeTransforms.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Parsing.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Pipeline.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/PyrexTypes.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Scanning.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/StringEncoding.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Symtab.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/TreeFragment.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/TreePath.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/TypeInference.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/TypeSlots.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/UtilityCode.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/UtilNodes.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Version.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Visitor.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestBuffer.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestMemView.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestParseTreeTransforms.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestSignatureMatching.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestTreeFragment.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestTreePath.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestUtilityLoad.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Tests/TestVisitor.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Code.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/FlowControl.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/ParseTreeTransforms.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Parsing.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Scanning.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Visitor.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Lexicon.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Scanning.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Parsing.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Visitor.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/FlowControl.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| copying build/lib.linux-x86_64-2.7/Cython/Compiler/Code.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Runtime | |
| copying build/lib.linux-x86_64-2.7/Cython/Runtime/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Runtime | |
| copying build/lib.linux-x86_64-2.7/Cython/Runtime/refnanny.pyx -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Runtime | |
| copying build/lib.linux-x86_64-2.7/Cython/Runtime/refnanny.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Runtime | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Distutils | |
| copying build/lib.linux-x86_64-2.7/Cython/Distutils/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Distutils | |
| copying build/lib.linux-x86_64-2.7/Cython/Distutils/build_ext.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Distutils | |
| copying build/lib.linux-x86_64-2.7/Cython/Distutils/extension.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Distutils | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Actions.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/DFA.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Errors.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Lexicons.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Machines.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Regexps.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Scanners.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Timing.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Traditional.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Transitions.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Actions.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Scanners.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Scanners.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| copying build/lib.linux-x86_64-2.7/Cython/Plex/Actions.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Tests/TestCodeWriter.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Tests/TestJediTyper.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Tests/TestStringIOTree.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Tests/xmlrunner.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/CConvert.pyx -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/CppConvert.pyx -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/MemoryView.pyx -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/TestCythonScope.pyx -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/TestCyUtilityLoader.pyx -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Buffer.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Builtins.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Capsule.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/CommonTypes.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/CythonFunction.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Embed.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Exceptions.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/ExtensionTypes.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/FunctionArguments.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Generator.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/ImportExport.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/MemoryView_C.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/ModuleSetupCode.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/ObjectHandling.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Optimize.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Overflow.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Printing.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/Profile.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/StringTools.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/TestUtilityLoader.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/TypeConversion.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/arrayarray.h -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| copying build/lib.linux-x86_64-2.7/Cython/Utility/CppSupport.cpp -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita | |
| copying build/lib.linux-x86_64-2.7/Cython/Tempita/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita | |
| copying build/lib.linux-x86_64-2.7/Cython/Tempita/_looper.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita | |
| copying build/lib.linux-x86_64-2.7/Cython/Tempita/_tempita.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita | |
| copying build/lib.linux-x86_64-2.7/Cython/Tempita/compat3.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita | |
| copying build/lib.linux-x86_64-2.7/Cython/Tempita/_tempita.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/Cygdb.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/DebugWriter.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/libcython.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/libpython.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/Tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/Tests/test_libcython_in_gdb.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/Tests/test_libpython_in_gdb.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/Tests/TestLibCython.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/Tests/codefile -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests | |
| copying build/lib.linux-x86_64-2.7/Cython/Debugger/Tests/cfuncs.c -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/openmp.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/__init__.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/array.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/bool.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/buffer.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/bytes.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/cobject.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/complex.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/datetime.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/dict.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/exc.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/float.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/function.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/getargs.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/instance.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/int.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/iterator.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/list.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/long.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/mapping.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/mem.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/method.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/module.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/number.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/object.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/oldbuffer.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/pycapsule.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/pystate.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/pythread.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/ref.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/sequence.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/set.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/slice.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/string.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/tuple.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/type.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/unicode.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/version.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/cpython/weakref.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/cpython | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python2.5.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_bool.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_buffer.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_bytes.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_cobject.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_complex.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_dict.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_exc.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_float.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_function.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_getargs.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_instance.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_int.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_iterator.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_list.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_long.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_mapping.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_mem.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_method.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_module.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_number.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_object.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_oldbuffer.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_pycapsule.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_ref.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_sequence.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_set.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_string.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_tuple.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_type.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_unicode.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_version.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/python_weakref.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/stdio.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/stdlib.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/Deprecated/stl.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/Deprecated | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/__init__.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/errno.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/float.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/limits.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/locale.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/math.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/setjmp.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/signal.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/stddef.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/stdint.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/stdio.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/stdlib.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/string.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libc/time.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libc | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/__init__.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/algorithm.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/cast.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/complex.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/deque.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/list.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/map.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/pair.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/queue.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/set.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/stack.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/string.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/unordered_map.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/unordered_set.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/utility.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/libcpp/vector.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/libcpp | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/numpy | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/numpy/__init__.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/numpy | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/numpy/math.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/numpy | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/__init__.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/fcntl.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/ioctl.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/mman.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/resource.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/signal.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/stat.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/stdlib.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/strings.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/time.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/types.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/unistd.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| copying build/lib.linux-x86_64-2.7/Cython/Includes/posix/wait.pxd -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Includes/posix | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/pyximport | |
