Created
May 31, 2015 02:21
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| 2015-05-31 12:19:40 +1000 | |
| ./configure | |
| --prefix=/bio/linuxbrew/Cellar/sratoolkit/2.5.0 | |
| --build=/bio/linuxbrew/Cellar/sratoolkit/2.5.0 | |
| Configuring NGS-SDK package | |
| checking system type... Linux | |
| checking machine architecture... x86_64 | |
| checking NGS-SDK version... 1.1.1 | |
| checking for supported architecture... x86_64 (64 bits) is supported | |
| checking for supported OS... Linux (linux) is supported | |
| checking for supported tool chain... gcc tool chain is supported | |
| checking for g++... yes | |
| checking whether gcc accepts -Wno-array-bounds... yes | |
| configure: creating 'Makefile.config.linux.x86_64' | |
| configure: creating 'Makefile.config.install.linux.x86_64.prl' | |
| configure: creating 'Makefile.config' | |
| configure: creating 'reconfigure' | |
| build type: release | |
| build prefix: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk | |
| build output path: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel | |
| includedir: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/include | |
| bindir: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/bin | |
| libdir: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib | |
| sharedir: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/share | |
| CC = gcc -c | |
| CPP = g++ | |
| configured with: "'--prefix=/bio/linuxbrew/Cellar/sratoolkit/2.5.0' '--build=/bio/linuxbrew/Cellar/sratoolkit/2.5.0'" |
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| 2015-05-31 12:19:40 +1000 | |
| make | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++ | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++ -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| ar rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadCollection.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReferenceIterator.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Reference.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupIterator.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Pileup.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEventIterator.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/PileupEvent.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/AlignmentIterator.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Alignment.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroupIterator.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadGroup.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/ReadIterator.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Read.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/FragmentIterator.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Fragment.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/Statistics.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/c++/StringRef.pic.o | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| ar rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReferenceItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_PileupEventItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_AlignmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadGroupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ReadItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_FragmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_StatisticsItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_String.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_Refcount.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/java/jni_ErrorMsg.pic.o | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ErrorMsg.pic.o py_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| ar rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ErrorMsg.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_PileupIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadCollectionItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReadIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StatisticsItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_Refcount.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/language/python/py_StringItf.pic.o | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python' | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| ar rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadCollectionItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReferenceItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/PileupEventItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/AlignmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadGroupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ReadItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/FragmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StatisticsItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/StringItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/Refcount.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/VTable.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrBlock.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/dispatch/ErrorMsg.pic.o | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| ar rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.1.1.1 /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadCollectionItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/PileupEventItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReferenceItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/AlignmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadGroupItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ReadItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/FragmentItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StatisticsItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/StringItf.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/Refcount.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrorMsg.pic.o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/adapter/ErrBlock.pic.o | |
| rm -f /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.1 | |
| ln -s libngs-adapt-c++.a.1.1.1 /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a.1 | |
| rm -f /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a | |
| ln -s libngs-adapt-c++.a.1 /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-adapt-c++.a | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk' | |
| rm -rf /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++ | |
| ( cd /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++; ar x /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a; ar t /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/bio\/linuxbrew\/Cellar\/sratoolkit\/2.5.0\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-c++\/\1/' > /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest ) | |
| rm -rf /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp | |
| ( cd /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp; ar x /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a; ar t /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/bio\/linuxbrew\/Cellar\/sratoolkit\/2.5.0\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-disp\/\1/' > /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest ) | |
| ( ar rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.1.1.1 `cat /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-c++/manifest /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-disp/manifest` ) | |
| rm -f /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.1 | |
| ln -s libngs-c++.a.1.1.1 /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a.1 | |
| rm -f /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a | |
| ln -s libngs-c++.a.1 /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-c++.a | |
| rm -rf /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java | |
| ( cd /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java; ar x /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a; ar t /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/bio\/linuxbrew\/Cellar\/sratoolkit\/2.5.0\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-java\/\1/' > /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest ) | |
| rm -rf /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python | |
| ( cd /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python; ar x /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a; ar t /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/bio\/linuxbrew\/Cellar\/sratoolkit\/2.5.0\/ngs-sdk\/linux\/gcc\/x86_64\/rel\/obj\/ngs-bind-python\/\1/' > /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest ) | |
| g++ -DNDEBUG -O3 -shared -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.1.1.1 -Wl,-soname=libngs-sdk.so.1 `cat /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-java/manifest /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/ngs-bind-python/manifest` -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib -lngs-disp | |
| rm -f /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.1 | |
| ln -s libngs-sdk.so.1.1.1 /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so.1 | |
| rm -f /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so | |
| ln -s libngs-sdk.so.1 /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libngs-sdk.so | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk' |
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| 2015-05-31 12:19:54 +1000 | |
| make | |
| test | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++' | |
| make[2]: Nothing to be done for `default'. | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/c++' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java' | |
| make[2]: Nothing to be done for `default'. | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/java' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python' | |
| make[2]: Nothing to be done for `default'. | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language/python' | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch' | |
| make[1]: Nothing to be done for `default'. | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter' | |
| make[1]: Nothing to be done for `default'. | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk' | |
| make[1]: Nothing to be done for `default'. | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test/test_engine' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test/test_engine -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -DNDEBUG -O3 --shared -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib/libtest_engine.so /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/test/test_engine/test_engine.pic.o -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test/test_engine' | |
| make[2]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test/ngs-test' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/bin | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test | |
| g++ -c -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test/ngs-test -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk -I/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/ngs/unix/x86_64 -MD | |
| g++ -DNDEBUG -O3 -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/bin/test-ngs /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/obj/test/ngs-test/main.o -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/lib -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp | |
| Running std /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ngs-sdk/linux/gcc/x86_64/rel/bin/test-ngs ... | |
| Test cases run: 104 | |
| Test cases passed: 104 | |
| make[2]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test/ngs-test' | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/test' |
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| 2015-05-31 12:19:57 +1000 | |
| make | |
| install | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language' | |
| make[1]: Nothing to be done for `install'. | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/language' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch' | |
| make[1]: Nothing to be done for `install'. | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/dispatch' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter' | |
| make[1]: Nothing to be done for `install'. | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk/adapter' | |
| make[1]: Entering directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk' | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib64 | |
| installing 'libngs-sdk.so.1.1.1'... success | |
| installing 'libngs-c++.a.1.1.1'... success | |
| installing 'libngs-adapt-c++.a.1.1.1'... success | |
| Installing includes to /bio/linuxbrew/Cellar/sratoolkit/2.5.0/include | |
| Installing examples to /bio/linuxbrew/Cellar/sratoolkit/2.5.0/share | |
| Please add /bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib64 to your LD_LIBRARY_PATH, e.g.: | |
| export LD_LIBRARY_PATH=/bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib64:$LD_LIBRARY_PATH | |
| Use /bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib64 in your link commands, e.g.: | |
| export NGS_LIBDIR=/bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib64 | |
| ld -L$NGS_LIBDIR -lngs-sdk ... | |
| make[1]: Leaving directory `/tmp/sratoolkit--ngs-sdk20150531-97164-1r4moo5/ngs-1.1.1/ngs-sdk' |
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| 2015-05-31 12:19:57 +1000 | |
| ./configure | |
| --with-ngs-sdk-prefix=/bio/linuxbrew/Cellar/sratoolkit/2.5.0 | |
| --prefix=/bio/linuxbrew/Cellar/sratoolkit/2.5.0 | |
| --build=/bio/linuxbrew/Cellar/sratoolkit/2.5.0 | |
| Configuring NCBI-VDB package | |
| checking system type... Linux | |
| checking machine architecture... x86_64 | |
| checking NCBI-VDB version... 2.5.0 | |
| checking for supported architecture... x86_64 (64 bits) is supported | |
| checking for supported OS... Linux (linux) is supported | |
| checking for supported tool chain... gcc tool chain is supported | |
| checking for g++... yes | |
| checking whether gcc accepts -Wno-array-bounds... yes | |
| checking for hdf5 library... no | |
| checking for magic library... no | |
| checking for xml2 library... yes | |
| checking for ngs-sdk package... | |
| includes... /bio/linuxbrew/Cellar/sratoolkit/2.5.0 | |
| libraries... /bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib64 | |
| checking for ngs-java package... | |
| jar... configure: optional ngs-java package not found: skipped. | |
| configure: creating 'build/Makefile.config.linux.x86_64' | |
| configure: creating 'build/Makefile.config.install.linux.x86_64.prl' | |
| configure: creating 'Makefile.config' | |
| configure: creating 'reconfigure' | |
| build type: release | |
| build prefix: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb | |
| build output path: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel | |
| includedir: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/include | |
| bindir: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/bin | |
| libdir: /bio/linuxbrew/Cellar/sratoolkit/2.5.0/lib | |
| CC = gcc -c | |
| CPP = g++ | |
| configured with: "'--with-ngs-sdk-prefix=/bio/linuxbrew/Cellar/sratoolkit/2.5.0' '--prefix=/bio/linuxbrew/Cellar/sratoolkit/2.5.0' '--build=/bio/linuxbrew/Cellar/sratoolkit/2.5.0'" |
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| 2015-05-31 12:19:58 +1000 | |
| make | |
| make[1]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext' | |
| make[3]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/zlib' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o adler32.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/adler32.c -D__mod_name__=libs/ext/zlib -D__file_name__=adler32 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o compress.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/compress.c -D__mod_name__=libs/ext/zlib -D__file_name__=compress -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o crc32.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/crc32.c -D__mod_name__=libs/ext/zlib -D__file_name__=crc32 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o deflate.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/deflate.c -D__mod_name__=libs/ext/zlib -D__file_name__=deflate -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o gzclose.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/gzclose.c -D__mod_name__=libs/ext/zlib -D__file_name__=gzclose -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o gzlib.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/gzlib.c -D__mod_name__=libs/ext/zlib -D__file_name__=gzlib -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o gzread.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/gzread.c -D__mod_name__=libs/ext/zlib -D__file_name__=gzread -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o gzwrite.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/gzwrite.c -D__mod_name__=libs/ext/zlib -D__file_name__=gzwrite -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o infback.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/infback.c -D__mod_name__=libs/ext/zlib -D__file_name__=infback -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o inffast.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/inffast.c -D__mod_name__=libs/ext/zlib -D__file_name__=inffast -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o inftrees.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/inftrees.c -D__mod_name__=libs/ext/zlib -D__file_name__=inftrees -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o inflate.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/inflate.c -D__mod_name__=libs/ext/zlib -D__file_name__=inflate -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trees.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/trees.c -D__mod_name__=libs/ext/zlib -D__file_name__=trees -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o uncompr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/uncompr.c -D__mod_name__=libs/ext/zlib -D__file_name__=uncompr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o zutil.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib/zutil.c -D__mod_name__=libs/ext/zlib -D__file_name__=zutil -D__file_ext__=c | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/zlib' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/zlib' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libz.a adler32.pic.o compress.pic.o crc32.pic.o deflate.pic.o gzclose.pic.o gzlib.pic.o gzread.pic.o gzwrite.pic.o infback.pic.o inffast.pic.o inflate.pic.o inftrees.pic.o trees.pic.o uncompr.pic.o zutil.pic.o | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/zlib' | |
| make[3]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/zlib' | |
| make[3]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/bzip2' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o blocksort.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/blocksort.c -D__mod_name__=libs/ext/bzip2 -D__file_name__=blocksort -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o huffman.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/huffman.c -D__mod_name__=libs/ext/bzip2 -D__file_name__=huffman -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o crctable.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/crctable.c -D__mod_name__=libs/ext/bzip2 -D__file_name__=crctable -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o randtable.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/randtable.c -D__mod_name__=libs/ext/bzip2 -D__file_name__=randtable -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o compress.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/compress.c -D__mod_name__=libs/ext/bzip2 -D__file_name__=compress -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o decompress.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/decompress.c -D__mod_name__=libs/ext/bzip2 -D__file_name__=decompress -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bzlib.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2/bzlib.c -D__mod_name__=libs/ext/bzip2 -D__file_name__=bzlib -D__file_ext__=c | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/bzip2' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/bzip2' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libbz2.a blocksort.pic.o huffman.pic.o crctable.pic.o randtable.pic.o compress.pic.o decompress.pic.o bzlib.pic.o | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/bzip2' | |
| make[3]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/bzip2' | |