| copying build/lib.linux-x86_64-2.7/pyximport/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/pyximport | |
| copying build/lib.linux-x86_64-2.7/pyximport/pyxbuild.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/pyximport | |
| copying build/lib.linux-x86_64-2.7/pyximport/pyximport.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/pyximport | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/cython.py to cython.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/CodeWriter.py to CodeWriter.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugging.py to Debugging.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Shadow.py to Shadow.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/StringIOTree.py to StringIOTree.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/TestUtils.py to TestUtils.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utils.py to Utils.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/BuildExecutable.py to BuildExecutable.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Cythonize.py to Cythonize.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Dependencies.py to Dependencies.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Inline.py to Inline.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/IpythonMagic.py to IpythonMagic.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests/TestInline.py to TestInline.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests/TestIpythonMagic.py to TestIpythonMagic.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Build/Tests/TestStripLiterals.py to TestStripLiterals.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/AnalysedTreeTransforms.py to AnalysedTreeTransforms.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Annotate.py to Annotate.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/AutoDocTransforms.py to AutoDocTransforms.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Buffer.py to Buffer.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Builtin.py to Builtin.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/CmdLine.py to CmdLine.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Code.py to Code.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/CodeGeneration.py to CodeGeneration.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/CythonScope.py to CythonScope.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/DebugFlags.py to DebugFlags.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Errors.py to Errors.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/ExprNodes.py to ExprNodes.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/FlowControl.py to FlowControl.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/FusedNode.py to FusedNode.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Future.py to Future.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Interpreter.py to Interpreter.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Lexicon.py to Lexicon.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Main.py to Main.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/MemoryView.py to MemoryView.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/ModuleNode.py to ModuleNode.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Naming.py to Naming.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Nodes.py to Nodes.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Optimize.py to Optimize.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Options.py to Options.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/ParseTreeTransforms.py to ParseTreeTransforms.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Parsing.py to Parsing.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Pipeline.py to Pipeline.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/PyrexTypes.py to PyrexTypes.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Scanning.py to Scanning.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/StringEncoding.py to StringEncoding.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Symtab.py to Symtab.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/TreeFragment.py to TreeFragment.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/TreePath.py to TreePath.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/TypeInference.py to TypeInference.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/TypeSlots.py to TypeSlots.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/UtilityCode.py to UtilityCode.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/UtilNodes.py to UtilNodes.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Version.py to Version.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Visitor.py to Visitor.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestBuffer.py to TestBuffer.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestMemView.py to TestMemView.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestParseTreeTransforms.py to TestParseTreeTransforms.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestSignatureMatching.py to TestSignatureMatching.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestTreeFragment.py to TestTreeFragment.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestTreePath.py to TestTreePath.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestUtilityLoad.py to TestUtilityLoad.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Compiler/Tests/TestVisitor.py to TestVisitor.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Runtime/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Distutils/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Distutils/build_ext.py to build_ext.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Distutils/extension.py to extension.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Actions.py to Actions.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/DFA.py to DFA.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Errors.py to Errors.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Lexicons.py to Lexicons.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Machines.py to Machines.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Regexps.py to Regexps.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Scanners.py to Scanners.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Timing.py to Timing.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Traditional.py to Traditional.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Plex/Transitions.py to Transitions.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests/TestCodeWriter.py to TestCodeWriter.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests/TestJediTyper.py to TestJediTyper.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests/TestStringIOTree.py to TestStringIOTree.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tests/xmlrunner.py to xmlrunner.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Utility/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita/_looper.py to _looper.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita/_tempita.py to _tempita.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Tempita/compat3.py to compat3.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Cygdb.py to Cygdb.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/DebugWriter.py to DebugWriter.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/libcython.py to libcython.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/libpython.py to libpython.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests/test_libcython_in_gdb.py to test_libcython_in_gdb.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests/test_libpython_in_gdb.py to test_libpython_in_gdb.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython/Debugger/Tests/TestLibCython.py to TestLibCython.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/pyximport/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/pyximport/pyxbuild.py to pyxbuild.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/pyximport/pyximport.py to pyximport.pyc | |
| running install_egg_info | |
| running egg_info | |
| creating Cython.egg-info | |
| writing Cython.egg-info/PKG-INFO | |
| writing top-level names to Cython.egg-info/top_level.txt | |
| writing dependency_links to Cython.egg-info/dependency_links.txt | |
| writing entry points to Cython.egg-info/entry_points.txt | |
| writing manifest file 'Cython.egg-info/SOURCES.txt' | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'Cython.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| warning: no files found matching '*.pyx' under directory 'Cython/Debugger/Tests' | |
| warning: no files found matching '*.pxd' under directory 'Cython/Debugger/Tests' | |
| warning: no files found matching '*.h' under directory 'Cython/Debugger/Tests' | |
| warning: no files found matching '*.pxd' under directory 'Cython/Utility' | |
| writing manifest file 'Cython.egg-info/SOURCES.txt' | |
| Copying Cython.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/Cython-0.22-py2.7.egg-info | |
| running install_scripts | |
| Installing cython script to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/bin | |
| Installing cygdb script to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/bin | |
| Installing cythonize script to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/bin | |
| writing list of installed files to 'installed.txt' |
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| 2015-06-10 19:59:21 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| no previously-included directories found matching 'doc/.build' | |
| Installed /tmp/easy_install-J1lK1z/pkgconfig-1.1.0/nose-1.3.7-py2.7.egg | |
| zip_safe flag not set; analyzing archive contents... | |
| Installed /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/pkgconfig-1.1.0-py2.7.egg | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-2.7 | |
| creating build/lib.linux-x86_64-2.7/h5py | |
| copying h5py/__init__.py -> build/lib.linux-x86_64-2.7/h5py | |
| copying h5py/highlevel.py -> build/lib.linux-x86_64-2.7/h5py | |
| copying h5py/ipy_completer.py -> build/lib.linux-x86_64-2.7/h5py | |
| copying h5py/version.py -> build/lib.linux-x86_64-2.7/h5py | |
| creating build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/__init__.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/base.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/dims.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/files.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/filters.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/group.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/selections.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-2.7/h5py/_hl | |
| creating build/lib.linux-x86_64-2.7/h5py/tests | |
| copying h5py/tests/__init__.py -> build/lib.linux-x86_64-2.7/h5py/tests | |
| copying h5py/tests/common.py -> build/lib.linux-x86_64-2.7/h5py/tests | |
| creating build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/__init__.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/common.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_attrs.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_attrs_data.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_base.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_dataset.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_datatype.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_dimension_scales.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_file.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_group.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_h5.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_h5f.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_h5p.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_h5t.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_objects.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_selections.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| copying h5py/tests/old/test_slicing.py -> build/lib.linux-x86_64-2.7/h5py/tests/old | |
| creating build/lib.linux-x86_64-2.7/h5py/tests/hl | |
| copying h5py/tests/hl/__init__.py -> build/lib.linux-x86_64-2.7/h5py/tests/hl | |
| copying h5py/tests/hl/test_attribute_create.py -> build/lib.linux-x86_64-2.7/h5py/tests/hl | |
| copying h5py/tests/hl/test_dataset_getitem.py -> build/lib.linux-x86_64-2.7/h5py/tests/hl | |
| copying h5py/tests/hl/test_dataset_swmr.py -> build/lib.linux-x86_64-2.7/h5py/tests/hl | |
| copying h5py/tests/hl/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-2.7/h5py/tests/hl | |
| copying h5py/tests/hl/test_file.py -> build/lib.linux-x86_64-2.7/h5py/tests/hl | |
| running build_ext | |
| Autodetection skipped [libhdf5.so: cannot open shared object file: No such file or directory] | |
| ******************************************************************************** | |
| Summary of the h5py configuration | |
| Path to HDF5: None | |
| HDF5 Version: '1.8.4' | |
| MPI Enabled: False | |
| Rebuild Required: False | |
| ******************************************************************************** | |
| Executing api_gen rebuild of defs | |
| Executing cythonize() | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/defs.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_errors.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_objects.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_proxy.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5fd.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5z.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5i.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5r.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/utils.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_conv.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5t.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5s.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5p.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5d.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5a.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5f.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5g.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5l.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5o.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ds.pyx because it changed. | |
| Compiling /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ac.pyx because it changed. | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_conv.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_errors.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_objects.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_proxy.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/defs.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5a.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ac.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5d.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ds.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5f.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5fd.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5g.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5i.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5l.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5o.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5p.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5r.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5s.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5t.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5z.pyx | |
| Cythonizing /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/utils.pyx | |
| building 'h5py.defs' extension | |
| creating build/temp.linux-x86_64-2.7 | |
| creating build/temp.linux-x86_64-2.7/tmp | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67 | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0 | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/defs.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/defs.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/defs.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/defs.so | |
| building 'h5py._errors' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_errors.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_errors.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_errors.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/_errors.so | |
| building 'h5py._objects' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_objects.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_objects.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_objects.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/_objects.so | |
| building 'h5py._proxy' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_proxy.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_proxy.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_proxy.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/_proxy.so | |
| building 'h5py.h5fd' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5fd.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5fd.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5fd.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5fd.so | |
| building 'h5py.h5z' extension | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf | |
| creating build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5z.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5z.o | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf_filter.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf_filter.o | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf/lzf_c.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf/lzf_c.o | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf/lzf_d.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf/lzf_d.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5z.o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf_filter.o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf/lzf_c.o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf/lzf/lzf_d.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5z.so | |
| building 'h5py.h5' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5.so | |
| building 'h5py.h5i' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5i.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5i.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5i.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5i.so | |
| building 'h5py.h5r' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5r.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5r.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5r.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5r.so | |
| building 'h5py.utils' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/utils.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/utils.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/utils.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/utils.so | |
| building 'h5py._conv' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_conv.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_conv.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/_conv.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/_conv.so | |
| building 'h5py.h5t' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5t.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5t.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5t.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5t.so | |
| building 'h5py.h5s' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5s.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5s.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5s.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5s.so | |
| building 'h5py.h5p' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5p.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5p.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5p.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5p.so | |
| building 'h5py.h5d' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5d.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5d.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5d.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5d.so | |
| building 'h5py.h5a' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5a.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5a.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5a.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5a.so | |
| building 'h5py.h5f' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5f.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5f.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5f.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5f.so | |
| building 'h5py.h5g' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5g.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5g.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5g.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5g.so | |
| building 'h5py.h5l' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5l.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5l.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5l.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5l.so | |
| building 'h5py.h5o' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5o.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5o.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5o.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5o.so | |
| building 'h5py.h5ds' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ds.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ds.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ds.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5ds.so | |
| building 'h5py.h5ac' extension | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -DH5_USE_16_API -I/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/lzf -I/opt/local/include -I/usr/local/include -I/bio/python/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c /tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ac.c -o build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ac.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/tmp/poretools--h5py20150610-70895-1n6wb67/h5py-2.5.0/h5py/h5ac.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,-R/opt/local/lib -Wl,-R/usr/local/lib -lhdf5 -lhdf5_hl -lpython2.7 -o build/lib.linux-x86_64-2.7/h5py/h5ac.so | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/highlevel.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/ipy_completer.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/version.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/attrs.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/base.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/dataset.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/datatype.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/dims.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/files.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/filters.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/group.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/selections.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| copying build/lib.linux-x86_64-2.7/h5py/_hl/selections2.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/common.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/common.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_attrs.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_attrs_data.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_base.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_dataset.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_datatype.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_dimension_scales.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_file.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_group.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_h5.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_h5f.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_h5p.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_h5t.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_objects.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_selections.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/old/test_slicing.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/hl/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/hl/test_attribute_create.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/hl/test_dataset_getitem.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/hl/test_dataset_swmr.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/hl/test_dims_dimensionproxy.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl | |
| copying build/lib.linux-x86_64-2.7/h5py/tests/hl/test_file.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl | |
| copying build/lib.linux-x86_64-2.7/h5py/defs.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/_errors.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/_objects.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/_proxy.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5fd.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5z.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5i.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5r.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/utils.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/_conv.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5t.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5s.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5p.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5d.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5a.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5f.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5g.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5l.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5o.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5ds.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| copying build/lib.linux-x86_64-2.7/h5py/h5ac.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/highlevel.py to highlevel.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/ipy_completer.py to ipy_completer.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/version.py to version.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/attrs.py to attrs.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/base.py to base.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/dataset.py to dataset.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/datatype.py to datatype.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/dims.py to dims.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/files.py to files.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/filters.py to filters.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/group.py to group.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/selections.py to selections.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/_hl/selections2.py to selections2.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/common.py to common.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/common.py to common.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_attrs.py to test_attrs.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_attrs_data.py to test_attrs_data.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_base.py to test_base.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_dataset.py to test_dataset.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_datatype.py to test_datatype.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_dimension_scales.py to test_dimension_scales.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_file.py to test_file.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_group.py to test_group.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_h5.py to test_h5.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_h5f.py to test_h5f.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_h5p.py to test_h5p.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_h5t.py to test_h5t.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_objects.py to test_objects.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_selections.py to test_selections.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/old/test_slicing.py to test_slicing.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl/test_attribute_create.py to test_attribute_create.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl/test_dataset_getitem.py to test_dataset_getitem.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl/test_dataset_swmr.py to test_dataset_swmr.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl/test_dims_dimensionproxy.py to test_dims_dimensionproxy.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py/tests/hl/test_file.py to test_file.pyc | |