| make[3]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/magic' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o magic.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/magic.c -D__mod_name__=libs/ext/magic -D__file_name__=magic -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o apprentice.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/apprentice.c -D__mod_name__=libs/ext/magic -D__file_name__=apprentice -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o softmagic.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/softmagic.c -D__mod_name__=libs/ext/magic -D__file_name__=softmagic -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o ascmagic.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/ascmagic.c -D__mod_name__=libs/ext/magic -D__file_name__=ascmagic -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o encoding.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/encoding.c -D__mod_name__=libs/ext/magic -D__file_name__=encoding -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o compress.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/compress.c -D__mod_name__=libs/ext/magic -D__file_name__=compress -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o is_tar.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/is_tar.c -D__mod_name__=libs/ext/magic -D__file_name__=is_tar -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o readelf.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/readelf.c -D__mod_name__=libs/ext/magic -D__file_name__=readelf -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o print.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/print.c -D__mod_name__=libs/ext/magic -D__file_name__=print -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o fsmagic.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/fsmagic.c -D__mod_name__=libs/ext/magic -D__file_name__=fsmagic -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o funcs.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/funcs.c -D__mod_name__=libs/ext/magic -D__file_name__=funcs -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o apptype.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/apptype.c -D__mod_name__=libs/ext/magic -D__file_name__=apptype -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o cdf.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/cdf.c -D__mod_name__=libs/ext/magic -D__file_name__=cdf -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o cdf_time.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/cdf_time.c -D__mod_name__=libs/ext/magic -D__file_name__=cdf_time -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o readcdf.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/readcdf.c -D__mod_name__=libs/ext/magic -D__file_name__=readcdf -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o strlcat.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/strlcat.c -D__mod_name__=libs/ext/magic -D__file_name__=strlcat -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -DHAVE_CONFIG_H -MD -o strlcpy.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/strlcpy.c -D__mod_name__=libs/ext/magic -D__file_name__=strlcpy -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/readelf.c: In function 'donote': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/readelf.c:91:13: warning: 'nh64.n_type' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| tmpval.ui = value; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/readelf.c:371:13: note: 'nh64.n_type' was declared here | |
| Elf64_Nhdr nh64; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/readelf.c:91:13: warning: 'nh32.n_type' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| tmpval.ui = value; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic/readelf.c:370:13: note: 'nh32.n_type' was declared here | |
| Elf32_Nhdr nh32; | |
| ^ | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/magic' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/magic' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libmagic-static.a magic.pic.o apprentice.pic.o softmagic.pic.o ascmagic.pic.o encoding.pic.o compress.pic.o is_tar.pic.o readelf.pic.o print.pic.o fsmagic.pic.o funcs.pic.o apptype.pic.o cdf.pic.o cdf_time.pic.o readcdf.pic.o strlcat.pic.o strlcpy.pic.o | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ext/magic' | |
| make[3]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext/magic' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ext' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfc' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o refcount.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/refcount.c -D__mod_name__=libs/kfc -D__file_name__=refcount -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysrsrc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix/sysrsrc.c -D__mod_name__=libs/kfc -D__file_name__=sysrsrc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tstate.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/tstate.c -D__mod_name__=libs/kfc -D__file_name__=tstate -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rsrc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/rsrc.c -D__mod_name__=libs/kfc -D__file_name__=rsrc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o vtbl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/vtbl.c -D__mod_name__=libs/kfc -D__file_name__=vtbl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysctx.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix/sysctx.c -D__mod_name__=libs/kfc -D__file_name__=sysctx -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o except.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/except.c -D__mod_name__=libs/kfc -D__file_name__=except -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o xc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc/xc.c -D__mod_name__=libs/kfc -D__file_name__=xc -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfc' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfc' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkfc.a refcount.pic.o tstate.pic.o sysrsrc.pic.o rsrc.pic.o vtbl.pic.o sysctx.pic.o except.pic.o xc.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfc' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfc' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib' | |
| make[3]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib/judy' | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyMalloc.n.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyMalloc.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudySL.n.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudySL.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyHS.n.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyHS.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyGet.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyGet.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyIns.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyIns.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyInsArray.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyInsArray.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyDel.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyDel.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyCascade.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyCascade.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyCount.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyCount.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyCreateBranch.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyCreateBranch.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyDecascade.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyDecascade.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyFirst.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyFirst.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyFreeArray.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyFreeArray.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyInsertBranch.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyInsertBranch.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyMallocIF.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyMallocIF.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyMemActive.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyMemActive.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyMemUsed.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyMemUsed.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyNext.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyNext.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyNextEmpty.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyNextEmpty.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyPrev.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyPrev.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyPrevEmpty.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyPrevEmpty.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyByCountWithDefs.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyByCountWithDefs.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o j__udyGet.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/j__udyGet.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyGet.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyGet.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyIns.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyIns.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o _JudyLTables.w.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDYL /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/_JudyLTables.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyInsArray.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyInsArray.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyDel.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyDel.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyCascade.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyCascade.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyCount.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyCount.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyCreateBranch.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyCreateBranch.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyDecascade.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyDecascade.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyFirst.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyFirst.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyFreeArray.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyFreeArray.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyInsertBranch.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyInsertBranch.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyMallocIF.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyMallocIF.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyMemUsed.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyMemUsed.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyMemActive.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyMemActive.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyNext.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyNext.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyNextEmpty.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyNextEmpty.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyPrev.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyPrev.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyPrevEmpty.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyPrevEmpty.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o JudyByCountWithDefs.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyByCountWithDefs.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o j__udyGet.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/j__udyGet.c | |
| gcc -c -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -MD -o _Judy1Tables.b.64.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -Wno-array-bounds -DNDEBUG -m64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/.. -DJUDY1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/_Judy1Tables.c | |
| In file included from /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyIns.c:29:0: | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyIns.c: In function 'j__udyInsWalk': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyIns.c:1504:51: warning: iteration 8u invokes undefined behavior [-Waggressive-loop-optimizations] | |
| JU_BITMAPSETL(Pjlb, Pjp->jp_1Index[offset]); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/Judy1.h:400:58: note: in definition of macro 'J1_JLB_BITMAP' | |
| #define J1_JLB_BITMAP(Pjlb,Subexp) ((Pjlb)->j1lb_Bitmap[Subexp]) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyPrivate.h:822:26: note: in expansion of macro 'JU_SUBEXPL' | |
| (JU_JLB_BITMAP(PJLB, JU_SUBEXPL(INDEX)) |= JU_BITPOSMASKL(INDEX)) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyIns.c:1504:17: note: in expansion of macro 'JU_BITMAPSETL' | |
| JU_BITMAPSETL(Pjlb, Pjp->jp_1Index[offset]); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy/JudyIns.c:1503:13: note: containing loop | |
| for (offset = 0; offset < 15; ++offset) | |
| ^ | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib/judy' | |
| make[3]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o text.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/text.c -D__mod_name__=libs/klib -D__file_name__=text -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o time.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/time.c -D__mod_name__=libs/klib -D__file_name__=time -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o utf8.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/utf8.c -D__mod_name__=libs/klib -D__file_name__=utf8 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o iso8859-1.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/iso8859-1.c -D__mod_name__=libs/klib -D__file_name__=iso8859-1 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o iso8859.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/iso8859.c -D__mod_name__=libs/klib -D__file_name__=iso8859 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cp1252.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/cp1252.c -D__mod_name__=libs/klib -D__file_name__=cp1252 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o token.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/token.c -D__mod_name__=libs/klib -D__file_name__=token -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o symtab.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/symtab.c -D__mod_name__=libs/klib -D__file_name__=symtab -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o container.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/container.c -D__mod_name__=libs/klib -D__file_name__=container -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o vector.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/vector.c -D__mod_name__=libs/klib -D__file_name__=vector -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o namelist.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/namelist.c -D__mod_name__=libs/klib -D__file_name__=namelist -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o vector_namelist.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/vector_namelist.c -D__mod_name__=libs/klib -D__file_name__=vector_namelist -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trie.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/trie.c -D__mod_name__=libs/klib -D__file_name__=trie -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pbstree.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/pbstree.c -D__mod_name__=libs/klib -D__file_name__=pbstree -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pbstree-impl.nopt.pic.o -fPIC -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/pbstree-impl.c -D__mod_name__=libs/klib -D__file_name__=pbstree-impl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pbstree-impl.swap.nopt.pic.o -fPIC -DSWAP_PERSISTED -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/pbstree-impl.c -D__mod_name__=libs/klib -D__file_name__=pbstree-impl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bstpersist.nopt.pic.o -fPIC -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/bstpersist.c -D__mod_name__=libs/klib -D__file_name__=bstpersist -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ptrie.nopt.pic.o -fPIC -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/ptrie.c -D__mod_name__=libs/klib -D__file_name__=ptrie -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ptpersist.nopt.pic.o -fPIC -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/ptpersist.c -D__mod_name__=libs/klib -D__file_name__=ptpersist -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o crc32.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/crc32.c -D__mod_name__=libs/klib -D__file_name__=crc32 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o md5.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/md5.c -D__mod_name__=libs/klib -D__file_name__=md5 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o misc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix/misc.c -D__mod_name__=libs/klib -D__file_name__=misc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o SHA-32bit.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/SHA-32bit.c -D__mod_name__=libs/klib -D__file_name__=SHA-32bit -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o SHA-64bit.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/SHA-64bit.c -D__mod_name__=libs/klib -D__file_name__=SHA-64bit -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o qsort.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/qsort.c -D__mod_name__=libs/klib -D__file_name__=qsort -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ksort.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/ksort.c -D__mod_name__=libs/klib -D__file_name__=ksort -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bsearch.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/bsearch.c -D__mod_name__=libs/klib -D__file_name__=bsearch -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pack.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/pack.c -D__mod_name__=libs/klib -D__file_name__=pack -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o unpack.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unpack.c -D__mod_name__=libs/klib -D__file_name__=unpack -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o vlen-encode.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/vlen-encode.c -D__mod_name__=libs/klib -D__file_name__=vlen-encode -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o data-buffer.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/data-buffer.c -D__mod_name__=libs/klib -D__file_name__=data-buffer -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o refcount.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/refcount.c -D__mod_name__=libs/klib -D__file_name__=refcount -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o printf.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/printf.c -D__mod_name__=libs/klib -D__file_name__=printf -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o status-rc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/status-rc.c -D__mod_name__=libs/klib -D__file_name__=status-rc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syserrcode.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux/syserrcode.c -D__mod_name__=libs/klib -D__file_name__=syserrcode -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o status-rc-strings.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/status-rc-strings.c -D__mod_name__=libs/klib -D__file_name__=status-rc-strings -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syswriter.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix/syswriter.c -D__mod_name__=libs/klib -D__file_name__=syswriter -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o out.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/out.c -D__mod_name__=libs/klib -D__file_name__=out -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o status.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/status.c -D__mod_name__=libs/klib -D__file_name__=status -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o log.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/log.c -D__mod_name__=libs/klib -D__file_name__=log -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o writer.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/writer.c -D__mod_name__=libs/klib -D__file_name__=writer -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syslog.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix/syslog.c -D__mod_name__=libs/klib -D__file_name__=syslog -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o systime.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix/systime.c -D__mod_name__=libs/klib -D__file_name__=systime -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rc-tbl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/rc-tbl.c -D__mod_name__=libs/klib -D__file_name__=rc-tbl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rc-idx-tbl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/rc-idx-tbl.c -D__mod_name__=libs/klib -D__file_name__=rc-idx-tbl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o judy-vector.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c -D__mod_name__=libs/klib -D__file_name__=judy-vector -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o report-klib.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/report-klib.c -D__mod_name__=libs/klib -D__file_name__=report-klib -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o num-gen.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/num-gen.c -D__mod_name__=libs/klib -D__file_name__=num-gen -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o progressbar.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/progressbar.c -D__mod_name__=libs/klib -D__file_name__=progressbar -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sra-release-version.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/sra-release-version.c -D__mod_name__=libs/klib -D__file_name__=sra-release-version -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/printf.c: In function 'string_flush_vprintf': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/printf.c:153:21: warning: variable 'trim_trailing_zeros' set but not used [-Wunused-but-set-variable] | |