| running install_egg_info | |
| running egg_info | |
| writing requirements to h5py.egg-info/requires.txt | |
| writing h5py.egg-info/PKG-INFO | |
| writing top-level names to h5py.egg-info/top_level.txt | |
| writing dependency_links to h5py.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'h5py.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| writing manifest file 'h5py.egg-info/SOURCES.txt' | |
| Copying h5py.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/h5py-2.5.0-py2.7.egg-info | |
| running install_scripts | |
| writing list of installed files to 'installed.txt' |
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| 2015-06-10 19:59:58 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib | |
| copying six.py -> build/lib | |
| running install_lib | |
| copying build/lib/six.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/six.py to six.pyc | |
| running install_egg_info | |
| running egg_info | |
| writing six.egg-info/PKG-INFO | |
| writing top-level names to six.egg-info/top_level.txt | |
| writing dependency_links to six.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'six.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| no previously-included directories found matching 'documentation/_build' | |
| writing manifest file 'six.egg-info/SOURCES.txt' | |
| Copying six.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/six-1.9.0-py2.7.egg-info | |
| running install_scripts | |
| writing list of installed files to 'installed.txt' |
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Learn more about bidirectional Unicode characters
| 2015-06-10 19:59:58 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib | |
| creating build/lib/watchdog | |
| copying src/watchdog/watchmedo.py -> build/lib/watchdog | |
| copying src/watchdog/events.py -> build/lib/watchdog | |
| copying src/watchdog/__init__.py -> build/lib/watchdog | |
| copying src/watchdog/version.py -> build/lib/watchdog | |
| creating build/lib/watchdog/observers | |
| copying src/watchdog/observers/read_directory_changes.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/api.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/kqueue.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/inotify_buffer.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/fsevents.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/winapi.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/polling.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/fsevents2.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/inotify_c.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/__init__.py -> build/lib/watchdog/observers | |
| copying src/watchdog/observers/inotify.py -> build/lib/watchdog/observers | |
| creating build/lib/watchdog/utils | |
| copying src/watchdog/utils/unicode_paths.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/compat.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/bricks.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/delayed_queue.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/echo.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/dirsnapshot.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/importlib2.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/platform.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/event_backport.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/__init__.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/win32stat.py -> build/lib/watchdog/utils | |
| copying src/watchdog/utils/decorators.py -> build/lib/watchdog/utils | |
| creating build/lib/watchdog/tricks | |
| copying src/watchdog/tricks/__init__.py -> build/lib/watchdog/tricks | |
| running egg_info | |
| writing requirements to src/watchdog.egg-info/requires.txt | |
| writing src/watchdog.egg-info/PKG-INFO | |
| writing top-level names to src/watchdog.egg-info/top_level.txt | |
| writing dependency_links to src/watchdog.egg-info/dependency_links.txt | |
| writing entry points to src/watchdog.egg-info/entry_points.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'src/watchdog.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| warning: no files found matching '*.h' under directory 'src' | |
| writing manifest file 'src/watchdog.egg-info/SOURCES.txt' | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog | |
| copying build/lib/watchdog/watchmedo.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog | |
| copying build/lib/watchdog/events.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog | |
| copying build/lib/watchdog/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog | |
| copying build/lib/watchdog/version.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/read_directory_changes.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/api.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/kqueue.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/inotify_buffer.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/fsevents.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/winapi.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/polling.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/fsevents2.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/inotify_c.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| copying build/lib/watchdog/observers/inotify.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/unicode_paths.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/compat.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/bricks.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/delayed_queue.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/echo.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/dirsnapshot.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/importlib2.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/platform.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/event_backport.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/win32stat.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| copying build/lib/watchdog/utils/decorators.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/tricks | |
| copying build/lib/watchdog/tricks/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/tricks | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/watchmedo.py to watchmedo.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/events.py to events.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/version.py to version.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/read_directory_changes.py to read_directory_changes.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/api.py to api.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/kqueue.py to kqueue.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/inotify_buffer.py to inotify_buffer.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/fsevents.py to fsevents.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/winapi.py to winapi.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/polling.py to polling.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/fsevents2.py to fsevents2.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/inotify_c.py to inotify_c.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/observers/inotify.py to inotify.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/unicode_paths.py to unicode_paths.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/compat.py to compat.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/bricks.py to bricks.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/delayed_queue.py to delayed_queue.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/echo.py to echo.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/dirsnapshot.py to dirsnapshot.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/importlib2.py to importlib2.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/platform.py to platform.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/event_backport.py to event_backport.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/win32stat.py to win32stat.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/utils/decorators.py to decorators.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog/tricks/__init__.py to __init__.pyc | |
| running install_egg_info | |
| Copying src/watchdog.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/watchdog-0.8.3-py2.7.egg-info | |
| running install_scripts | |
| Installing watchmedo script to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/bin | |
| writing list of installed files to 'installed.txt' |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| 2015-06-10 19:59:59 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib | |
| creating build/lib/pathtools | |
| copying pathtools/__init__.py -> build/lib/pathtools | |
| copying pathtools/path.py -> build/lib/pathtools | |
| copying pathtools/patterns.py -> build/lib/pathtools | |
| copying pathtools/version.py -> build/lib/pathtools | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools | |
| copying build/lib/pathtools/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools | |
| copying build/lib/pathtools/path.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools | |
| copying build/lib/pathtools/patterns.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools | |
| copying build/lib/pathtools/version.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools/path.py to path.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools/patterns.py to patterns.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools/version.py to version.pyc | |
| running install_egg_info | |
| running egg_info | |
| writing pathtools.egg-info/PKG-INFO | |
| writing top-level names to pathtools.egg-info/top_level.txt | |
| writing dependency_links to pathtools.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'pathtools.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| writing manifest file 'pathtools.egg-info/SOURCES.txt' | |
| Copying pathtools.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/pathtools-0.1.2-py2.7.egg-info | |
| running install_scripts | |
| writing list of installed files to 'installed.txt' |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| 2015-06-10 19:59:59 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib | |
| creating build/lib/argh | |
| copying argh/completion.py -> build/lib/argh | |
| copying argh/exceptions.py -> build/lib/argh | |
| copying argh/decorators.py -> build/lib/argh | |
| copying argh/__init__.py -> build/lib/argh | |
| copying argh/constants.py -> build/lib/argh | |
| copying argh/compat.py -> build/lib/argh | |
| copying argh/dispatching.py -> build/lib/argh | |
| copying argh/helpers.py -> build/lib/argh | |
| copying argh/io.py -> build/lib/argh | |
| copying argh/assembling.py -> build/lib/argh | |
| copying argh/utils.py -> build/lib/argh | |
| copying argh/interaction.py -> build/lib/argh | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/completion.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/exceptions.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/decorators.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/constants.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/compat.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/dispatching.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/helpers.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/io.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/assembling.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/utils.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| copying build/lib/argh/interaction.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/completion.py to completion.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/exceptions.py to exceptions.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/decorators.py to decorators.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/constants.py to constants.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/compat.py to compat.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/dispatching.py to dispatching.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/helpers.py to helpers.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/io.py to io.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/assembling.py to assembling.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/utils.py to utils.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh/interaction.py to interaction.pyc | |
| running install_egg_info | |
| running egg_info | |
| writing argh.egg-info/PKG-INFO | |
| writing top-level names to argh.egg-info/top_level.txt | |
| writing dependency_links to argh.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'argh.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| writing manifest file 'argh.egg-info/SOURCES.txt' | |
| Copying argh.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/argh-0.26.1-py2.7.egg-info | |
| running install_scripts | |
| writing list of installed files to 'installed.txt' |
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| 2015-06-10 19:59:59 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-2.7 | |
| creating build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/cyaml.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/serializer.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/scanner.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/loader.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/emitter.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/events.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/composer.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/resolver.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/nodes.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/__init__.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/parser.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/reader.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/dumper.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/tokens.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/error.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/constructor.py -> build/lib.linux-x86_64-2.7/yaml | |
| copying lib/yaml/representer.py -> build/lib.linux-x86_64-2.7/yaml | |
| running build_ext | |
| creating build/temp.linux-x86_64-2.7 | |
| checking if libyaml is compilable | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c build/temp.linux-x86_64-2.7/check_libyaml.c -o build/temp.linux-x86_64-2.7/check_libyaml.o | |
| checking if libyaml is linkable | |
| /bio/linuxbrew/bin/gcc-5 build/temp.linux-x86_64-2.7/check_libyaml.o -L/usr/lib64 -lyaml -o build/temp.linux-x86_64-2.7/check_libyaml | |
| skipping 'ext/_yaml.c' Cython extension (up-to-date) | |
| building '_yaml' extension | |
| creating build/temp.linux-x86_64-2.7/ext | |
| /bio/linuxbrew/bin/gcc-5 -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include -fPIC -I/usr/include/python2.7 -c ext/_yaml.c -o build/temp.linux-x86_64-2.7/ext/_yaml.o | |
| gcc -pthread -shared -Wl,-z,relro -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -Os -w -pipe -march=core2 -isystem/bio/linuxbrew/include build/temp.linux-x86_64-2.7/ext/_yaml.o -L/usr/lib64 -lyaml -lpython2.7 -o build/lib.linux-x86_64-2.7/_yaml.so | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/cyaml.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/serializer.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/scanner.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/loader.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/emitter.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/events.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/composer.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/resolver.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/nodes.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/parser.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/reader.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/dumper.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/tokens.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/error.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/constructor.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/yaml/representer.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml | |
| copying build/lib.linux-x86_64-2.7/_yaml.so -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/cyaml.py to cyaml.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/serializer.py to serializer.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/scanner.py to scanner.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/loader.py to loader.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/emitter.py to emitter.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/events.py to events.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/composer.py to composer.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/resolver.py to resolver.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/nodes.py to nodes.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/parser.py to parser.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/reader.py to reader.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/dumper.py to dumper.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/tokens.py to tokens.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/error.py to error.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/constructor.py to constructor.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/yaml/representer.py to representer.pyc | |
| running install_egg_info | |
| running egg_info | |
| creating lib/PyYAML.egg-info | |
| writing lib/PyYAML.egg-info/PKG-INFO | |
| writing top-level names to lib/PyYAML.egg-info/top_level.txt | |
| writing dependency_links to lib/PyYAML.egg-info/dependency_links.txt | |
| writing manifest file 'lib/PyYAML.egg-info/SOURCES.txt' | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'lib/PyYAML.egg-info/SOURCES.txt' | |
| writing manifest file 'lib/PyYAML.egg-info/SOURCES.txt' | |
| Copying lib/PyYAML.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib64/python2.7/site-packages/PyYAML-3.11-py2.7.egg-info | |
| running install_scripts | |
| writing list of installed files to 'installed.txt' |
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| 2015-06-10 20:00:02 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib | |
| copying singledispatch.py -> build/lib | |
| copying singledispatch_helpers.py -> build/lib | |
| running install_lib | |
| copying build/lib/singledispatch.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages | |
| copying build/lib/singledispatch_helpers.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/singledispatch.py to singledispatch.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/singledispatch_helpers.py to singledispatch_helpers.pyc | |
| running install_egg_info | |
| running egg_info | |
| writing requirements to singledispatch.egg-info/requires.txt | |
| writing singledispatch.egg-info/PKG-INFO | |
| writing top-level names to singledispatch.egg-info/top_level.txt | |
| writing dependency_links to singledispatch.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'singledispatch.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| writing manifest file 'singledispatch.egg-info/SOURCES.txt' | |
| Copying singledispatch.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/lib/python2.7/site-packages/singledispatch-3.4.0.3-py2.7.egg-info | |
| running install_scripts | |
| writing list of installed files to 'installed.txt' |
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| 2015-06-10 20:00:02 +1000 | |
| R | |
| -q | |
| -e | |
| install.packages('devtools', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library', repos='http://cran.r-project.org') | |
| > install.packages('devtools', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library', repos='http://cran.r-project.org') | |
| also installing the dependencies ‘BH’, ‘mime’, ‘R6’, ‘bitops’, ‘brew’, ‘curl’, ‘xml2’, ‘httr’, ‘RCurl’, ‘memoise’, ‘whisker’, ‘evaluate’, ‘rstudioapi’, ‘jsonlite’, ‘roxygen2’, ‘rversions’, ‘git2r’ | |
| trying URL 'http://cran.r-project.org/src/contrib/BH_1.58.0-1.tar.gz' | |
| Content type 'application/x-gzip' length 8727864 bytes (8.3 MB) | |
| opened URL | |
| ================================================== | |
| downloaded 8.3 MB | |
| trying URL 'http://cran.r-project.org/src/contrib/mime_0.3.tar.gz' | |
| Content type 'application/x-gzip' length 12289 bytes (12 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 12 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/R6_2.0.1.tar.gz' | |
| Content type 'application/x-gzip' length 120554 bytes (117 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 117 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz' | |
| Content type 'application/x-gzip' length 8734 bytes | |
| opened URL | |
| ================================================== | |
| downloaded 8734 bytes | |
| trying URL 'http://cran.r-project.org/src/contrib/brew_1.0-6.tar.gz' | |
| Content type 'application/x-gzip' length 83315 bytes (81 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 81 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/curl_0.8.tar.gz' | |
| Content type 'application/x-gzip' length 241067 bytes (235 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 235 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/xml2_0.1.1.tar.gz' | |
| Content type 'application/x-gzip' length 73772 bytes (72 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 72 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/httr_0.6.1.tar.gz' | |
| Content type 'application/x-gzip' length 247531 bytes (241 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 241 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/RCurl_1.95-4.6.tar.gz' | |
| Content type 'application/x-gzip' length 878616 bytes (858 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 858 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/memoise_0.2.1.tar.gz' | |
| Content type 'application/x-gzip' length 4212 bytes | |
| opened URL | |
| ================================================== | |
| downloaded 4212 bytes | |
| trying URL 'http://cran.r-project.org/src/contrib/whisker_0.3-2.tar.gz' | |
| Content type 'application/x-gzip' length 27707 bytes (27 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 27 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/evaluate_0.7.tar.gz' | |
| Content type 'application/x-gzip' length 17707 bytes (17 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 17 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/rstudioapi_0.3.1.tar.gz' | |
| Content type 'application/x-gzip' length 5843 bytes | |
| opened URL | |
| ================================================== | |
| downloaded 5843 bytes | |
| trying URL 'http://cran.r-project.org/src/contrib/jsonlite_0.9.16.tar.gz' | |
| Content type 'application/x-gzip' length 955572 bytes (933 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 933 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/roxygen2_4.1.1.tar.gz' | |
| Content type 'application/x-gzip' length 109554 bytes (106 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 106 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/rversions_1.0.1.tar.gz' | |
| Content type 'application/x-gzip' length 4624 bytes | |
| opened URL | |
| ================================================== | |
| downloaded 4624 bytes | |
| trying URL 'http://cran.r-project.org/src/contrib/git2r_0.10.1.tar.gz' | |
| Content type 'application/x-gzip' length 1014817 bytes (991 KB) | |
| opened URL | |
| ================================================== | |
| downloaded 991 KB | |
| trying URL 'http://cran.r-project.org/src/contrib/devtools_1.8.0.tar.gz' | |
| Content type 'application/x-gzip' length 141487 bytes (138 KB) | |
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| ================================================== | |
| downloaded 138 KB | |
| * installing *source* package ‘BH’ ... | |
| ** package ‘BH’ successfully unpacked and MD5 sums checked | |
| ** inst | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (BH) | |
| * installing *source* package ‘mime’ ... | |
| ** package ‘mime’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c rawmatch.c -o rawmatch.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o mime.so rawmatch.o -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/mime/libs | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (mime) | |
| * installing *source* package ‘R6’ ... | |
| ** package ‘R6’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (R6) | |
| * installing *source* package ‘bitops’ ... | |
| ** package ‘bitops’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c bit-ops.c -o bit-ops.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c cksum.c -o cksum.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o bitops.so bit-ops.o cksum.o -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/bitops/libs | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (bitops) | |
| * installing *source* package ‘brew’ ... | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (brew) | |
| * installing *source* package ‘curl’ ... | |
| ** package ‘curl’ successfully unpacked and MD5 sums checked | |
| Found libcurl in /usr/include/curl/curl.h | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c callbacks.c -o callbacks.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c curl.c -o curl.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c download.c -o download.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c escape.c -o escape.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c fetch.c -o fetch.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c form.c -o form.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c getdate.c -o getdate.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c handle.c -o handle.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c ieproxy.c -o ieproxy.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c init.c -o init.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c options.c -o options.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c utils.c -o utils.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/usr/include -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c version.c -o version.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o options.o utils.o version.o -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -lcurl -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/curl/libs | |
| ** R | |
| ** data | |
| *** moving datasets to lazyload DB | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (curl) | |
| * installing *source* package ‘memoise’ ... | |
| ** package ‘memoise’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (memoise) | |
| * installing *source* package ‘whisker’ ... | |
| ** package ‘whisker’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (whisker) | |
| * installing *source* package ‘evaluate’ ... | |
| ** package ‘evaluate’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (evaluate) | |
| * installing *source* package ‘rstudioapi’ ... | |
| ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (rstudioapi) | |
| * installing *source* package ‘jsonlite’ ... | |
| ** package ‘jsonlite’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| rm -f yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o yajl/yajl_version.o base64.o collapse_array.o collapse_object.o escape_chars.o is_recordlist.o is_scalarlist.o null_to_na.o parse.o prettify.o validate.o modp_numtoa.o num_to_char.o integer64_to_na.o push_parser.o collapse_pretty.o row_collapse.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl.c -o yajl/yajl.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_buf.c -o yajl/yajl_buf.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_encode.c -o yajl/yajl_encode.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_gen.c -o yajl/yajl_gen.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_lex.c -o yajl/yajl_lex.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_parser.c -o yajl/yajl_parser.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_tree.c -o yajl/yajl_tree.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c yajl/yajl_version.c -o yajl/yajl_version.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c base64.c -o base64.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c collapse_array.c -o collapse_array.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c collapse_object.c -o collapse_object.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c escape_chars.c -o escape_chars.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c is_recordlist.c -o is_recordlist.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c is_scalarlist.c -o is_scalarlist.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c null_to_na.c -o null_to_na.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c parse.c -o parse.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c prettify.c -o prettify.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c validate.c -o validate.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c modp_numtoa.c -o modp_numtoa.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c num_to_char.c -o num_to_char.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c integer64_to_na.c -o integer64_to_na.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c push_parser.c -o push_parser.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c collapse_pretty.c -o collapse_pretty.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -Iyajl -Iyajl/api -I. -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c row_collapse.c -o row_collapse.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o jsonlite.so yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o yajl/yajl_version.o base64.o collapse_array.o collapse_object.o escape_chars.o is_recordlist.o is_scalarlist.o null_to_na.o parse.o prettify.o validate.o modp_numtoa.o num_to_char.o integer64_to_na.o push_parser.o collapse_pretty.o row_collapse.o -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/jsonlite/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (jsonlite) | |