| bool alternate, trim_trailing_zeros, date_time_zone; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/printf.c: In function 'parse_format_string': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/printf.c:1411:14: warning: variable 'has_width' set but not used [-Wunused-but-set-variable] | |
| bool has_width, has_precision; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/printf.c:1402:13: warning: variable 'str' set but not used [-Wunused-but-set-variable] | |
| String *str = * strp; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c: In function 'KVectorSet': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:1257:22: warning: switch condition has boolean value [-Wswitch-bool] | |
| switch ( * ( const bool* ) data ) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c: In function 'KVectorGet': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:273:54: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( uint16_t* ) buffer = ( uint16_t ) data; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:246:44: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( bool* ) buffer = data; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c: In function 'KVectorGetFirst': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:506:50: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( uint16_t* ) buffer = ( uint16_t ) data; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c: In function 'KVectorGetPrev': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:735:60: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( uint16_t* ) value_buffer = ( uint16_t ) data; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:708:50: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( bool* ) value_buffer = data; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c: In function 'KVectorGetNext': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:1006:60: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( uint16_t* ) value_buffer = ( uint16_t ) data; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:979:50: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( bool* ) value_buffer = data; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c: In function 'KVectorSet': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:1216:25: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * ( Word_t* ) datap = value; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy-vector.c:1233:16: note: 'value' was declared here | |
| Word_t value; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib' | |
| make[3]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy' | |
| make[4]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib/judy' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libjudy.a JudyMalloc.n.64.pic.o JudySL.n.64.pic.o JudyHS.n.64.pic.o JudyGet.w.64.pic.o JudyIns.w.64.pic.o JudyInsArray.w.64.pic.o JudyDel.w.64.pic.o JudyCascade.w.64.pic.o JudyCount.w.64.pic.o JudyCreateBranch.w.64.pic.o JudyDecascade.w.64.pic.o JudyFirst.w.64.pic.o JudyFreeArray.w.64.pic.o JudyInsertBranch.w.64.pic.o JudyMallocIF.w.64.pic.o JudyMemActive.w.64.pic.o JudyMemUsed.w.64.pic.o JudyNext.w.64.pic.o JudyNextEmpty.w.64.pic.o JudyPrev.w.64.pic.o JudyPrevEmpty.w.64.pic.o JudyByCountWithDefs.w.64.pic.o j__udyGet.w.64.pic.o _JudyLTables.w.64.pic.o JudyGet.b.64.pic.o JudyIns.b.64.pic.o JudyInsArray.b.64.pic.o JudyDel.b.64.pic.o JudyCascade.b.64.pic.o JudyCount.b.64.pic.o JudyCreateBranch.b.64.pic.o JudyDecascade.b.64.pic.o JudyFirst.b.64.pic.o JudyFreeArray.b.64.pic.o JudyInsertBranch.b.64.pic.o JudyMallocIF.b.64.pic.o JudyMemActive.b.64.pic.o JudyMemUsed.b.64.pic.o JudyNext.b.64.pic.o JudyNextEmpty.b.64.pic.o JudyPrev.b.64.pic.o JudyPrevEmpty.b.64.pic.o JudyByCountWithDefs.b.64.pic.o j__udyGet.b.64.pic.o _Judy1Tables.b.64.pic.o | |
| make[4]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib/judy' | |
| make[3]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib/judy' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libklib.a text.pic.o time.pic.o utf8.pic.o iso8859.pic.o iso8859-1.pic.o cp1252.pic.o token.pic.o symtab.pic.o container.pic.o vector.pic.o namelist.pic.o vector_namelist.pic.o trie.pic.o pbstree.pic.o pbstree-impl.nopt.pic.o pbstree-impl.swap.nopt.pic.o bstpersist.nopt.pic.o ptrie.nopt.pic.o ptpersist.nopt.pic.o crc32.pic.o md5.pic.o misc.pic.o SHA-32bit.pic.o SHA-64bit.pic.o qsort.pic.o ksort.pic.o bsearch.pic.o pack.pic.o unpack.pic.o vlen-encode.pic.o data-buffer.pic.o refcount.pic.o printf.pic.o status-rc-strings.pic.o status-rc.pic.o syserrcode.pic.o syswriter.pic.o out.pic.o status.pic.o log.pic.o writer.pic.o syslog.pic.o systime.pic.o rc-tbl.pic.o rc-idx-tbl.pic.o judy-vector.pic.o report-klib.pic.o num-gen.pic.o progressbar.pic.o sra-release-version.pic.o ld-tmp/judy-JudyMalloc.n.64.pic.o ld-tmp/judy-JudySL.n.64.pic.o ld-tmp/judy-JudyHS.n.64.pic.o ld-tmp/judy-JudyGet.w.64.pic.o ld-tmp/judy-JudyIns.w.64.pic.o ld-tmp/judy-JudyInsArray.w.64.pic.o ld-tmp/judy-JudyDel.w.64.pic.o ld-tmp/judy-JudyCascade.w.64.pic.o ld-tmp/judy-JudyCount.w.64.pic.o ld-tmp/judy-JudyCreateBranch.w.64.pic.o ld-tmp/judy-JudyDecascade.w.64.pic.o ld-tmp/judy-JudyFirst.w.64.pic.o ld-tmp/judy-JudyFreeArray.w.64.pic.o ld-tmp/judy-JudyInsertBranch.w.64.pic.o ld-tmp/judy-JudyMallocIF.w.64.pic.o ld-tmp/judy-JudyMemActive.w.64.pic.o ld-tmp/judy-JudyMemUsed.w.64.pic.o ld-tmp/judy-JudyNext.w.64.pic.o ld-tmp/judy-JudyNextEmpty.w.64.pic.o ld-tmp/judy-JudyPrev.w.64.pic.o ld-tmp/judy-JudyPrevEmpty.w.64.pic.o ld-tmp/judy-JudyByCountWithDefs.w.64.pic.o ld-tmp/judy-j__udyGet.w.64.pic.o ld-tmp/judy-_JudyLTables.w.64.pic.o ld-tmp/judy-JudyGet.b.64.pic.o ld-tmp/judy-JudyIns.b.64.pic.o ld-tmp/judy-JudyInsArray.b.64.pic.o ld-tmp/judy-JudyDel.b.64.pic.o ld-tmp/judy-JudyCascade.b.64.pic.o ld-tmp/judy-JudyCount.b.64.pic.o ld-tmp/judy-JudyCreateBranch.b.64.pic.o ld-tmp/judy-JudyDecascade.b.64.pic.o ld-tmp/judy-JudyFirst.b.64.pic.o ld-tmp/judy-JudyFreeArray.b.64.pic.o ld-tmp/judy-JudyInsertBranch.b.64.pic.o ld-tmp/judy-JudyMallocIF.b.64.pic.o ld-tmp/judy-JudyMemActive.b.64.pic.o ld-tmp/judy-JudyMemUsed.b.64.pic.o ld-tmp/judy-JudyNext.b.64.pic.o ld-tmp/judy-JudyNextEmpty.b.64.pic.o ld-tmp/judy-JudyPrev.b.64.pic.o ld-tmp/judy-JudyPrevEmpty.b.64.pic.o ld-tmp/judy-JudyByCountWithDefs.b.64.pic.o ld-tmp/judy-j__udyGet.b.64.pic.o ld-tmp/judy-_Judy1Tables.b.64.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/klib' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/klib' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kproc' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o task.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/task.c -D__mod_name__=libs/kproc -D__file_name__=task -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysmgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux/sysmgr.c -D__mod_name__=libs/kproc -D__file_name__=sysmgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o procmgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/procmgr.c -D__mod_name__=libs/kproc -D__file_name__=procmgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o systimeout.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix/systimeout.c -D__mod_name__=libs/kproc -D__file_name__=systimeout -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syslock.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux/syslock.c -D__mod_name__=libs/kproc -D__file_name__=syslock -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o systhread.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix/systhread.c -D__mod_name__=libs/kproc -D__file_name__=systhread -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syscond.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix/syscond.c -D__mod_name__=libs/kproc -D__file_name__=syscond -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sem.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/sem.c -D__mod_name__=libs/kproc -D__file_name__=sem -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sttimeout.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/sttimeout.c -D__mod_name__=libs/kproc -D__file_name__=sttimeout -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stlock.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/stlock.c -D__mod_name__=libs/kproc -D__file_name__=stlock -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stcond.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/stcond.c -D__mod_name__=libs/kproc -D__file_name__=stcond -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stsem.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/stsem.c -D__mod_name__=libs/kproc -D__file_name__=stsem -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stthread.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/stthread.c -D__mod_name__=libs/kproc -D__file_name__=stthread -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stbarrier.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/stbarrier.c -D__mod_name__=libs/kproc -D__file_name__=stbarrier -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o queue.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc/queue.c -D__mod_name__=libs/kproc -D__file_name__=queue -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kproc' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kproc' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libksproc.a task.pic.o sysmgr.pic.o procmgr.pic.o sttimeout.pic.o stlock.pic.o stcond.pic.o stsem.pic.o stthread.pic.o stbarrier.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkproc.a task.pic.o sysmgr.pic.o procmgr.pic.o systimeout.pic.o syslock.pic.o systhread.pic.o syscond.pic.o sem.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkq.a queue.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kproc' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kproc' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfs' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o mmap.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/mmap.c -D__mod_name__=libs/kfs -D__file_name__=mmap -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o directory.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/directory.c -D__mod_name__=libs/kfs -D__file_name__=directory -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o arrayfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/arrayfile.c -D__mod_name__=libs/kfs -D__file_name__=arrayfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o file.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/file.c -D__mod_name__=libs/kfs -D__file_name__=file -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysdir.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix/sysdir.c -D__mod_name__=libs/kfs -D__file_name__=sysdir -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix/sysfile.c -D__mod_name__=libs/kfs -D__file_name__=sysfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysmmap.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix/sysmmap.c -D__mod_name__=libs/kfs -D__file_name__=sysmmap -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syslockfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix/syslockfile.c -D__mod_name__=libs/kfs -D__file_name__=syslockfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysdll.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix/sysdll.c -D__mod_name__=libs/kfs -D__file_name__=sysdll -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o gzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/gzip.c -D__mod_name__=libs/kfs -D__file_name__=gzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/bzip.c -D__mod_name__=libs/kfs -D__file_name__=bzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o md5.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/md5.c -D__mod_name__=libs/kfs -D__file_name__=md5 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o crc32.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/crc32.c -D__mod_name__=libs/kfs -D__file_name__=crc32 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o arc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/arc.c -D__mod_name__=libs/kfs -D__file_name__=arc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o toc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/toc.c -D__mod_name__=libs/kfs -D__file_name__=toc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tocentry.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/tocentry.c -D__mod_name__=libs/kfs -D__file_name__=tocentry -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tocdir.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/tocdir.c -D__mod_name__=libs/kfs -D__file_name__=tocdir -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tocfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/tocfile.c -D__mod_name__=libs/kfs -D__file_name__=tocfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sra.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/sra.c -D__mod_name__=libs/kfs -D__file_name__=sra -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tar.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/tar.c -D__mod_name__=libs/kfs -D__file_name__=tar -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o teefile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/teefile.c -D__mod_name__=libs/kfs -D__file_name__=teefile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o buffile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/buffile.c -D__mod_name__=libs/kfs -D__file_name__=buffile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o buffile-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/buffile-read.c -D__mod_name__=libs/kfs -D__file_name__=buffile-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o buffile-write.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/buffile-write.c -D__mod_name__=libs/kfs -D__file_name__=buffile-write -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o subfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/subfile.c -D__mod_name__=libs/kfs -D__file_name__=subfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o nullfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/nullfile.c -D__mod_name__=libs/kfs -D__file_name__=nullfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o countfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/countfile.c -D__mod_name__=libs/kfs -D__file_name__=countfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dir_test.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/dir_test.c -D__mod_name__=libs/kfs -D__file_name__=dir_test -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pagefile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/pagefile.c -D__mod_name__=libs/kfs -D__file_name__=pagefile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pmem.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/pmem.c -D__mod_name__=libs/kfs -D__file_name__=pmem -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o readheadfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/readheadfile.c -D__mod_name__=libs/kfs -D__file_name__=readheadfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ramfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/ramfile.c -D__mod_name__=libs/kfs -D__file_name__=ramfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o extendable-ramfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/extendable-ramfile.c -D__mod_name__=libs/kfs -D__file_name__=extendable-ramfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o quickmount.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/quickmount.c -D__mod_name__=libs/kfs -D__file_name__=quickmount -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o report.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/report.c -D__mod_name__=libs/kfs -D__file_name__=report -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o lockfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/lockfile.c -D__mod_name__=libs/kfs -D__file_name__=lockfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cacheteefile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/cacheteefile.c -D__mod_name__=libs/kfs -D__file_name__=cacheteefile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o from_to_namelist.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/from_to_namelist.c -D__mod_name__=libs/kfs -D__file_name__=from_to_namelist -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o mmap.nommap.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -DFORCE_MALLOC_MMAP -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/mmap.c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/pagefile.c: In function 'KPageFile_whack_recursive': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/pagefile.c:661:9: warning: variable 'rc' set but not used [-Wunused-but-set-variable] | |
| rc_t rc; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/bzip.c: In function 'KBZipFileWriteInt': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/bzip.c:112:13: warning: variable 'zret' set but not used [-Wunused-but-set-variable] | |
| int zret; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/gzip.c: In function 'KGZipFile_OutDestroy': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/gzip.c:484:13: warning: variable 'ret' set but not used [-Wunused-but-set-variable] | |
| int ret; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/gzip.c: In function 'KGZipFile_OutWrite': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/gzip.c:513:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] | |
| int ret; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/unix/sysdll.c:462:6: warning: 'KDylibSetLogging' defined but not used [-Wunused-function] | |
| rc_t KDylibSetLogging ( const KDylib *self ) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/arc.c: In function 'KArcDirResolvePath': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs/arc.c:2378:12: warning: 'full' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| char * full; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfs' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfs' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkfs.a mmap.pic.o directory.pic.o arrayfile.pic.o file.pic.o sysdir.pic.o sysfile.pic.o sysmmap.pic.o syslockfile.pic.o sysdll.pic.o gzip.pic.o bzip.pic.o md5.pic.o crc32.pic.o arc.pic.o toc.pic.o tocentry.pic.o tocdir.pic.o tocfile.pic.o sra.pic.o tar.pic.o teefile.pic.o buffile.pic.o buffile-read.pic.o buffile-write.pic.o subfile.pic.o nullfile.pic.o countfile.pic.o dir_test.pic.o pagefile.pic.o pmem.pic.o readheadfile.pic.o ramfile.pic.o extendable-ramfile.pic.o quickmount.pic.o report.pic.o lockfile.pic.o cacheteefile.pic.o from_to_namelist.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkfs-nommap.a mmap.nommap.pic.o directory.pic.o arrayfile.pic.o file.pic.o sysdir.pic.o sysfile.pic.o sysmmap.pic.o syslockfile.pic.o sysdll.pic.o gzip.pic.o bzip.pic.o md5.pic.o crc32.pic.o arc.pic.o toc.pic.o tocentry.pic.o tocdir.pic.o tocfile.pic.o sra.pic.o tar.pic.o teefile.pic.o buffile.pic.o buffile-read.pic.o buffile-write.pic.o subfile.pic.o nullfile.pic.o countfile.pic.o dir_test.pic.o pagefile.pic.o pmem.pic.o readheadfile.pic.o ramfile.pic.o extendable-ramfile.pic.o quickmount.pic.o report.pic.o lockfile.pic.o cacheteefile.pic.o from_to_namelist.pic.o | |