| * installing *source* package ‘git2r’ ... | |
| ** package ‘git2r’ successfully unpacked and MD5 sums checked | |
| checking build system type... x86_64-unknown-linux-gnu | |
| checking host system type... x86_64-unknown-linux-gnu | |
| checking for gcc... /bio/linuxbrew/bin/gcc-5 | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether /bio/linuxbrew/bin/gcc-5 accepts -g... yes | |
| checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO C89... none needed | |
| checking for library containing inflate... -lz | |
| checking for library containing SSL_library_init... -lssl | |
| checking for library containing EVP_EncryptInit... -lcrypto | |
| checking for library containing libssh2_version... no | |
| configure: WARNING: | |
| --------------------------------------------- | |
| Unable to find LibSSH2 on this system. | |
| Building a version without support for SSH. | |
| --------------------------------------------- | |
| checking how to run the C preprocessor... /bio/linuxbrew/bin/gcc-5 -E | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking size of void*... 8 | |
| checking for size_t... yes | |
| checking for working alloca.h... yes | |
| checking for alloca... yes | |
| checking arpa/inet.h usability... yes | |
| checking arpa/inet.h presence... yes | |
| checking for arpa/inet.h... yes | |
| checking fcntl.h usability... yes | |
| checking fcntl.h presence... yes | |
| checking for fcntl.h... yes | |
| checking for inttypes.h... (cached) yes | |
| checking langinfo.h usability... yes | |
| checking langinfo.h presence... yes | |
| checking for langinfo.h... yes | |
| checking libintl.h usability... yes | |
| checking libintl.h presence... yes | |
| checking for libintl.h... yes | |
| checking limits.h usability... yes | |
| checking limits.h presence... yes | |
| checking for limits.h... yes | |
| checking locale.h usability... yes | |
| checking locale.h presence... yes | |
| checking for locale.h... yes | |
| checking malloc.h usability... yes | |
| checking malloc.h presence... yes | |
| checking for malloc.h... yes | |
| checking netdb.h usability... yes | |
| checking netdb.h presence... yes | |
| checking for netdb.h... yes | |
| checking netinet/in.h usability... yes | |
| checking netinet/in.h presence... yes | |
| checking for netinet/in.h... yes | |
| checking stddef.h usability... yes | |
| checking stddef.h presence... yes | |
| checking for stddef.h... yes | |
| checking for stdint.h... (cached) yes | |
| checking for stdlib.h... (cached) yes | |
| checking for string.h... (cached) yes | |
| checking sys/param.h usability... yes | |
| checking sys/param.h presence... yes | |
| checking for sys/param.h... yes | |
| checking sys/socket.h usability... yes | |
| checking sys/socket.h presence... yes | |
| checking for sys/socket.h... yes | |
| checking sys/time.h usability... yes | |
| checking sys/time.h presence... yes | |
| checking for sys/time.h... yes | |
| checking for unistd.h... (cached) yes | |
| checking wchar.h usability... yes | |
| checking wchar.h presence... yes | |
| checking for wchar.h... yes | |
| checking wctype.h usability... yes | |
| checking wctype.h presence... yes | |
| checking for wctype.h... yes | |
| checking for stdbool.h that conforms to C99... yes | |
| checking for _Bool... yes | |
| checking for inline... inline | |
| checking for int16_t... yes | |
| checking for int32_t... yes | |
| checking for int64_t... yes | |
| checking for int8_t... yes | |
| checking for mode_t... yes | |
| checking for C/C++ restrict keyword... __restrict | |
| checking for size_t... (cached) yes | |
| checking for ssize_t... yes | |
| checking for struct stat.st_rdev... yes | |
| checking for uint16_t... yes | |
| checking for uint32_t... yes | |
| checking for uint64_t... yes | |
| checking for uint8_t... yes | |
| checking for error_at_line... yes | |
| checking for stdlib.h... (cached) yes | |
| checking for GNU libc compatible malloc... yes | |
| checking whether time.h and sys/time.h may both be included... yes | |
| checking for sys/time.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for stdlib.h... (cached) yes | |
| checking for sys/param.h... (cached) yes | |
| checking for alarm... yes | |
| checking for working mktime... yes | |
| checking for getpagesize... yes | |
| checking for working mmap... yes | |
| checking for stdlib.h... (cached) yes | |
| checking for GNU libc compatible realloc... yes | |
| checking for btowc... yes | |
| checking for clock_gettime... yes | |
| checking for getcwd... yes | |
| checking for gethostbyname... yes | |
| checking for gettimeofday... yes | |
| checking for isascii... yes | |
| checking for memchr... yes | |
| checking for memmove... yes | |
| checking for memset... yes | |
| checking for munmap... yes | |
| checking for pstat_getdynamic... no | |
| checking for re_comp... yes | |
| checking for realpath... yes | |
| checking for regcomp... yes | |
| checking for select... yes | |
| checking for socket... yes | |
| checking for strcasecmp... yes | |
| checking for strchr... yes | |
| checking for strcspn... yes | |
| checking for strdup... yes | |
| checking for strerror... yes | |
| checking for strncasecmp... yes | |
| checking for strrchr... yes | |
| checking for strspn... yes | |
| checking for strstr... yes | |
| checking for strtol... yes | |
| checking for strtoul... yes | |
| configure: creating ./config.status | |
| config.status: creating src/Makevars | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/annotated_commit.c -o libgit2/annotated_commit.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/attr.c -o libgit2/attr.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/attrcache.c -o libgit2/attrcache.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/attr_file.c -o libgit2/attr_file.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/blame.c -o libgit2/blame.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/blame_git.c -o libgit2/blame_git.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/blob.c -o libgit2/blob.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/branch.c -o libgit2/branch.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/buffer.c -o libgit2/buffer.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/buf_text.c -o libgit2/buf_text.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/cache.c -o libgit2/cache.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/checkout.c -o libgit2/checkout.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/cherrypick.c -o libgit2/cherrypick.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/clone.c -o libgit2/clone.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/commit.c -o libgit2/commit.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/commit_list.c -o libgit2/commit_list.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/config.c -o libgit2/config.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/config_cache.c -o libgit2/config_cache.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/config_file.c -o libgit2/config_file.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/crlf.c -o libgit2/crlf.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/date.c -o libgit2/date.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/delta-apply.c -o libgit2/delta-apply.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/delta.c -o libgit2/delta.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/describe.c -o libgit2/describe.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff.c -o libgit2/diff.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff_driver.c -o libgit2/diff_driver.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff_file.c -o libgit2/diff_file.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff_patch.c -o libgit2/diff_patch.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff_print.c -o libgit2/diff_print.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff_stats.c -o libgit2/diff_stats.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff_tform.c -o libgit2/diff_tform.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/diff_xdiff.c -o libgit2/diff_xdiff.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/errors.c -o libgit2/errors.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/fetch.c -o libgit2/fetch.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/fetchhead.c -o libgit2/fetchhead.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/filebuf.c -o libgit2/filebuf.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/fileops.c -o libgit2/fileops.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/filter.c -o libgit2/filter.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/fnmatch.c -o libgit2/fnmatch.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/global.c -o libgit2/global.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/graph.c -o libgit2/graph.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/hash.c -o libgit2/hash.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/hashsig.c -o libgit2/hashsig.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/ident.c -o libgit2/ident.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/ignore.c -o libgit2/ignore.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/index.c -o libgit2/index.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/indexer.c -o libgit2/indexer.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/iterator.c -o libgit2/iterator.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/merge.c -o libgit2/merge.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/merge_file.c -o libgit2/merge_file.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/message.c -o libgit2/message.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/mwindow.c -o libgit2/mwindow.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/netops.c -o libgit2/netops.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/notes.c -o libgit2/notes.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/object_api.c -o libgit2/object_api.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/object.c -o libgit2/object.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/odb.c -o libgit2/odb.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/odb_loose.c -o libgit2/odb_loose.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/odb_mempack.c -o libgit2/odb_mempack.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/odb_pack.c -o libgit2/odb_pack.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/oidarray.c -o libgit2/oidarray.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/oid.c -o libgit2/oid.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/openssl_stream.c -o libgit2/openssl_stream.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/pack.c -o libgit2/pack.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/pack-objects.c -o libgit2/pack-objects.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/path.c -o libgit2/path.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/pathspec.c -o libgit2/pathspec.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/pool.c -o libgit2/pool.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/posix.c -o libgit2/posix.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/pqueue.c -o libgit2/pqueue.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/push.c -o libgit2/push.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/rebase.c -o libgit2/rebase.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/refdb.c -o libgit2/refdb.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/refdb_fs.c -o libgit2/refdb_fs.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/reflog.c -o libgit2/reflog.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/refs.c -o libgit2/refs.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/refspec.c -o libgit2/refspec.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/remote.c -o libgit2/remote.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/repository.c -o libgit2/repository.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/reset.c -o libgit2/reset.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/revert.c -o libgit2/revert.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/revparse.c -o libgit2/revparse.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/revwalk.c -o libgit2/revwalk.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/settings.c -o libgit2/settings.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/sha1_lookup.c -o libgit2/sha1_lookup.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/signature.c -o libgit2/signature.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/socket_stream.c -o libgit2/socket_stream.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/sortedcache.c -o libgit2/sortedcache.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/stash.c -o libgit2/stash.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/status.c -o libgit2/status.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/strmap.c -o libgit2/strmap.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/submodule.c -o libgit2/submodule.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/sysdir.c -o libgit2/sysdir.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/tag.c -o libgit2/tag.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/thread-utils.c -o libgit2/thread-utils.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/trace.c -o libgit2/trace.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transaction.c -o libgit2/transaction.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transport.c -o libgit2/transport.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/tree.c -o libgit2/tree.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/tree-cache.c -o libgit2/tree-cache.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/tsort.c -o libgit2/tsort.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/util.c -o libgit2/util.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/vector.c -o libgit2/vector.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/zstream.c -o libgit2/zstream.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/auth.c -o libgit2/transports/auth.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/cred.c -o libgit2/transports/cred.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/cred_helpers.c -o libgit2/transports/cred_helpers.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/git.c -o libgit2/transports/git.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/http.c -o libgit2/transports/http.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/local.c -o libgit2/transports/local.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/smart.c -o libgit2/transports/smart.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/smart_pkt.c -o libgit2/transports/smart_pkt.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/smart_protocol.c -o libgit2/transports/smart_protocol.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/transports/ssh.c -o libgit2/transports/ssh.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/unix/map.c -o libgit2/unix/map.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/unix/realpath.c -o libgit2/unix/realpath.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/xdiff/xdiffi.c -o libgit2/xdiff/xdiffi.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/xdiff/xemit.c -o libgit2/xdiff/xemit.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/xdiff/xhistogram.c -o libgit2/xdiff/xhistogram.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/xdiff/xmerge.c -o libgit2/xdiff/xmerge.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/xdiff/xpatience.c -o libgit2/xdiff/xpatience.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/xdiff/xprepare.c -o libgit2/xdiff/xprepare.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c libgit2/xdiff/xutils.c -o libgit2/xdiff/xutils.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c http-parser/http_parser.c -o http-parser/http_parser.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_arg.c -o git2r_arg.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_blame.c -o git2r_blame.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_blob.c -o git2r_blob.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_branch.c -o git2r_branch.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r.c -o git2r.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_checkout.c -o git2r_checkout.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_clone.c -o git2r_clone.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_commit.c -o git2r_commit.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_config.c -o git2r_config.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_cred.c -o git2r_cred.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_diff.c -o git2r_diff.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_error.c -o git2r_error.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_graph.c -o git2r_graph.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_index.c -o git2r_index.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_libgit2.c -o git2r_libgit2.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_merge.c -o git2r_merge.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_note.c -o git2r_note.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_object.c -o git2r_object.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_odb.c -o git2r_odb.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_oid.c -o git2r_oid.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_push.c -o git2r_push.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_reference.c -o git2r_reference.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_reflog.c -o git2r_reflog.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_remote.c -o git2r_remote.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_repository.c -o git2r_repository.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_reset.c -o git2r_reset.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_revparse.c -o git2r_revparse.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_revwalk.c -o git2r_revwalk.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_signature.c -o git2r_signature.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_stash.c -o git2r_stash.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_status.c -o git2r_status.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_tag.c -o git2r_tag.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_transfer.c -o git2r_transfer.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c git2r_tree.c -o git2r_tree.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o git2r.so libgit2/annotated_commit.o libgit2/attr.o libgit2/attrcache.o libgit2/attr_file.o libgit2/blame.o libgit2/blame_git.o libgit2/blob.o libgit2/branch.o libgit2/buffer.o libgit2/buf_text.o libgit2/cache.o libgit2/checkout.o libgit2/cherrypick.o libgit2/clone.o libgit2/commit.o libgit2/commit_list.o libgit2/config.o libgit2/config_cache.o libgit2/config_file.o libgit2/crlf.o libgit2/date.o libgit2/delta-apply.o libgit2/delta.o libgit2/describe.o libgit2/diff.o libgit2/diff_driver.o libgit2/diff_file.o libgit2/diff_patch.o libgit2/diff_print.o libgit2/diff_stats.o libgit2/diff_tform.o libgit2/diff_xdiff.o libgit2/errors.o libgit2/fetch.o libgit2/fetchhead.o libgit2/filebuf.o libgit2/fileops.o libgit2/filter.o libgit2/fnmatch.o libgit2/global.o libgit2/graph.o libgit2/hash.o libgit2/hashsig.o libgit2/ident.o libgit2/ignore.o libgit2/index.o libgit2/indexer.o libgit2/iterator.o libgit2/merge.o libgit2/merge_file.o libgit2/message.o libgit2/mwindow.o libgit2/netops.o libgit2/notes.o libgit2/object_api.o libgit2/object.o libgit2/odb.o libgit2/odb_loose.o libgit2/odb_mempack.o libgit2/odb_pack.o libgit2/oidarray.o libgit2/oid.o libgit2/openssl_stream.o libgit2/pack.o libgit2/pack-objects.o libgit2/path.o libgit2/pathspec.o libgit2/pool.o libgit2/posix.o libgit2/pqueue.o libgit2/push.o libgit2/rebase.o libgit2/refdb.o libgit2/refdb_fs.o libgit2/reflog.o libgit2/refs.o libgit2/refspec.o libgit2/remote.o libgit2/repository.o libgit2/reset.o libgit2/revert.o libgit2/revparse.o libgit2/revwalk.o libgit2/settings.o libgit2/sha1_lookup.o libgit2/signature.o libgit2/socket_stream.o libgit2/sortedcache.o libgit2/stash.o libgit2/status.o libgit2/strmap.o libgit2/submodule.o libgit2/sysdir.o libgit2/tag.o libgit2/thread-utils.o libgit2/trace.o libgit2/transaction.o libgit2/transport.o libgit2/tree.o libgit2/tree-cache.o libgit2/tsort.o libgit2/util.o libgit2/vector.o libgit2/zstream.o libgit2/transports/auth.o libgit2/transports/cred.o libgit2/transports/cred_helpers.o libgit2/transports/git.o libgit2/transports/http.o libgit2/transports/local.o libgit2/transports/smart.o libgit2/transports/smart_pkt.o libgit2/transports/smart_protocol.o libgit2/transports/ssh.o libgit2/unix/map.o libgit2/unix/realpath.o libgit2/xdiff/xdiffi.o libgit2/xdiff/xemit.o libgit2/xdiff/xhistogram.o libgit2/xdiff/xmerge.o libgit2/xdiff/xpatience.o libgit2/xdiff/xprepare.o libgit2/xdiff/xutils.o http-parser/http_parser.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lcrypto -lssl -lz -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/git2r/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| Creating a generic function for ‘summary’ from package ‘base’ in package ‘git2r’ | |
| Creating a generic function for ‘diff’ from package ‘base’ in package ‘git2r’ | |
| Creating a generic function for ‘merge’ from package ‘base’ in package ‘git2r’ | |
| Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘git2r’ | |
| Creating a generic function for ‘head’ from package ‘utils’ in package ‘git2r’ | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (git2r) | |
| * installing *source* package ‘xml2’ ... | |
| ** package ‘xml2’ successfully unpacked and MD5 sums checked | |
| Found libxml2 in -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 | |
| ** libs | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c RcppExports.cpp -o RcppExports.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c connection.cpp -o connection.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c xml2_doc.cpp -o xml2_doc.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c xml2_init.cpp -o xml2_init.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c xml2_namespace.cpp -o xml2_namespace.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c xml2_node.cpp -o xml2_node.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c xml2_url.cpp -o xml2_url.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c xml2_xpath.cpp -o xml2_xpath.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -I"/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/BH/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c xml_push.cpp -o xml_push.o | |
| /bio/linuxbrew/bin/g++-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o xml2.so RcppExports.o connection.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_url.o xml2_xpath.o xml_push.o -L/bio/linuxbrew/Cellar/libxml2/2.9.2/lib -lxml2 -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/xml2/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (xml2) | |
| * installing *source* package ‘RCurl’ ... | |
| ** package ‘RCurl’ successfully unpacked and MD5 sums checked | |
| checking for curl-config... /bio/linuxbrew/bin/curl-config | |
| checking for gcc... /bio/linuxbrew/bin/gcc-5 | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether /bio/linuxbrew/bin/gcc-5 accepts -g... yes | |
| checking for /bio/linuxbrew/bin/gcc-5 option to accept ISO C89... none needed | |
| checking how to run the C preprocessor... /bio/linuxbrew/bin/gcc-5 -E | |
| Version has a libidn field | |
| Version has CURLOPT_URL | |
| Version has CURLINFO_EFFECTIVE_URL | |
| Version has CURLINFO_RESPONSE_CODE | |
| Version has CURLINFO_TOTAL_TIME | |
| Version has CURLINFO_NAMELOOKUP_TIME | |
| Version has CURLINFO_CONNECT_TIME | |
| Version has CURLINFO_PRETRANSFER_TIME | |
| Version has CURLINFO_SIZE_UPLOAD | |
| Version has CURLINFO_SIZE_DOWNLOAD | |
| Version has CURLINFO_SPEED_DOWNLOAD | |
| Version has CURLINFO_SPEED_UPLOAD | |
| Version has CURLINFO_HEADER_SIZE | |
| Version has CURLINFO_REQUEST_SIZE | |
| Version has CURLINFO_SSL_VERIFYRESULT | |
| Version has CURLINFO_FILETIME | |
| Version has CURLINFO_CONTENT_LENGTH_DOWNLOAD | |
| Version has CURLINFO_CONTENT_LENGTH_UPLOAD | |
| Version has CURLINFO_STARTTRANSFER_TIME | |
| Version has CURLINFO_CONTENT_TYPE | |
| Version has CURLINFO_REDIRECT_TIME | |
| Version has CURLINFO_REDIRECT_COUNT | |
| Version has CURLINFO_PRIVATE | |
| Version has CURLINFO_HTTP_CONNECTCODE | |
| Version has CURLINFO_HTTPAUTH_AVAIL | |
| Version has CURLINFO_PROXYAUTH_AVAIL | |
| Version has CURLINFO_OS_ERRNO | |
| Version has CURLINFO_NUM_CONNECTS | |
| Version has CURLINFO_SSL_ENGINES | |
| Version has CURLINFO_COOKIELIST | |
| Version has CURLINFO_LASTSOCKET | |
| Version has CURLINFO_FTP_ENTRY_PATH | |
| Version has CURLINFO_REDIRECT_URL | |
| Version has CURLINFO_PRIMARY_IP | |
| Version has CURLINFO_APPCONNECT_TIME | |
| Version has CURLINFO_CERTINFO | |
| Version has CURLINFO_CONDITION_UNMET | |
| Version has CURLOPT_WRITEDATA | |
| Version has CURLOPT_KEYPASSWD | |
| Version has CURLOPT_DIRLISTONLY | |
| Version has CURLOPT_APPEND | |
| Version has CURLOPT_KRBLEVEL | |
| Version has CURLOPT_USE_SSL | |
| Version has CURLOPT_TIMEOUT_MS | |
| Version has CURLOPT_CONNECTTIMEOUT_MS | |
| Version has CURLOPT_HTTP_TRANSFER_DECODING | |
| Version has CURLOPT_HTTP_CONTENT_DECODING | |
| Version has CURLOPT_NEW_FILE_PERMS | |
| Version has CURLOPT_NEW_DIRECTORY_PERMS | |
| Version has CURLOPT_POSTREDIR | |
| Version has CURLOPT_OPENSOCKETFUNCTION | |
| Version has CURLOPT_OPENSOCKETDATA | |
| Version has CURLOPT_COPYPOSTFIELDS | |
| Version has CURLOPT_PROXY_TRANSFER_MODE | |
| Version has CURLOPT_SEEKFUNCTION | |
| Version has CURLOPT_SEEKDATA | |
| Version has CURLOPT_CRLFILE | |
| Version has CURLOPT_ISSUERCERT | |
| Version has CURLOPT_ADDRESS_SCOPE | |
| Version has CURLOPT_CERTINFO | |
| Version has CURLOPT_USERNAME | |
| Version has CURLOPT_PASSWORD | |
| Version has CURLOPT_PROXYUSERNAME | |
| Version has CURLOPT_PROXYPASSWORD | |
| Version has CURLOPT_SSH_HOST_PUBLIC_KEY_MD5 | |
| Version has CURLOPT_NOPROXY | |
| Version has CURLOPT_TFTP_BLKSIZE | |
| Version has CURLOPT_SOCKS5_GSSAPI_SERVICE | |
| Version has CURLOPT_SOCKS5_GSSAPI_NEC | |
| Version has CURLOPT_PROTOCOLS | |
| Version has CURLOPT_REDIR_PROTOCOLS | |
| Version has CURLOPT_SSH_AUTH_TYPES | |
| Version has CURLOPT_SSH_PUBLIC_KEYFILE | |
| Version has CURLOPT_SSH_PRIVATE_KEYFILE | |
| Version has CURLOPT_FTP_SSL_CCC | |
| Version has CURLOPT_COOKIELIST | |
| Version has CURLOPT_IGNORE_CONTENT_LENGTH | |
| Version has CURLOPT_FTP_SKIP_PASV_IP | |
| Version has CURLOPT_FTP_FILEMETHOD | |
| Version has CURLOPT_LOCALPORT | |
| Version has CURLOPT_LOCALPORTRANGE | |
| Version has CURLOPT_CONNECT_ONLY | |
| Version has CURLOPT_CONV_FROM_NETWORK_FUNCTION | |
| Version has CURLOPT_CONV_TO_NETWORK_FUNCTION | |
| Version has CURLOPT_CONV_FROM_UTF8_FUNCTION | |
| Version has CURLOPT_MAX_SEND_SPEED_LARGE | |
| Version has CURLOPT_MAX_RECV_SPEED_LARGE | |
| Version has CURLOPT_FTP_ALTERNATIVE_TO_USER | |
| Version has CURLOPT_SOCKOPTFUNCTION | |
| Version has CURLOPT_SOCKOPTDATA | |
| Version has CURLOPT_SSL_SESSIONID_CACHE | |
| libcurl version: libcurl 7.42.1 | |
| configure: creating ./config.status | |
| config.status: creating src/Makevars | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c base64.c -o base64.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c curl.c -o curl.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c curlInit.c -o curlInit.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c curl_base64.c -o curl_base64.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c enums.c -o enums.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c json.c -o json.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c memoryManagement.c -o memoryManagement.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -I/bio/linuxbrew/Cellar/curl/7.42.1/include -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/bio/linuxbrew/Cellar/libxml2/2.9.2/include/libxml2 -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c myUTF8.c -o myUTF8.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o RCurl.so base64.o curl.o curlInit.o curl_base64.o enums.o json.o memoryManagement.o myUTF8.o -L/bio/linuxbrew/Cellar/curl/7.42.1/lib -lcurl -L/bio/linuxbrew/Cellar/libxml2/2.9.2/lib -lxml2 -lz -lm -ldl -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/RCurl/libs | |