| NOTE - internal library libkff cannot be built: It requires 'libmagic' and its development headers. | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfs' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfs' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kns' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o kns_manager-ext.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/kns_manager-ext.c -D__mod_name__=libs/kns -D__file_name__=kns_manager-ext -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o manager.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/manager.c -D__mod_name__=libs/kns -D__file_name__=manager -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stream.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/stream.c -D__mod_name__=libs/kns -D__file_name__=stream -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stream-from-files.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/stream-from-files.c -D__mod_name__=libs/kns -D__file_name__=stream-from-files -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stream-from-streams.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/stream-from-streams.c -D__mod_name__=libs/kns -D__file_name__=stream-from-streams -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o endpoint.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/endpoint.c -D__mod_name__=libs/kns -D__file_name__=endpoint -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syssock.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix/syssock.c -D__mod_name__=libs/kns -D__file_name__=syssock -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysendpoint.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux/sysendpoint.c -D__mod_name__=libs/kns -D__file_name__=sysendpoint -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysstream.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix/sysstream.c -D__mod_name__=libs/kns -D__file_name__=sysstream -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysmgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix/sysmgr.c -D__mod_name__=libs/kns -D__file_name__=sysmgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syspoll.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux/syspoll.c -D__mod_name__=libs/kns -D__file_name__=syspoll -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o http-file.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/http-file.c -D__mod_name__=libs/kns -D__file_name__=http-file -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o http-client.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/http-client.c -D__mod_name__=libs/kns -D__file_name__=http-client -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o http-retrier.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/http-retrier.c -D__mod_name__=libs/kns -D__file_name__=http-retrier -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o http.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns/http.c -D__mod_name__=libs/kns -D__file_name__=http -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kns' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kns' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkns.a kns_manager-ext.pic.o manager.pic.o stream.pic.o stream-from-files.pic.o stream-from-streams.pic.o endpoint.pic.o sysendpoint.pic.o syssock.pic.o sysstream.pic.o sysmgr.pic.o syspoll.pic.o http-file.pic.o http-client.pic.o http-retrier.pic.o http.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kns' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kns' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfg' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o config-lex.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config-lex.c -D__mod_name__=libs/kfg -D__file_name__=config-lex -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o config-grammar.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config-grammar.c -D__mod_name__=libs/kfg -D__file_name__=config-grammar -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o config.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config.c -D__mod_name__=libs/kfg -D__file_name__=config -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o config-aws.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config-aws.c -D__mod_name__=libs/kfg -D__file_name__=config-aws -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o kart.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/kart.c -D__mod_name__=libs/kfg -D__file_name__=kart -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o repository.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/repository.c -D__mod_name__=libs/kfg -D__file_name__=repository -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ngc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/ngc.c -D__mod_name__=libs/kfg -D__file_name__=ngc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o properties.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/properties.c -D__mod_name__=libs/kfg -D__file_name__=properties -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o report-kfg.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/report-kfg.c -D__mod_name__=libs/kfg -D__file_name__=report-kfg -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o keystore.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/keystore.c -D__mod_name__=libs/kfg -D__file_name__=keystore -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config.c: In function 'KConfigFill': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config.c:2634:9: warning: implicit declaration of function 'add_aws_nodes' [-Wimplicit-function-declaration] | |
| add_aws_nodes ( self ); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config-lex.c:1567:17: warning: 'yyunput' defined but not used [-Wunused-function] | |
| static void yyunput (int c, register char * yy_bp , yyscan_t yyscanner) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config-lex.c:1613:16: warning: 'input' defined but not used [-Wunused-function] | |
| static int input (yyscan_t yyscanner) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/config-lex.c:2083:16: warning: 'yy_top_state' defined but not used [-Wunused-function] | |
| static int yy_top_state (yyscan_t yyscanner) | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfg' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfg' | |
| cp /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/default.kfg /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/lib/ncbi/default.kfg | |
| cp /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/default.kfg /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/bin/ncbi/default.kfg | |
| mkdir -p /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/test-bin/ncbi | |
| cp /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg/default.kfg /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/test-bin/ncbi/default.kfg | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkfg.a config-lex.pic.o config-grammar.pic.o config.pic.o config-aws.pic.o kart.pic.o repository.pic.o properties.pic.o ngc.pic.o report-kfg.pic.o keystore.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kfg' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kfg' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/krypto' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ciphermgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/ciphermgr.c -D__mod_name__=libs/krypto -D__file_name__=ciphermgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wgaencrypt.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/wgaencrypt.c -D__mod_name__=libs/krypto -D__file_name__=wgaencrypt -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o encfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfile.c -D__mod_name__=libs/krypto -D__file_name__=encfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o encfilev2.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfilev2.c -D__mod_name__=libs/krypto -D__file_name__=encfilev2 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher.c -D__mod_name__=libs/krypto -D__file_name__=cipher -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o aes_core.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes_core.c -D__mod_name__=libs/krypto -D__file_name__=aes_core -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o aes-byte.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-byte.c -D__mod_name__=libs/krypto -D__file_name__=aes-byte -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o key.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/key.c -D__mod_name__=libs/krypto -D__file_name__=key -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reencfile.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/reencfile.c -D__mod_name__=libs/krypto -D__file_name__=reencfile -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher-byte.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-byte.c -D__mod_name__=libs/krypto -D__file_name__=cipher-byte -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher-no-vec.vec.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-no-vec.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher-no-vec.vecreg.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-no-vec.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher-no-vec.aes-ni.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG -DUSEAESNI /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-no-vec.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o no-null-ncbi.vec.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/no-null-ncbi.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o no-null-ncbi.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/no-null-ncbi.c -D__mod_name__=libs/krypto -D__file_name__=no-null-ncbi -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o no-null-ncbi.vecreg.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/no-null-ncbi.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o no-null-ncbi.aes-ni.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG -DUSEAESNI /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/no-null-ncbi.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o testcipher.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/testcipher.c -D__mod_name__=libs/krypto -D__file_name__=testcipher -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/ciphermgr.c: In function 'KCipherManagerDestroy': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/ciphermgr.c:124:30: warning: variable 'reread' set but not used [-Wunused-but-set-variable] | |
| KCipherManager * reread; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfilev2.c: In function 'KEncFileRead': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfilev2.c:1610:13: warning: switch condition has boolean value [-Wswitch-bool] | |
| switch (self->size_known) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfilev2.c: At top level: | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfilev2.c:473:6: warning: 'KEncFileFooterRead' defined but not used [-Wunused-function] | |
| rc_t KEncFileFooterRead (KEncFile * self, const uint64_t pos, | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfile.c: In function 'KEncFileV1BufferRead': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfile.c:237:15: warning: variable 'bbuffer' set but not used [-Wunused-but-set-variable] | |
| uint8_t * bbuffer; /* void pointer made to a byyte pointer */ | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfile.c: At top level: | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/encfile.c:1509:9: warning: 'KEncFileV1Update' defined but not used [-Wunused-function] | |
| rc_t CC KEncFileV1Update (KEncFileV1 *self, uint64_t pos, | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/reencfile.c: In function 'KReencFileReadHandleFooter': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/reencfile.c:561:12: warning: variable 'offset' set but not used [-Wunused-but-set-variable] | |
| size_t offset; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/krypto' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/krypto' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher-vec.vec.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -Wa,-ahlms=/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-vec.vec.pic.o.list /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-vec.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o aes-ncbi.vec.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -Wa,-ahlms=/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.vec.pic.o.list /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher-vec.vecreg.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG -funsafe-math-optimizations -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -Wa,-march=generic64+sse4 -Wa,-ahlms=/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-vec.vecreg.pic.o.list /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-vec.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o aes-ncbi.vecreg.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG -funsafe-math-optimizations -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -Wa,-march=generic64+sse4 -Wa,-ahlms=/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.vecreg.pic.o.list /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c: In function 'KAESBlockCipherVecRegMake': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c:2510:34: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| uint32_t level = 1, a, b, c, d; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c:2557:20: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| else if ( ! (c & bit_SSE3)) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c:2510:31: note: 'c' was declared here | |
| uint32_t level = 1, a, b, c, d; | |
| ^ | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cipher-vec.aes-ni.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG -DUSEAESNI -funsafe-math-optimizations -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -maes -Wa,-march=generic64+aes -Wa,-ahlms=/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-vec.aes-ni.pic.o.list /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/cipher-vec.c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o aes-ncbi.aes-ni.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY -DUSEVEC -DUSEVECREG -DUSEAESNI -funsafe-math-optimizations -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -maes -Wa,-march=generic64+aes -Wa,-ahlms=/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.aes-ni.pic.o.list /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c: In function 'KAESBlockCipherVecAesNiMake': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c:2510:34: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| uint32_t level = 1, a, b, c, d; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto/aes-ncbi.c:2510:31: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| uint32_t level = 1, a, b, c, d; | |
| ^ | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkrypto.a ciphermgr.pic.o wgaencrypt.pic.o encfile.pic.o encfilev2.pic.o cipher.pic.o aes_core.pic.o aes-byte.pic.o cipher-byte.pic.o key.pic.o reencfile.pic.o cipher-vec.vec.pic.o aes-ncbi.vec.pic.o cipher-vec.vecreg.pic.o aes-ncbi.vecreg.pic.o cipher-vec.aes-ni.pic.o aes-ncbi.aes-ni.pic.o no-null-ncbi.pic.o no-null-ncbi.vec.pic.o no-null-ncbi.vecreg.pic.o no-null-ncbi.aes-ni.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkryptotest.a testcipher.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/krypto' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/krypto' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vfs' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o path.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c -D__mod_name__=libs/vfs -D__file_name__=path -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o syspath.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/unix/syspath.c -D__mod_name__=libs/vfs -D__file_name__=syspath -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o manager.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/manager.c -D__mod_name__=libs/vfs -D__file_name__=manager -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o resolver.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/resolver.c -D__mod_name__=libs/vfs -D__file_name__=resolver -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c: In function 'VPathParseInt': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c:1328:17: warning: 'oid_anchor' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| VPathCaptureOid ( self, oid, uri, anchor, oid_anchor, i ); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c:401:26: warning: 'oid' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| self -> obj_id = ( uint32_t ) oid; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c:538:14: note: 'oid' was declared here | |
| uint64_t oid; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c:1654:33: warning: 'ip' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| ipv6 [ ip ] = toupper ( ch ) - 'A' + 10; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c:486:23: warning: 'port' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| self -> portnum = ( uint16_t ) port; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs/path.c:520:14: note: 'port' was declared here | |
| uint32_t port; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vfs' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vfs' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libvfs.a path.pic.o syspath.pic.o manager.pic.o resolver.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vfs' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vfs' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kapp' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o main.o -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/main.c -D__mod_name__=libs/kapp -D__file_name__=main -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o args.o -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/args.c -D__mod_name__=libs/kapp -D__file_name__=args -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tokenizer.o -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/tokenizer.c -D__mod_name__=libs/kapp -D__file_name__=tokenizer -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sysmain.o -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix/sysmain.c -D__mod_name__=libs/kapp -D__file_name__=sysmain -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o main-norsrc.o -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -DNO_KRSRC=1 /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/main.c -D__mod_name__=libs/kapp -D__file_name__= -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o progressbar.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/progressbar.c -D__mod_name__=libs/kapp -D__file_name__=progressbar -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o loader-file.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/loader-file.c -D__mod_name__=libs/kapp -D__file_name__=loader-file -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o loader-meta.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/loader-meta.c -D__mod_name__=libs/kapp -D__file_name__=loader-meta -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o log-xml.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/log-xml.c -D__mod_name__=libs/kapp -D__file_name__=log-xml -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o queue-file.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/queue-file.c -D__mod_name__=libs/kapp -D__file_name__=queue-file -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/args.c: In function 'OptionMake': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/args.c:183:13: warning: 'memset' used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] | |
| memset (&self->values, sizeof(self->values), 0); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp/unix/sysmain.c:132:6: warning: 'SigHupHandler' defined but not used [-Wunused-function] | |
| void SigHupHandler ( int sig ) | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kapp' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kapp' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkapp.a main.o args.o tokenizer.o sysmain.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkapp-norsrc.a main-norsrc.o args.o tokenizer.o sysmain.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libload.a progressbar.pic.o loader-file.pic.o loader-meta.pic.o log-xml.pic.o queue-file.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kapp' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kapp' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kdb' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dbmgr-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/dbmgr-cmn.c -D__mod_name__=libs/kdb -D__file_name__=dbmgr-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o kdb.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/kdb.c -D__mod_name__=libs/kdb -D__file_name__=kdb -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o btree.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c -D__mod_name__=libs/kdb -D__file_name__=btree -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dbmgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/dbmgr.c -D__mod_name__=libs/kdb -D__file_name__=dbmgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dbcc-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/dbcc-cmn.c -D__mod_name__=libs/kdb -D__file_name__=dbcc-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o database.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/database.c -D__mod_name__=libs/kdb -D__file_name__=database -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o database-cc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/database-cc.c -D__mod_name__=libs/kdb -D__file_name__=database-cc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o table.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/table.c -D__mod_name__=libs/kdb -D__file_name__=table -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o table-cc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/table-cc.c -D__mod_name__=libs/kdb -D__file_name__=table-cc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o column.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/column.c -D__mod_name__=libs/kdb -D__file_name__=column -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o coldata.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/coldata.c -D__mod_name__=libs/kdb -D__file_name__=coldata -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o column-cc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/column-cc.c -D__mod_name__=libs/kdb -D__file_name__=column-cc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o colidx.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/colidx.c -D__mod_name__=libs/kdb -D__file_name__=colidx -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o colidx0.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/colidx0.c -D__mod_name__=libs/kdb -D__file_name__=colidx0 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o colidx1.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/colidx1.c -D__mod_name__=libs/kdb -D__file_name__=colidx1 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o colidx2.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/colidx2.c -D__mod_name__=libs/kdb -D__file_name__=colidx2 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o idxblk.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/idxblk.c -D__mod_name__=libs/kdb -D__file_name__=idxblk -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o meta.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/meta.c -D__mod_name__=libs/kdb -D__file_name__=meta -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o index.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/index.c -D__mod_name__=libs/kdb -D__file_name__=index -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o idstats.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/idstats.c -D__mod_name__=libs/kdb -D__file_name__=idstats -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trieidx-v1.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/trieidx-v1.c -D__mod_name__=libs/kdb -D__file_name__=trieidx-v1 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trieval-v1.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/trieval-v1.c -D__mod_name__=libs/kdb -D__file_name__=trieval-v1 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ptrieval-v1.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/ptrieval-v1.c -D__mod_name__=libs/kdb -D__file_name__=ptrieval-v1 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trieidx-v2.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/trieidx-v2.c -D__mod_name__=libs/kdb -D__file_name__=trieidx-v2 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trieval-v2.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/trieval-v2.c -D__mod_name__=libs/kdb -D__file_name__=trieval-v2 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ptrieval-v2.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/ptrieval-v2.c -D__mod_name__=libs/kdb -D__file_name__=ptrieval-v2 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o u64idx-v3.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/u64idx-v3.c -D__mod_name__=libs/kdb -D__file_name__=u64idx-v3 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wdbmgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wdbmgr.c -D__mod_name__=libs/kdb -D__file_name__=wdbmgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wkdb.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wkdb.c -D__mod_name__=libs/kdb -D__file_name__=wkdb -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wdatabase.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wdatabase.c -D__mod_name__=libs/kdb -D__file_name__=wdatabase -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcolumn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wcolumn.c -D__mod_name__=libs/kdb -D__file_name__=wcolumn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wtable.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wtable.c -D__mod_name__=libs/kdb -D__file_name__=wtable -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcolidx.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wcolidx.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcoldata.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wcoldata.c -D__mod_name__=libs/kdb -D__file_name__=wcoldata -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcolidx0.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wcolidx0.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx0 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcolidx1.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wcolidx1.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx1 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcolidx2.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wcolidx2.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx2 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o widxblk.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/widxblk.c -D__mod_name__=libs/kdb -D__file_name__=widxblk -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wmeta.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wmeta.c -D__mod_name__=libs/kdb -D__file_name__=wmeta -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o windex.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/windex.c -D__mod_name__=libs/kdb -D__file_name__=windex -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wtrieidx-v1.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wtrieidx-v1.c -D__mod_name__=libs/kdb -D__file_name__=wtrieidx-v1 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wtrieidx-v2.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wtrieidx-v2.c -D__mod_name__=libs/kdb -D__file_name__=wtrieidx-v2 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wu64idx-v3.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/wu64idx-v3.c -D__mod_name__=libs/kdb -D__file_name__=wu64idx-v3 -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c: In function 'leaf_entry': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c:2022:22: warning: unused variable 'key_prefix_len' [-Wunused-variable] | |
| const size_t key_prefix_len=cnode->key_prefix_len; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c: In function 'branch_insert': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c:2184:14: warning: unused variable 'page' [-Wunused-variable] | |
| uint8_t *page = (uint8_t*) node; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c: In function 'branch_entry': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c:2591:22: warning: unused variable 'key_prefix_len' [-Wunused-variable] | |
| const size_t key_prefix_len=cnode->key_prefix_len; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/colidx2.c:153:6: warning: 'KColIdxBlockLocateBlob' defined but not used [-Wunused-function] | |
| rc_t KColIdxBlockLocateBlob ( const KColIdxBlock *iblk, | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c: In function 'KBTreeMakeUpdate': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb/btree.c:1172:28: warning: 'rc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| if ( rc == 0 && bt -> hdr . type [ 0 ] != type ) | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kdb' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kdb' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkdb.a btree.pic.o dbmgr-cmn.pic.o kdb.pic.o dbmgr.pic.o dbcc-cmn.pic.o database.pic.o database-cc.pic.o table.pic.o table-cc.pic.o column.pic.o column-cc.pic.o coldata.pic.o colidx.pic.o colidx0.pic.o colidx1.pic.o colidx2.pic.o idxblk.pic.o meta.pic.o index.pic.o idstats.pic.o trieidx-v1.pic.o trieval-v1.pic.o ptrieval-v1.pic.o trieidx-v2.pic.o trieval-v2.pic.o ptrieval-v2.pic.o u64idx-v3.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwkdb.a btree.pic.o dbmgr-cmn.pic.o wkdb.pic.o wdbmgr.pic.o wdatabase.pic.o wtable.pic.o wcolumn.pic.o wcoldata.pic.o wcolidx.pic.o wcolidx0.pic.o wcolidx1.pic.o wcolidx2.pic.o idxblk.pic.o widxblk.pic.o wmeta.pic.o windex.pic.o wtrieidx-v1.pic.o wtrieidx-v2.pic.o wu64idx-v3.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kdb' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kdb' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vdb' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dbmgr-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/dbmgr-cmn.c -D__mod_name__=libs/vdb -D__file_name__=dbmgr-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-tok.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-tok.c -D__mod_name__=libs/vdb -D__file_name__=schema-tok -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-parse.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-parse.c -D__mod_name__=libs/vdb -D__file_name__=schema-parse -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-type.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-type.c -D__mod_name__=libs/vdb -D__file_name__=schema-type -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-prod.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-prod.c -D__mod_name__=libs/vdb -D__file_name__=schema-prod -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-func.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-func.c -D__mod_name__=libs/vdb -D__file_name__=schema-func -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-expr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-expr.c -D__mod_name__=libs/vdb -D__file_name__=schema-expr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-eval.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-eval.c -D__mod_name__=libs/vdb -D__file_name__=schema-eval -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-tbl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-tbl.c -D__mod_name__=libs/vdb -D__file_name__=schema-tbl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-db.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-db.c -D__mod_name__=libs/vdb -D__file_name__=schema-db -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-int.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-int.c -D__mod_name__=libs/vdb -D__file_name__=schema-int -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema-dump.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-dump.c -D__mod_name__=libs/vdb -D__file_name__=schema-dump -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o schema.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema.c -D__mod_name__=libs/vdb -D__file_name__=schema -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o linker-int.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linker-int.c -D__mod_name__=libs/vdb -D__file_name__=linker-int -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o linker-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linker-cmn.c -D__mod_name__=libs/vdb -D__file_name__=linker-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o database-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/database-cmn.c -D__mod_name__=libs/vdb -D__file_name__=database-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o database-depend.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/database-depend.c -D__mod_name__=libs/vdb -D__file_name__=database-depend -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o database-load.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/database-load.c -D__mod_name__=libs/vdb -D__file_name__=database-load -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o table-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/table-cmn.c -D__mod_name__=libs/vdb -D__file_name__=table-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o table-load.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/table-load.c -D__mod_name__=libs/vdb -D__file_name__=table-load -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cursor-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/cursor-cmn.c -D__mod_name__=libs/vdb -D__file_name__=cursor-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o column-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/column-cmn.c -D__mod_name__=libs/vdb -D__file_name__=column-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o prod-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/prod-cmn.c -D__mod_name__=libs/vdb -D__file_name__=prod-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o prod-expr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/prod-expr.c -D__mod_name__=libs/vdb -D__file_name__=prod-expr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o prod-func.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/prod-func.c -D__mod_name__=libs/vdb -D__file_name__=prod-func -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o phys-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/phys-cmn.c -D__mod_name__=libs/vdb -D__file_name__=phys-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o blob.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/blob.c -D__mod_name__=libs/vdb -D__file_name__=blob -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o phys-load.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/phys-load.c -D__mod_name__=libs/vdb -D__file_name__=phys-load -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o blob-headers.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/blob-headers.c -D__mod_name__=libs/vdb -D__file_name__=blob-headers -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o page-map.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/page-map.c -D__mod_name__=libs/vdb -D__file_name__=page-map -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o row-id.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/row-id.c -D__mod_name__=libs/vdb -D__file_name__=row-id -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o row-len.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/row-len.c -D__mod_name__=libs/vdb -D__file_name__=row-len -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o fixed-row-len.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/fixed-row-len.c -D__mod_name__=libs/vdb -D__file_name__=fixed-row-len -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o merge.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/merge.c -D__mod_name__=libs/vdb -D__file_name__=merge -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o split.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/split.c -D__mod_name__=libs/vdb -D__file_name__=split -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o compare.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/compare.c -D__mod_name__=libs/vdb -D__file_name__=compare -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o meta-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/meta-read.c -D__mod_name__=libs/vdb -D__file_name__=meta-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o meta-value.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/meta-value.c -D__mod_name__=libs/vdb -D__file_name__=meta-value -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o meta-attr-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/meta-attr-read.c -D__mod_name__=libs/vdb -D__file_name__=meta-attr-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cast.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/cast.c -D__mod_name__=libs/vdb -D__file_name__=cast -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o range-validate.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/range-validate.c -D__mod_name__=libs/vdb -D__file_name__=range-validate -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o parameter-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/parameter-read.c -D__mod_name__=libs/vdb -D__file_name__=parameter-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o redimension.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/redimension.c -D__mod_name__=libs/vdb -D__file_name__=redimension -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o index_project.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/index_project.c -D__mod_name__=libs/vdb -D__file_name__=index_project -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o index_lookup.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/index_lookup.c -D__mod_name__=libs/vdb -D__file_name__=index_lookup -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o transpose.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/transpose.c -D__mod_name__=libs/vdb -D__file_name__=transpose -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o delta_average.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/delta_average.c -D__mod_name__=libs/vdb -D__file_name__=delta_average -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o report-vdb.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/report-vdb.c -D__mod_name__=libs/vdb -D__file_name__=report-vdb -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dbmgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/dbmgr.c -D__mod_name__=libs/vdb -D__file_name__=dbmgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o linker.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linker.c -D__mod_name__=libs/vdb -D__file_name__=linker -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o database.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/database.c -D__mod_name__=libs/vdb -D__file_name__=database -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o table.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/table.c -D__mod_name__=libs/vdb -D__file_name__=table -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cursor.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/cursor.c -D__mod_name__=libs/vdb -D__file_name__=cursor -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o column.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/column.c -D__mod_name__=libs/vdb -D__file_name__=column -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o prod.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/prod.c -D__mod_name__=libs/vdb -D__file_name__=prod -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o phys.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/phys.c -D__mod_name__=libs/vdb -D__file_name__=phys -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wdbmgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wdbmgr.c -D__mod_name__=libs/vdb -D__file_name__=wdbmgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wlinker.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wlinker.c -D__mod_name__=libs/vdb -D__file_name__=wlinker -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wdatabase.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wdatabase.c -D__mod_name__=libs/vdb -D__file_name__=wdatabase -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wtable.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wtable.c -D__mod_name__=libs/vdb -D__file_name__=wtable -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcursor.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wcursor.c -D__mod_name__=libs/vdb -D__file_name__=wcursor -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wcolumn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wcolumn.c -D__mod_name__=libs/vdb -D__file_name__=wcolumn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wprod.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wprod.c -D__mod_name__=libs/vdb -D__file_name__=wprod -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wphys.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/wphys.c -D__mod_name__=libs/vdb -D__file_name__=wphys -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o meta-write.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/meta-write.c -D__mod_name__=libs/vdb -D__file_name__=meta-write -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o meta-attr-write.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/meta-attr-write.c -D__mod_name__=libs/vdb -D__file_name__=meta-attr-write -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o meta-append.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/meta-append.c -D__mod_name__=libs/vdb -D__file_name__=meta-append -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o index_insert.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/index_insert.c -D__mod_name__=libs/vdb -D__file_name__=index_insert -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-eval.c: In function 'VSchemaCacheIntrinsicTypeId': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-eval.c:72:18: warning: variable 'prev' set but not used [-Wunused-but-set-variable] | |
| uint32_t prev; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/phys-cmn.c: In function 'VPhysicalFinishKColumn': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/phys-cmn.c:142:14: warning: unused variable 'count' [-Wunused-variable] | |
| uint64_t count; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-func.c: In function 'SFunctionRestSchemaParms': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-func.c:593:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] | |
| rc_t rc; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-func.c: In function 'SFunctionRestFactParms': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/schema-func.c:639:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] | |
| rc_t rc; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/cursor-cmn.c: In function 'VCursorParamsLookupOrCreate': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/cursor-cmn.c:2389:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] | |
| rc_t rc; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/prod-cmn.c: In function 'VFunctionProdReadNormal': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/prod-cmn.c:189:39: warning: array subscript is above array bounds [-Warray-bounds] | |
| vblob_release ( self -> cache [ i ], NULL ); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb/prod-cmn.c:190:23: warning: array subscript is above array bounds [-Warray-bounds] | |