| ** R | |
| ** data | |
| ** inst | |
| ** preparing package for lazy loading | |
| Creating a generic function for ‘close’ from package ‘base’ in package ‘RCurl’ | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (RCurl) | |
| * installing *source* package ‘roxygen2’ ... | |
| ** package ‘roxygen2’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c RcppExports.cpp -o RcppExports.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c isComplete.cpp -o isComplete.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c leadingSpaces.cpp -o leadingSpaces.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c parser.cpp -o parser.o | |
| /bio/linuxbrew/bin/g++-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -I"/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/library/Rcpp/include" -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c wrapString.cpp -o wrapString.o | |
| /bio/linuxbrew/bin/g++-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o roxygen2.so RcppExports.o isComplete.o leadingSpaces.o parser.o wrapString.o -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/roxygen2/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (roxygen2) | |
| * installing *source* package ‘httr’ ... | |
| ** package ‘httr’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c writer.c -o writer.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o httr.so writer.o -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/httr/libs | |
| ** R | |
| ** demo | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (httr) | |
| * installing *source* package ‘rversions’ ... | |
| ** package ‘rversions’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (rversions) | |
| * installing *source* package ‘devtools’ ... | |
| ** package ‘devtools’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c devtools.c -o devtools.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o devtools.so devtools.o -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/devtools/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (devtools) | |
| The downloaded source packages are in | |
| ‘/tmp/Rtmp4dhAZF/downloaded_packages’ | |
| > | |
| > |
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| 2015-06-10 20:02:42 +1000 | |
| R | |
| -q | |
| -e | |
| library(devtools); install(pkg='.', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library') | |
| > library(devtools); install(pkg='.', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library') | |
| Installing codetools | |
| '/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/bin/R' --no-site-file --no-environ \ | |
| --no-save --no-restore CMD INSTALL \ | |
| '/tmp/poretools--codetools20150610-70895-1vkpqdr/codetools' \ | |
| --library='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library' \ | |
| --install-tests | |
| * installing *source* package ‘codetools’ ... | |
| ** package ‘codetools’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** tests | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (codetools) | |
| > | |
| > |
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| 2015-06-10 20:02:52 +1000 | |
| R | |
| -q | |
| -e | |
| library(devtools); install(pkg='.', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library') | |
| > library(devtools); install(pkg='.', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library') | |
| Installing MASS | |
| '/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/bin/R' --no-site-file --no-environ \ | |
| --no-save --no-restore CMD INSTALL \ | |
| '/tmp/poretools--MASS20150610-70895-2po6bg/MASS' \ | |
| --library='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library' \ | |
| --install-tests | |
| * installing *source* package ‘MASS’ ... | |
| ** package ‘MASS’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c MASS.c -o MASS.o | |
| /bio/linuxbrew/bin/gcc-5 -I/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/include -DNDEBUG -isystem/bio/linuxbrew/include -I/bio/linuxbrew/opt/gettext/include -I/bio/linuxbrew/opt/readline/include -fpic -Os -w -pipe -march=core2 -D__ACCELERATE__ -c lqs.c -o lqs.o | |
| /bio/linuxbrew/bin/gcc-5 -shared -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -Wl,-rpath,/bio/linuxbrew/lib -L/bio/linuxbrew/opt/gettext/lib -L/bio/linuxbrew/opt/readline/lib -o MASS.so MASS.o lqs.o -L/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/lib -lR | |
| installing to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library/MASS/libs | |
| ** R | |
| ** data | |
| *** moving datasets to lazyload DB | |
| ** inst | |
| ** tests | |
| ** byte-compile and prepare package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (MASS) | |
| > | |
| > |
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| 2015-06-10 20:03:09 +1000 | |
| R | |
| -q | |
| -e | |
| library(devtools); install(pkg='.', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library') | |
| > library(devtools); install(pkg='.', lib='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library') | |
| Installing ggplot2 | |
| '/bio/linuxbrew/Cellar/r/3.1.3/lib64/R/bin/R' --no-site-file --no-environ \ | |
| --no-save --no-restore CMD INSTALL \ | |
| '/tmp/poretools--ggplot220150610-70895-pu7fca/ggplot2' \ | |
| --library='/bio/linuxbrew/Cellar/poretools/0.5.1/libexec/vendor/R/library' \ | |
| --install-tests | |
| * installing *source* package ‘ggplot2’ ... | |
| ** package ‘ggplot2’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| *** moving datasets to lazyload DB | |
| ** inst | |
| ** tests | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (ggplot2) | |
| > | |
| > |
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| 2015-06-10 20:03:17 +1000 | |
| python | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/poretools/0.5.1/libexec | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib | |
| creating build/lib/poretools | |
| copying poretools/Event.py -> build/lib/poretools | |
| copying poretools/Fast5File.py -> build/lib/poretools | |
| copying poretools/Fast5File_pytables.py -> build/lib/poretools | |
| copying poretools/__init__.py -> build/lib/poretools | |
| copying poretools/combine.py -> build/lib/poretools | |
| copying poretools/events.py -> build/lib/poretools | |
| copying poretools/fasta.py -> build/lib/poretools | |
| copying poretools/fastq.py -> build/lib/poretools | |
| copying poretools/formats.py -> build/lib/poretools | |
| copying poretools/hist.py -> build/lib/poretools | |
| copying poretools/nucdist.py -> build/lib/poretools | |
| copying poretools/occupancy.py -> build/lib/poretools | |
| copying poretools/poretools_main.py -> build/lib/poretools | |
| copying poretools/qualdist.py -> build/lib/poretools | |
| copying poretools/readstats.py -> build/lib/poretools | |
| copying poretools/squiggle.py -> build/lib/poretools | |
| copying poretools/statistics.py -> build/lib/poretools | |
| copying poretools/stats.py -> build/lib/poretools | |
| copying poretools/tabular.py -> build/lib/poretools | |
| copying poretools/times.py -> build/lib/poretools | |
| copying poretools/version.py -> build/lib/poretools | |
| copying poretools/windows.py -> build/lib/poretools | |
| copying poretools/winner.py -> build/lib/poretools | |
| copying poretools/yield_plot.py -> build/lib/poretools | |
| creating build/lib/poretools/scripts | |
| copying poretools/scripts/__init__.py -> build/lib/poretools/scripts | |
| copying poretools/scripts/poretools-script.py -> build/lib/poretools/scripts | |
| running egg_info | |
| creating poretools.egg-info | |
| writing requirements to poretools.egg-info/requires.txt | |
| writing poretools.egg-info/PKG-INFO | |
| writing top-level names to poretools.egg-info/top_level.txt | |
| writing dependency_links to poretools.egg-info/dependency_links.txt | |
| writing entry points to poretools.egg-info/entry_points.txt | |
| writing manifest file 'poretools.egg-info/SOURCES.txt' | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'poretools.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| warning: manifest_maker: MANIFEST.in, line 1: unknown action 'requirements.txt' | |
| writing manifest file 'poretools.egg-info/SOURCES.txt' | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/Event.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/Fast5File.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/Fast5File_pytables.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/combine.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/events.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/fasta.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/fastq.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/formats.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/hist.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/nucdist.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/occupancy.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/poretools_main.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/qualdist.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/readstats.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/squiggle.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/statistics.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/stats.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/tabular.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/times.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/version.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/windows.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/winner.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| copying build/lib/poretools/yield_plot.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools | |
| creating /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/scripts | |
| copying build/lib/poretools/scripts/__init__.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/scripts | |
| copying build/lib/poretools/scripts/poretools-script.py -> /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/scripts | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/Event.py to Event.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/Fast5File.py to Fast5File.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/Fast5File_pytables.py to Fast5File_pytables.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/combine.py to combine.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/events.py to events.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/fasta.py to fasta.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/fastq.py to fastq.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/formats.py to formats.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/hist.py to hist.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/nucdist.py to nucdist.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/occupancy.py to occupancy.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/poretools_main.py to poretools_main.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/qualdist.py to qualdist.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/readstats.py to readstats.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/squiggle.py to squiggle.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/statistics.py to statistics.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/stats.py to stats.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/tabular.py to tabular.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/times.py to times.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/version.py to version.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/windows.py to windows.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/winner.py to winner.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/yield_plot.py to yield_plot.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/scripts/__init__.py to __init__.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools/scripts/poretools-script.py to poretools-script.pyc | |
| running install_egg_info | |
| Copying poretools.egg-info to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/lib/python2.7/site-packages/poretools-0.5.1-py2.7.egg-info | |
| running install_scripts | |
| Installing poretools script to /bio/linuxbrew/Cellar/poretools/0.5.1/libexec/bin | |
| writing list of installed files to 'installed.txt' |
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| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/linuxbrew | |
| HEAD: 6e8fbc0857c89a84fbd06cd3d6fed2a715a99369 | |
| Last commit: 12 hours ago | |
| HOMEBREW_PREFIX: /bio/linuxbrew | |
| HOMEBREW_CELLAR: /bio/linuxbrew/Cellar | |
| CPU: 72-core 64-bit 6 | |
| OS X: 0-x86_64 | |
| Xcode: N/A | |
| CLT: N/A | |
| Clang: N/A | |
| X11: N/A | |
| System Ruby: 2.2.2 => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Perl: /usr/bin/perl | |
| Python: /bio/python/bin/python | |
| Ruby: /bio/linuxbrew/bin/ruby => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Java: 1.7.0_79 |
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| Warning: "config" scripts exist outside your system or Homebrew directories. | |
| `./configure` scripts often look for *-config scripts to determine if | |
| software packages are installed, and what additional flags to use when | |
| compiling and linking. | |
| Having additional scripts in your path can confuse software installed via | |
| Homebrew if the config script overrides a system or Homebrew provided | |
| script of the same name. We found the following "config" scripts: | |
| /bio/python/bin/python-config | |
| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry and just ignore them. Thanks! | |
| Warning: You have unlinked kegs in your Cellar | |
| Leaving kegs unlinked can lead to build-trouble and cause brews that depend on | |
| those kegs to fail to run properly once built. Run `brew link` on these: | |
| python | |
| python3 | |
| Warning: Homebrew's sbin was not found in your PATH but you have installed | |
| formulae that put executables in /bio/linuxbrew/sbin. | |
| Consider setting the PATH for example like so | |
| echo 'export PATH="/bio/linuxbrew/sbin:$PATH"' >> ~/.bash_profile | |
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| Formula: poretools | |
| Tap: homebrew/homebrew-science | |
| Path: /bio/linuxbrew/Library/Taps/homebrew/homebrew-science/poretools.rb |
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