| self -> cache [ i ] = NULL; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vdb' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vdb' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libvdb.a dbmgr-cmn.pic.o schema-tok.pic.o schema-parse.pic.o schema-type.pic.o schema-func.pic.o schema-prod.pic.o schema-expr.pic.o schema-eval.pic.o schema-tbl.pic.o schema-db.pic.o schema-dump.pic.o schema-int.pic.o schema.pic.o linker-int.pic.o linker-cmn.pic.o database-cmn.pic.o database-depend.pic.o database-load.pic.o table-cmn.pic.o table-load.pic.o cursor-cmn.pic.o column-cmn.pic.o prod-cmn.pic.o prod-expr.pic.o prod-func.pic.o phys-cmn.pic.o phys-load.pic.o blob.pic.o blob-headers.pic.o page-map.pic.o row-id.pic.o row-len.pic.o fixed-row-len.pic.o merge.pic.o split.pic.o compare.pic.o meta-read.pic.o meta-value.pic.o meta-attr-read.pic.o cast.pic.o range-validate.pic.o parameter-read.pic.o redimension.pic.o index_project.pic.o index_lookup.pic.o transpose.pic.o delta_average.pic.o report-vdb.pic.o dbmgr.pic.o linker.pic.o database.pic.o table.pic.o cursor.pic.o column.pic.o prod.pic.o phys.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwvdb.a dbmgr-cmn.pic.o schema-tok.pic.o schema-parse.pic.o schema-type.pic.o schema-func.pic.o schema-prod.pic.o schema-expr.pic.o schema-eval.pic.o schema-tbl.pic.o schema-db.pic.o schema-dump.pic.o schema-int.pic.o schema.pic.o linker-int.pic.o linker-cmn.pic.o database-cmn.pic.o database-depend.pic.o database-load.pic.o table-cmn.pic.o table-load.pic.o cursor-cmn.pic.o column-cmn.pic.o prod-cmn.pic.o prod-expr.pic.o prod-func.pic.o phys-cmn.pic.o phys-load.pic.o blob.pic.o blob-headers.pic.o page-map.pic.o row-id.pic.o row-len.pic.o fixed-row-len.pic.o merge.pic.o split.pic.o compare.pic.o meta-read.pic.o meta-value.pic.o meta-attr-read.pic.o cast.pic.o range-validate.pic.o parameter-read.pic.o redimension.pic.o index_project.pic.o index_lookup.pic.o transpose.pic.o delta_average.pic.o report-vdb.pic.o wdbmgr.pic.o wlinker.pic.o wdatabase.pic.o wtable.pic.o wcursor.pic.o wcolumn.pic.o wprod.pic.o wphys.pic.o meta-write.pic.o meta-attr-write.pic.o meta-append.pic.o index_insert.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vdb' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vdb' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vxf' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ceil.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/ceil.c -D__mod_name__=libs/vxf -D__file_name__=ceil -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o clip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/clip.c -D__mod_name__=libs/vxf -D__file_name__=clip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cut.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/cut.c -D__mod_name__=libs/vxf -D__file_name__=cut -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o echo.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/echo.c -D__mod_name__=libs/vxf -D__file_name__=echo -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o exists.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/exists.c -D__mod_name__=libs/vxf -D__file_name__=exists -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o paste.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/paste.c -D__mod_name__=libs/vxf -D__file_name__=paste -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o floor.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/floor.c -D__mod_name__=libs/vxf -D__file_name__=floor -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o round.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/round.c -D__mod_name__=libs/vxf -D__file_name__=round -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trunc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/trunc.c -D__mod_name__=libs/vxf -D__file_name__=trunc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o unzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unzip.c -D__mod_name__=libs/vxf -D__file_name__=unzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o map.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/map.c -D__mod_name__=libs/vxf -D__file_name__=map -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o funzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/funzip.c -D__mod_name__=libs/vxf -D__file_name__=funzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o vec-sum.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/vec-sum.c -D__mod_name__=libs/vxf -D__file_name__=vec-sum -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o min.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/min.c -D__mod_name__=libs/vxf -D__file_name__=min -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o max.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/max.c -D__mod_name__=libs/vxf -D__file_name__=max -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rldecode.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/rldecode.c -D__mod_name__=libs/vxf -D__file_name__=rldecode -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pack.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/pack.c -D__mod_name__=libs/vxf -D__file_name__=pack -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o unpack.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unpack.c -D__mod_name__=libs/vxf -D__file_name__=unpack -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o izip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/izip.c -D__mod_name__=libs/vxf -D__file_name__=izip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o iunzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/iunzip.c -D__mod_name__=libs/vxf -D__file_name__=iunzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o diff.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/diff.c -D__mod_name__=libs/vxf -D__file_name__=diff -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sum.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sum.c -D__mod_name__=libs/vxf -D__file_name__=sum -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bit_or.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/bit_or.c -D__mod_name__=libs/vxf -D__file_name__=bit_or -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o trim.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/trim.c -D__mod_name__=libs/vxf -D__file_name__=trim -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o deriv.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/deriv.c -D__mod_name__=libs/vxf -D__file_name__=deriv -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o integral.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/integral.c -D__mod_name__=libs/vxf -D__file_name__=integral -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o integral_0.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/integral_0.c -D__mod_name__=libs/vxf -D__file_name__=integral_0 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o delta.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/delta.c -D__mod_name__=libs/vxf -D__file_name__=delta -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o undelta.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/undelta.c -D__mod_name__=libs/vxf -D__file_name__=undelta -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o add-row-id.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/add-row-id.c -D__mod_name__=libs/vxf -D__file_name__=add-row-id -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o subtract-row-id.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/subtract-row-id.c -D__mod_name__=libs/vxf -D__file_name__=subtract-row-id -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o irzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/irzip.c -D__mod_name__=libs/vxf -D__file_name__=irzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rand_4na_2na.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/rand_4na_2na.c -D__mod_name__=libs/vxf -D__file_name__=rand_4na_2na -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o outlier-encoder.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/outlier-encoder.c -D__mod_name__=libs/vxf -D__file_name__=outlier-encoder -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o outlier-decoder.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/outlier-decoder.c -D__mod_name__=libs/vxf -D__file_name__=outlier-decoder -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bunzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/bunzip.c -D__mod_name__=libs/vxf -D__file_name__=bunzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o extract_token.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/extract_token.c -D__mod_name__=libs/vxf -D__file_name__=extract_token -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o simple-sub-select.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/simple-sub-select.c -D__mod_name__=libs/vxf -D__file_name__=simple-sub-select -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sprintf.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c -D__mod_name__=libs/vxf -D__file_name__=sprintf -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o strtonum.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/strtonum.c -D__mod_name__=libs/vxf -D__file_name__=strtonum -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wgs-tokenize-accession.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/wgs-tokenize-accession.c -D__mod_name__=libs/vxf -D__file_name__=wgs-tokenize-accession -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o lower-case-tech-reads.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/lower-case-tech-reads.c -D__mod_name__=libs/vxf -D__file_name__=lower-case-tech-reads -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o zip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/zip.c -D__mod_name__=libs/vxf -D__file_name__=zip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/bzip.c -D__mod_name__=libs/vxf -D__file_name__=bzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o fzip.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/fzip.c -D__mod_name__=libs/vxf -D__file_name__=fzip -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rlencode.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/rlencode.c -D__mod_name__=libs/vxf -D__file_name__=rlencode -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o checksum.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/checksum.c -D__mod_name__=libs/vxf -D__file_name__=checksum -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c: In function 'sprintf_func': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c:252:38: warning: 'select_len' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| args [ arg_idx ] . u = select_len; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c:235:38: warning: 'start_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| args [ arg_idx ] . u = start_idx; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c:343:35: warning: 'ext_stop_index' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| select_len = args [ ext_stop_index ] . u = row_len - 1; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c:339:34: warning: 'ext_start_index' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| start_idx = args [ ext_start_index ] . u = row_len - 1; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/simple-sub-select.c: In function 'open_sub_cursor': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/simple-sub-select.c:174:41: warning: passing argument 1 of 'VCursorSetCacheCapacity' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] | |
| VCursorSetCacheCapacity(native_curs,native_cursor_cache_size); | |
| ^ | |
| In file included from /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/simple-sub-select.c:30:0: | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/vdb/cursor.h:458:24: note: expected 'VCursor * {aka struct VCursor *}' but argument is of type 'const VCursor * {aka const struct VCursor *}' | |
| VDB_EXTERN uint64_t CC VCursorSetCacheCapacity(VCursor *self,uint64_t capacity); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c: In function 'vdb_sprintf_fact': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf/sprintf.c:1272:22: warning: 'obj' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| rslt -> self = obj; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vxf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vxf' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libvxf.a ceil.pic.o clip.pic.o cut.pic.o echo.pic.o exists.pic.o floor.pic.o paste.pic.o round.pic.o trunc.pic.o unzip.pic.o map.pic.o funzip.pic.o vec-sum.pic.o min.pic.o max.pic.o rldecode.pic.o pack.pic.o unpack.pic.o izip.pic.o iunzip.pic.o diff.pic.o sum.pic.o bit_or.pic.o trim.pic.o deriv.pic.o integral.pic.o integral_0.pic.o delta.pic.o undelta.pic.o add-row-id.pic.o subtract-row-id.pic.o irzip.pic.o rand_4na_2na.pic.o outlier-encoder.pic.o outlier-decoder.pic.o bunzip.pic.o simple-sub-select.pic.o extract_token.pic.o strtonum.pic.o sprintf.pic.o wgs-tokenize-accession.pic.o lower-case-tech-reads.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwvxf.a ceil.pic.o clip.pic.o cut.pic.o echo.pic.o exists.pic.o floor.pic.o paste.pic.o round.pic.o trunc.pic.o unzip.pic.o map.pic.o funzip.pic.o vec-sum.pic.o min.pic.o max.pic.o rldecode.pic.o pack.pic.o unpack.pic.o izip.pic.o iunzip.pic.o diff.pic.o sum.pic.o bit_or.pic.o trim.pic.o deriv.pic.o integral.pic.o integral_0.pic.o delta.pic.o undelta.pic.o add-row-id.pic.o subtract-row-id.pic.o irzip.pic.o rand_4na_2na.pic.o outlier-encoder.pic.o outlier-decoder.pic.o bunzip.pic.o simple-sub-select.pic.o extract_token.pic.o strtonum.pic.o sprintf.pic.o wgs-tokenize-accession.pic.o lower-case-tech-reads.pic.o zip.pic.o bzip.pic.o fzip.pic.o rlencode.pic.o checksum.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/vxf' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/vxf' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/search' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o search.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/search.c -D__mod_name__=libs/search -D__file_name__=search -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o fgrep-dumb.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/fgrep-dumb.c -D__mod_name__=libs/search -D__file_name__=fgrep-dumb -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o fgrep-boyermoore.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/fgrep-boyermoore.c -D__mod_name__=libs/search -D__file_name__=fgrep-boyermoore -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o fgrep-aho.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/fgrep-aho.c -D__mod_name__=libs/search -D__file_name__=fgrep-aho -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o agrep-wumanber.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/agrep-wumanber.c -D__mod_name__=libs/search -D__file_name__=agrep-wumanber -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o agrep-myers.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/agrep-myers.c -D__mod_name__=libs/search -D__file_name__=agrep-myers -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o agrep-myersunltd.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/agrep-myersunltd.c -D__mod_name__=libs/search -D__file_name__=agrep-myersunltd -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o agrep-dp.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/agrep-dp.c -D__mod_name__=libs/search -D__file_name__=agrep-dp -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o nucstrstr-icc-x86_64-rel.pic.o /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search/nucstrstr-icc-x86_64-rel.pic.s | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/search' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/search' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libksrch.a search.pic.o fgrep-dumb.pic.o fgrep-boyermoore.pic.o fgrep-aho.pic.o agrep-wumanber.pic.o agrep-myers.pic.o agrep-myersunltd.pic.o agrep-dp.pic.o nucstrstr-icc-x86_64-rel.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/search' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/search' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sraxf' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o untyped.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/untyped.c -D__mod_name__=libs/sraxf -D__file_name__=untyped -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o v0-decompress-init.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/v0-decompress-init.c -D__mod_name__=libs/sraxf -D__file_name__=v0-decompress-init -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o v0-decompress.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/v0-decompress.c -D__mod_name__=libs/sraxf -D__file_name__=v0-decompress -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o v0-funcs.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/v0-funcs.c -D__mod_name__=libs/sraxf -D__file_name__=v0-funcs -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dynamic-454-read-descriptor.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/dynamic-454-read-descriptor.c -D__mod_name__=libs/sraxf -D__file_name__=dynamic-454-read-descriptor -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bio-start.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/bio-start.c -D__mod_name__=libs/sraxf -D__file_name__=bio-start -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o format-spot-name.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/format-spot-name.c -D__mod_name__=libs/sraxf -D__file_name__=format-spot-name -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o extract-name_coord.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/extract-name_coord.c -D__mod_name__=libs/sraxf -D__file_name__=extract-name_coord -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tokenize-spot_name-454.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/tokenize-spot_name-454.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-454 -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tokenize-spot_name-illumina.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/tokenize-spot_name-illumina.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-illumina -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tokenize-spot_name-helicos.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/tokenize-spot_name-helicos.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-helicos -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tokenize-spot_name-abi.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/tokenize-spot_name-abi.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-abi -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o tokenize-spot_name-ion-torrent.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/tokenize-spot_name-ion-torrent.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-ion-torrent -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dna-from-color.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/dna-from-color.c -D__mod_name__=libs/sraxf -D__file_name__=dna-from-color -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o color-from-dna.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/color-from-dna.c -D__mod_name__=libs/sraxf -D__file_name__=color-from-dna -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o spot-desc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/spot-desc.c -D__mod_name__=libs/sraxf -D__file_name__=spot-desc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o read-desc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/read-desc.c -D__mod_name__=libs/sraxf -D__file_name__=read-desc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rotate.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/rotate.c -D__mod_name__=libs/sraxf -D__file_name__=rotate -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o swap.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/swap.c -D__mod_name__=libs/sraxf -D__file_name__=swap -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o denormalize.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/denormalize.c -D__mod_name__=libs/sraxf -D__file_name__=denormalize -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o normalize.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/normalize.c -D__mod_name__=libs/sraxf -D__file_name__=normalize -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o qual4_decode.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/qual4_decode.c -D__mod_name__=libs/sraxf -D__file_name__=qual4_decode -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o read-seg-from-readn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/read-seg-from-readn.c -D__mod_name__=libs/sraxf -D__file_name__=read-seg-from-readn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o rewrite-spot-name.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/rewrite-spot-name.c -D__mod_name__=libs/sraxf -D__file_name__=rewrite-spot-name -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o make-position.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/make-position.c -D__mod_name__=libs/sraxf -D__file_name__=make-position -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o process-position.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/process-position.c -D__mod_name__=libs/sraxf -D__file_name__=process-position -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o extract-coordinates.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/extract-coordinates.c -D__mod_name__=libs/sraxf -D__file_name__=extract-coordinates -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o fpcodec.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/fpcodec.c -D__mod_name__=libs/sraxf -D__file_name__=fpcodec -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o index_lookup.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/index_lookup.c -D__mod_name__=libs/sraxf -D__file_name__=index_lookup -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o varloc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/varloc.c -D__mod_name__=libs/sraxf -D__file_name__=varloc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o extract-name_fmt.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/extract-name_fmt.c -D__mod_name__=libs/sraxf -D__file_name__=extract-name_fmt -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o extract-spot_name.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/extract-spot_name.c -D__mod_name__=libs/sraxf -D__file_name__=extract-spot_name -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stats.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/stats.c -D__mod_name__=libs/sraxf -D__file_name__=stats -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o stats_quality.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/stats_quality.c -D__mod_name__=libs/sraxf -D__file_name__=stats_quality -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o qual4_encode.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/qual4_encode.c -D__mod_name__=libs/sraxf -D__file_name__=qual4_encode -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/v0-funcs.c: In function 'sra_read_decompress_slx': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf/v0-funcs.c:108:14: warning: unused variable 'row_len' [-Wunused-variable] | |
| uint32_t row_len = HTONS ( * ( const uint16_t* ) & p [ 5 ] ); | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sraxf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sraxf' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libsraxf.a untyped.pic.o v0-decompress-init.pic.o v0-decompress.pic.o v0-funcs.pic.o bio-start.pic.o dynamic-454-read-descriptor.pic.o format-spot-name.pic.o extract-name_coord.pic.o tokenize-spot_name-454.pic.o tokenize-spot_name-illumina.pic.o tokenize-spot_name-abi.pic.o tokenize-spot_name-helicos.pic.o tokenize-spot_name-ion-torrent.pic.o color-from-dna.pic.o dna-from-color.pic.o spot-desc.pic.o read-desc.pic.o rotate.pic.o swap.pic.o denormalize.pic.o normalize.pic.o qual4_decode.pic.o read-seg-from-readn.pic.o rewrite-spot-name.pic.o make-position.pic.o process-position.pic.o extract-coordinates.pic.o fpcodec.pic.o index_lookup.pic.o varloc.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwsraxf.a untyped.pic.o v0-decompress-init.pic.o v0-decompress.pic.o v0-funcs.pic.o bio-start.pic.o dynamic-454-read-descriptor.pic.o format-spot-name.pic.o extract-name_coord.pic.o tokenize-spot_name-454.pic.o tokenize-spot_name-illumina.pic.o tokenize-spot_name-abi.pic.o tokenize-spot_name-helicos.pic.o tokenize-spot_name-ion-torrent.pic.o color-from-dna.pic.o dna-from-color.pic.o spot-desc.pic.o read-desc.pic.o rotate.pic.o swap.pic.o denormalize.pic.o normalize.pic.o qual4_decode.pic.o read-seg-from-readn.pic.o rewrite-spot-name.pic.o make-position.pic.o process-position.pic.o extract-coordinates.pic.o fpcodec.pic.o index_lookup.pic.o varloc.pic.o extract-name_fmt.pic.o extract-spot_name.pic.o stats.pic.o stats_quality.pic.o qual4_encode.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sraxf' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sraxf' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/align' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o bam.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c -D__mod_name__=libs/align -D__file_name__=bam -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align-access.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/align-access.c -D__mod_name__=libs/align -D__file_name__=align-access -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align_mgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/align_mgr.c -D__mod_name__=libs/align -D__file_name__=align_mgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o al_iterator.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/al_iterator.c -D__mod_name__=libs/align -D__file_name__=al_iterator -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ref_iterator.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/ref_iterator.c -D__mod_name__=libs/align -D__file_name__=ref_iterator -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o dna-reverse-cmpl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/dna-reverse-cmpl.c -D__mod_name__=libs/align -D__file_name__=dna-reverse-cmpl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o pl_iterator.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/pl_iterator.c -D__mod_name__=libs/align -D__file_name__=pl_iterator -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reference-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/reference-cmn.c -D__mod_name__=libs/align -D__file_name__=reference-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/reader-cmn.c -D__mod_name__=libs/align -D__file_name__=reader-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-refseq.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/reader-refseq.c -D__mod_name__=libs/align -D__file_name__=reader-refseq -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reference.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/reference.c -D__mod_name__=libs/align -D__file_name__=reference -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-wgs.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/reader-wgs.c -D__mod_name__=libs/align -D__file_name__=reader-wgs -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o refseq-mgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/refseq-mgr.c -D__mod_name__=libs/align -D__file_name__=refseq-mgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o quality-quantizer.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/quality-quantizer.c -D__mod_name__=libs/align -D__file_name__=quality-quantizer -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o writer-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-cmn.c -D__mod_name__=libs/align -D__file_name__=writer-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o writer-alignment.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-alignment.c -D__mod_name__=libs/align -D__file_name__=writer-alignment -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o writer-refseq.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-refseq.c -D__mod_name__=libs/align -D__file_name__=writer-refseq -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o writer-sequence.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-sequence.c -D__mod_name__=libs/align -D__file_name__=writer-sequence -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o writer-ref.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-ref.c -D__mod_name__=libs/align -D__file_name__=writer-ref -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o writer-reference.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c -D__mod_name__=libs/align -D__file_name__=writer-reference -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c: In function 'ReferenceMgr_OpenSeq': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c:975:24: warning: unused variable 'rc' [-Wunused-variable] | |
| rc_t const rc = RefSeqMgr_GetSeq(self->rmgr, &dummy, obj->seqId, (unsigned)string_size(obj->seqId)); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c: In function 'ReferenceMgr_ReCover': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c:1661:30: warning: variable 'num_elem_copied' set but not used [-Wunused-but-set-variable] | |
| uint64_t num_elem_copied = 0; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/reference.c: In function 'ReferenceList_MakeCursor': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/reference.c:306:22: warning: unused variable 'rctmp' [-Wunused-variable] | |
| rc_t rctmp = TableReader_OpenIndex( tmp, "i_name", &iname ); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c: In function 'BGZFileWalkBlocksND': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:297:9: warning: variable 'zr' set but not used [-Wunused-but-set-variable] | |
| int zr; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c: In function 'tag_findfirst': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:839:34: warning: pointer targets in initialization differ in signedness [-Wpointer-sign] | |
| char const *const mtag = &self->data->raw[self->extra[m].offset]; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:840:35: warning: pointer targets in passing argument 1 of 'opt_tag_cmp' differ in signedness [-Wpointer-sign] | |
| int const d = opt_tag_cmp(tag, mtag); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:814:12: note: expected 'const uint8_t * {aka const unsigned char *}' but argument is of type 'const char *' | |
| static int opt_tag_cmp(uint8_t const a[2], uint8_t const b[2]) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:840:40: warning: pointer targets in passing argument 2 of 'opt_tag_cmp' differ in signedness [-Wpointer-sign] | |
| int const d = opt_tag_cmp(tag, mtag); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:814:12: note: expected 'const uint8_t * {aka const unsigned char *}' but argument is of type 'const char * const' | |
| static int opt_tag_cmp(uint8_t const a[2], uint8_t const b[2]) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c: In function 'tag_runlength': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:857:25: warning: pointer targets in passing argument 1 of 'opt_tag_cmp' differ in signedness [-Wpointer-sign] | |
| if (opt_tag_cmp(tag, &self->data->raw[self->extra[n + at].offset]) != 0) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/bam.c:814:12: note: expected 'const uint8_t * {aka const unsigned char *}' but argument is of type 'const char *' | |
| static int opt_tag_cmp(uint8_t const a[2], uint8_t const b[2]) | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c: In function 'ReferenceMgr_Make': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c:506:39: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| unsigned const extralen = data[i].extralen; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align/writer-reference.c:430:8: note: 'data' was declared here | |
| } *data, tmp; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/align' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/align' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libncbi-bam.a bam.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libalign-writer.a dna-reverse-cmpl.pic.o reader-cmn.pic.o reference-cmn.pic.o reader-refseq.pic.o reader-wgs.pic.o refseq-mgr.pic.o writer-cmn.pic.o writer-refseq.pic.o writer-alignment.pic.o writer-sequence.pic.o writer-ref.pic.o writer-reference.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libalign-access.a align-access.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libalign-reader.a align_mgr.pic.o al_iterator.pic.o ref_iterator.pic.o pl_iterator.pic.o dna-reverse-cmpl.pic.o reference-cmn.pic.o reader-cmn.pic.o reader-refseq.pic.o reader-wgs.pic.o reference.pic.o refseq-mgr.pic.o quality-quantizer.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/align' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/align' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/axf' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ref-tbl-sub-select.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/ref-tbl-sub-select.c -D__mod_name__=libs/axf -D__file_name__=ref-tbl-sub-select -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ref-restore-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/ref-restore-read.c -D__mod_name__=libs/axf -D__file_name__=ref-restore-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align-restore-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/align-restore-read.c -D__mod_name__=libs/axf -D__file_name__=align-restore-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o raw-restore-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/raw-restore-read.c -D__mod_name__=libs/axf -D__file_name__=raw-restore-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o raw-restore-qual.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/raw-restore-qual.c -D__mod_name__=libs/axf -D__file_name__=raw-restore-qual -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o seq-restore-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/seq-restore-read.c -D__mod_name__=libs/axf -D__file_name__=seq-restore-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o seq-construct-read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/seq-construct-read.c -D__mod_name__=libs/axf -D__file_name__=seq-construct-read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o cigar.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/cigar.c -D__mod_name__=libs/axf -D__file_name__=cigar -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o project_read_from_sequence.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/project_read_from_sequence.c -D__mod_name__=libs/axf -D__file_name__=project_read_from_sequence -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o not-my-row.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/not-my-row.c -D__mod_name__=libs/axf -D__file_name__=not-my-row -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o template-len.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/template-len.c -D__mod_name__=libs/axf -D__file_name__=template-len -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o get-sam-flags.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/get-sam-flags.c -D__mod_name__=libs/axf -D__file_name__=get-sam-flags -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align-ref-pos.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/align-ref-pos.c -D__mod_name__=libs/axf -D__file_name__=align-ref-pos -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align-ref-name.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/align-ref-name.c -D__mod_name__=libs/axf -D__file_name__=align-ref-name -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align-ref-seq-id.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/align-ref-seq-id.c -D__mod_name__=libs/axf -D__file_name__=align-ref-seq-id -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align-local_ref_id.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/align-local_ref_id.c -D__mod_name__=libs/axf -D__file_name__=align-local_ref_id -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o align-local_ref_start.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/align-local_ref_start.c -D__mod_name__=libs/axf -D__file_name__=align-local_ref_start -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o generate-mismatch-qual.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/generate-mismatch-qual.c -D__mod_name__=libs/axf -D__file_name__=generate-mismatch-qual -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o mismatch-restore-qual.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/mismatch-restore-qual.c -D__mod_name__=libs/axf -D__file_name__=mismatch-restore-qual -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ref-preserve_qual.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/ref-preserve_qual.c -D__mod_name__=libs/axf -D__file_name__=ref-preserve_qual -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ref-tbl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/ref-tbl.c -D__mod_name__=libs/axf -D__file_name__=ref-tbl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o make-cmp-read_desc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/make-cmp-read_desc.c -D__mod_name__=libs/axf -D__file_name__=make-cmp-read_desc -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o get_mate_align_ids.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/get_mate_align_ids.c -D__mod_name__=libs/axf -D__file_name__=get_mate_align_ids -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o refseq-stats.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/refseq-stats.c -D__mod_name__=libs/axf -D__file_name__=refseq-stats -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/mismatch-restore-qual.c: In function 'mismatch_restore_qual_impl': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/mismatch-restore-qual.c:51:20: warning: unused variable 'nqual' [-Wunused-variable] | |
| unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/mismatch-restore-qual.c: In function 'decompress_quality_impl': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/mismatch-restore-qual.c:97:20: warning: unused variable 'nqual' [-Wunused-variable] | |
| unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/ref-restore-read.c: In function 'RestoreReadWhack': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/ref-restore-read.c:68:14: warning: variable 'rc' set but not used [-Wunused-but-set-variable] | |
| rc_t rc; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/raw-restore-read.c: In function 'raw_restore_read_impl': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/raw-restore-read.c:75:20: warning: unused variable 'strand_len' [-Wunused-variable] | |
| const uint32_t strand_len = (uint32_t)argv[ 1 ].u.data.elem_count; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/raw-restore-qual.c: In function 'raw_restore_read_impl': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/raw-restore-qual.c:53:20: warning: unused variable 'strand_len' [-Wunused-variable] | |
| const uint32_t strand_len = (uint32_t)argv[ 1 ].u.data.elem_count; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/cigar.c: In function 'generate_has_mismatch_impl': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/cigar.c:984:14: warning: unused variable 'hro_len' [-Wunused-variable] | |
| uint32_t hro_len = ( uint32_t )argv[ 2 ].u.data.elem_count; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/cigar.c: In function 'generate_mismatch_impl': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/cigar.c:1059:14: warning: unused variable 'hro_len' [-Wunused-variable] | |
| uint32_t hro_len = ( uint32_t )argv[ 2 ].u.data.elem_count; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/seq-restore-read.c: In function 'ALIGN_seq_restore_read_fact': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/seq-restore-read.c:286:20: warning: 'fself' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| rslt->self = fself; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/cigar.c: In function 'clipped_cigar_impl_v2': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf/cigar.c:1680:23: warning: 'new_cigar_len' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| INSDC_coord_len * new_cigar_len; | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/axf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/axf' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libaxf.a ref-tbl-sub-select.pic.o ref-restore-read.pic.o align-restore-read.pic.o raw-restore-read.pic.o raw-restore-qual.pic.o seq-restore-read.pic.o seq-construct-read.pic.o cigar.pic.o project_read_from_sequence.pic.o not-my-row.pic.o template-len.pic.o get-sam-flags.pic.o align-ref-pos.pic.o align-ref-name.pic.o align-ref-seq-id.pic.o align-local_ref_id.pic.o align-local_ref_start.pic.o generate-mismatch-qual.pic.o mismatch-restore-qual.pic.o ref-preserve_qual.pic.o ref-tbl.pic.o make-cmp-read_desc.pic.o get_mate_align_ids.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwaxf.a ref-tbl-sub-select.pic.o ref-restore-read.pic.o align-restore-read.pic.o raw-restore-read.pic.o raw-restore-qual.pic.o seq-restore-read.pic.o seq-construct-read.pic.o cigar.pic.o project_read_from_sequence.pic.o not-my-row.pic.o template-len.pic.o get-sam-flags.pic.o align-ref-pos.pic.o align-ref-name.pic.o align-ref-seq-id.pic.o align-local_ref_id.pic.o align-local_ref_start.pic.o generate-mismatch-qual.pic.o mismatch-restore-qual.pic.o ref-preserve_qual.pic.o ref-tbl.pic.o make-cmp-read_desc.pic.o get_mate_align_ids.pic.o refseq-stats.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/axf' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/axf' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/wgsxf' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o build_scaffold.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf/build_scaffold.c -D__mod_name__=libs/wgsxf -D__file_name__=build_scaffold -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o build_read_type.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf/build_read_type.c -D__mod_name__=libs/wgsxf -D__file_name__=build_read_type -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/wgsxf' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/wgsxf' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwgsxf.a build_scaffold.pic.o build_read_type.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwwgsxf.a build_scaffold.pic.o build_read_type.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/wgsxf' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/wgsxf' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ktst' | |
| g++ -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o testenv.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/testenv.cpp -D__mod_name__=libs/ktst -D__file_name__=testenv -D__file_ext__=cpp | |
| g++ -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o systestenv.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/unix/systestenv.cpp -D__mod_name__=libs/ktst -D__file_name__=systestenv -D__file_ext__=cpp | |
| g++ -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o testcase.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/testcase.cpp -D__mod_name__=libs/ktst -D__file_name__=testcase -D__file_ext__=cpp | |
| g++ -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o testrunner.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst/testrunner.cpp -D__mod_name__=libs/ktst -D__file_name__=testrunner -D__file_ext__=cpp | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ktst' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ktst' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libktst.a testenv.pic.o systestenv.pic.o testcase.pic.o testrunner.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ktst' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ktst' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/loader' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o mmarray.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/mmarray.c -D__mod_name__=libs/loader -D__file_name__=mmarray -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o common-reader.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/common-reader.c -D__mod_name__=libs/loader -D__file_name__=common-reader -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o common-writer.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/common-writer.c -D__mod_name__=libs/loader -D__file_name__=common-writer -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sequence-writer.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/sequence-writer.c -D__mod_name__=libs/loader -D__file_name__=sequence-writer -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reference-writer.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/reference-writer.c -D__mod_name__=libs/loader -D__file_name__=reference-writer -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o alignment-writer.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader/alignment-writer.c -D__mod_name__=libs/loader -D__file_name__=alignment-writer -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/loader' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/loader' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libloader.a mmarray.pic.o common-reader.pic.o common-writer.pic.o sequence-writer.pic.o reference-writer.pic.o alignment-writer.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/loader' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/loader' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/blast' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o blast-mgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/blast-mgr.c -D__mod_name__=libs/blast -D__file_name__=blast-mgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/reader.c -D__mod_name__=libs/blast -D__file_name__=reader -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o run-set.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast/run-set.c -D__mod_name__=libs/blast -D__file_name__=run-set -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/blast' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/blast' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libvdb-blast.a blast-mgr.pic.o reader.pic.o run-set.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/blast' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/blast' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ascp' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ascp.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/ascp.c -D__mod_name__=libs/ascp -D__file_name__=ascp -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o ascp-path.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/linux/ascp-path.c -D__mod_name__=libs/ascp -D__file_name__=ascp-path -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o connect.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp/unix/connect.c -D__mod_name__=libs/ascp -D__file_name__=connect -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ascp' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ascp' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libascp.a ascp.pic.o ascp-path.pic.o connect.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ascp' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ascp' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sra' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sramgr-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sramgr-cmn.c -D__mod_name__=libs/sra -D__file_name__=sramgr-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sratbl-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sratbl-cmn.c -D__mod_name__=libs/sra -D__file_name__=sratbl-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sracol.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sracol.c -D__mod_name__=libs/sra -D__file_name__=sracol -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o types.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/types.c -D__mod_name__=libs/sra -D__file_name__=types -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sracache.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sracache.c -D__mod_name__=libs/sra -D__file_name__=sracache -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sramgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sramgr.c -D__mod_name__=libs/sra -D__file_name__=sramgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sratbl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sratbl.c -D__mod_name__=libs/sra -D__file_name__=sratbl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wsramgr.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/wsramgr.c -D__mod_name__=libs/sra -D__file_name__=wsramgr -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wsratbl.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/wsratbl.c -D__mod_name__=libs/sra -D__file_name__=wsratbl -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-cmn.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/reader-cmn.c -D__mod_name__=libs/sra -D__file_name__=reader-cmn -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-fastq.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/reader-fastq.c -D__mod_name__=libs/sra -D__file_name__=reader-fastq -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-sff.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/reader-sff.c -D__mod_name__=libs/sra -D__file_name__=reader-sff -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-illumina.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/reader-illumina.c -D__mod_name__=libs/sra -D__file_name__=reader-illumina -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o reader-abi.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/reader-abi.c -D__mod_name__=libs/sra -D__file_name__=reader-abi -D__file_ext__=c | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sra' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sra' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sraschema-stub.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sraschema-stub.c -D__mod_name__=libs/sra -D__file_name__=sraschema-stub -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sraschema.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sraschema.c -D__mod_name__=libs/sra -D__file_name__=sraschema -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sra-dflt-schema.o -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/sra-dflt-schema.c -D__mod_name__=libs/sra -D__file_name__=sra-dflt-schema -D__file_ext__=c | |
| gcc -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/sra-dflt-schema -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -DNDEBUG -m64 -DNDEBUG -m64 sra-dflt-schema.o -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/lib -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp-norsrc -lvdb -laxf -lsraxf -lwgsxf -lvxf -lalign-reader -lkdb -lvfs -lkns -lksrch -lkrypto -lkfg -lkfs -lksproc -lklib -ljudy -Wl,-Bdynamic -ldl -Wl,-Bstatic -lz -lbz2 -Wl,-Bdynamic -lpthread -lm | |
| /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/sra-dflt-schema -osra-schema.c -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -T/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sra/sra-schema.c.d /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/built-in.vschema | |
| cp sra-schema.c /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o sra-schema.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY sra-schema.c -D__mod_name__=libs/sra -D__file_name__=sra-schema -D__file_ext__=c | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libsraschema.a sraschema-stub.pic.o sraschema.pic.o sra-schema.pic.o | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -MD -o wsraschema-stub.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra/wsraschema-stub.c -D__mod_name__=libs/sra -D__file_name__=wsraschema-stub -D__file_ext__=c | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwsraschema.a wsraschema-stub.pic.o sraschema.pic.o sra-schema.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libsradb.a sramgr-cmn.pic.o sratbl-cmn.pic.o sracol.pic.o types.pic.o sracache.pic.o sramgr.pic.o sratbl.pic.o ld-tmp/sraschema-sraschema-stub.pic.o ld-tmp/sraschema-sraschema.pic.o ld-tmp/sraschema-sra-schema.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libwsradb.a sramgr-cmn.pic.o sratbl-cmn.pic.o sracol.pic.o types.pic.o sracache.pic.o wsramgr.pic.o wsratbl.pic.o ld-tmp/wsraschema-wsraschema-stub.pic.o ld-tmp/wsraschema-sraschema.pic.o ld-tmp/wsraschema-sra-schema.pic.o | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libsrareader.a reader-cmn.pic.o reader-fastq.pic.o reader-sff.pic.o reader-illumina.pic.o reader-abi.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/sra' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/sra' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NCBI-NGS.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NCBI-NGS.c -D__mod_name__=libs/ngs -D__file_name__=NCBI-NGS -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o CSRA1_PileupEvent.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_PileupEvent.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_PileupEvent -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o CSRA1_Pileup.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_Pileup.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_Pileup -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o CSRA1_Alignment.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_Alignment.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_Alignment -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o CSRA1_ReferenceWindow.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_ReferenceWindow.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_ReferenceWindow -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o CSRA1_Reference.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_Reference.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_Reference -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o CSRA1_ReadCollection.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_ReadCollection -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o SRA_Statistics.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_Statistics.c -D__mod_name__=libs/ngs -D__file_name__=SRA_Statistics -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o SRA_DB_ReadCollection.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_DB_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=SRA_DB_ReadCollection -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o SRA_Read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_Read.c -D__mod_name__=libs/ngs -D__file_name__=SRA_Read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o SRA_ReadGroup.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_ReadGroup.c -D__mod_name__=libs/ngs -D__file_name__=SRA_ReadGroup -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o SRA_ReadGroupInfo.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_ReadGroupInfo.c -D__mod_name__=libs/ngs -D__file_name__=SRA_ReadGroupInfo -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o SRA_ReadCollection.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=SRA_ReadCollection -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Statistics.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Statistics.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Statistics -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_ReadCollection.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=NGS_ReadCollection -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_PileupEvent.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_PileupEvent.c -D__mod_name__=libs/ngs -D__file_name__=NGS_PileupEvent -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Pileup.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Pileup.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Pileup -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_ReadGroup.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_ReadGroup.c -D__mod_name__=libs/ngs -D__file_name__=NGS_ReadGroup -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Alignment.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Alignment.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Alignment -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Reference.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Reference.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Reference -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Read.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Read.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Read -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Fragment.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Fragment.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Fragment -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Cursor.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Cursor.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Cursor -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Refcount.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Refcount.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Refcount -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_String.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_String.c -D__mod_name__=libs/ngs -D__file_name__=NGS_String -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_Id.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_Id.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Id -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NGS_ErrBlock.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/NGS_ErrBlock.c -D__mod_name__=libs/ngs -D__file_name__=NGS_ErrBlock -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_DB_ReadCollection.c:342:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] | |
| SRA_DB_ReadCollectionGetReadCount, | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_DB_ReadCollection.c:342:5: note: (near initialization for 'SRA_DB_ReadCollection_vt.get_read_count') | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_PileupEvent.c: In function 'CSRA1_PileupEventRefreshEntry': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_PileupEvent.c:815:26: warning: variable 'HAS_REF_OFFSET' set but not used [-Wunused-but-set-variable] | |
| const bool * HAS_REF_OFFSET; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_PileupEvent.c:812:25: warning: variable 'REF_OFFSET' set but not used [-Wunused-but-set-variable] | |
| const int32_t * REF_OFFSET; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_PileupEvent.c:809:18: warning: variable 'HAS_MISMATCH' set but not used [-Wunused-but-set-variable] | |
| const bool * HAS_MISMATCH; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_PileupEvent.c: In function 'CSRA1_PileupEventIteratorNext': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_PileupEvent.c:832:20: warning: unused variable 'pileup' [-Wunused-variable] | |
| CSRA1_Pileup * pileup = CSRA1_PileupEventGetPileup ( self ); | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_ReadCollection.c:320:5: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] | |
| SRA_ReadCollectionGetReadCount, | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/SRA_ReadCollection.c:320:5: note: (near initialization for 'SRA_ReadCollection_vt.get_read_count') | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs/CSRA1_Pileup.c:344:9: warning: 'CSRA1_Pileup_AlignCursorDataGetUInt8' defined but not used [-Wunused-function] | |
| uint8_t CSRA1_Pileup_AlignCursorDataGetUInt8 ( CSRA1_Pileup_AlignCursorData * self, ctx_t ctx, | |
| ^ | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libngs.a NCBI-NGS.pic.o CSRA1_PileupEvent.pic.o CSRA1_Pileup.pic.o CSRA1_Alignment.pic.o CSRA1_ReferenceWindow.pic.o CSRA1_Reference.pic.o CSRA1_ReadCollection.pic.o SRA_Statistics.pic.o SRA_DB_ReadCollection.pic.o SRA_Read.pic.o SRA_ReadGroup.pic.o SRA_ReadGroupInfo.pic.o SRA_ReadCollection.pic.o NGS_Statistics.pic.o NGS_ReadCollection.pic.o NGS_PileupEvent.pic.o NGS_Pileup.pic.o NGS_ReadGroup.pic.o NGS_Alignment.pic.o NGS_Reference.pic.o NGS_Read.pic.o NGS_Fragment.pic.o NGS_Cursor.pic.o NGS_Refcount.pic.o NGS_String.pic.o NGS_Id.pic.o NGS_ErrBlock.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-c++' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs-c++' | |
| g++ -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-c++/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-c++/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-c++ -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-c++/../ngs -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/../ngs/ngs-sdk -MD -o NCBI-NGS.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-c++/NCBI-NGS.cpp -D__mod_name__=libs/ngs-c++ -D__file_name__=NCBI-NGS -D__file_ext__=cpp | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/lib/libncbi-ngs-c++.a.2.5.0 NCBI-NGS.pic.o | |
| ln -s libncbi-ngs-c++.a.2.5.0 libncbi-ngs-c++.a.2 | |
| ln -s libncbi-ngs-c++.a.2 libncbi-ngs-c++.a | |
| ln -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs-c++' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-c++' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs-jni' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/../ngs -MD -o jni_Manager.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/jni_Manager.c -D__mod_name__=libs/ngs-jni -D__file_name__=jni_Manager -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/jni_Manager.c: In function 'Java_gov_nih_nlm_ncbi_ngs_Manager_Version': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/jni_Manager.c:134:5: warning: 'memset' used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] | |
| memset(&version, sizeof version, 0); | |
| ^ | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/../ngs -MD -o jni_String.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/jni_String.c -D__mod_name__=libs/ngs-jni -D__file_name__=jni_String -D__file_ext__=c | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/../ngs -MD -o jni_ErrorMsg.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni/jni_ErrorMsg.c -D__mod_name__=libs/ngs-jni -D__file_name__=jni_ErrorMsg -D__file_ext__=c | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libngs-jni.a jni_Manager.pic.o jni_String.pic.o jni_ErrorMsg.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs-jni' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-jni' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-py' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs-py' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-py/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-py/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-py -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-py/../ngs -MD -o py_Manager.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-py/py_Manager.c -D__mod_name__=libs/ngs-py -D__file_name__=py_Manager -D__file_ext__=c | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libngs-py.a py_Manager.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ngs-py' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ngs-py' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kxml' | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/usr/include/libxml2 -MD -o xml.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/xml.c -D__mod_name__=libs/kxml -D__file_name__=xml -D__file_ext__=c | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkxml.a xml.pic.o | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/usr/include/libxml2 -MD -o xtoc.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/xtoc.c -D__mod_name__=libs/kxml -D__file_name__=xtoc -D__file_ext__=c | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/xtoc.c: In function 'XTocTreeAddSymlink': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/xtoc.c:532:13: warning: 'entry' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| *pentry = entry; | |
| ^ | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/xtoc.c: In function 'XTocTreeAddFile': | |
| /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/xtoc.c:578:13: warning: 'entry' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| *pentry = entry; | |
| ^ | |
| gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/override -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc/x86_64 -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/cc/gcc -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/linux -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/os/unix -I/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/interfaces/ext -I/bio/linuxbrew/Cellar/sratoolkit/2.5.0/include -I. -I/usr/include/libxml2 -MD -o xtoc-parsexml.pic.o -fPIC -O3 -Wall -Wno-variadic-macros -fno-strict-aliasing -D_LIBRARY /tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml/xtoc-parsexml.c -D__mod_name__=libs/kxml -D__file_name__=xtoc-parsexml -D__file_ext__=c | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib/libkxfs.a xtoc.pic.o xtoc-parsexml.pic.o | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/kxml' | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/kxml' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/hdf5' | |
| NOTE - library libkdf5 cannot be built: It requires 'libhdf5' and its development headers. | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/hdf5' | |
| make[2]: Entering directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ncbi-vdb' | |
| make[3]: Entering directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ncbi-vdb' | |
| ar -rc /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/lib/libncbi-vdb.a.2.5.0 ld-tmp/align-reader-align_mgr.pic.o ld-tmp/align-reader-al_iterator.pic.o ld-tmp/align-reader-ref_iterator.pic.o ld-tmp/align-reader-pl_iterator.pic.o ld-tmp/align-reader-dna-reverse-cmpl.pic.o ld-tmp/align-reader-reference-cmn.pic.o ld-tmp/align-reader-reader-cmn.pic.o ld-tmp/align-reader-reader-refseq.pic.o ld-tmp/align-reader-reader-wgs.pic.o ld-tmp/align-reader-reference.pic.o ld-tmp/align-reader-refseq-mgr.pic.o ld-tmp/align-reader-quality-quantizer.pic.o ld-tmp/ascp-ascp.pic.o ld-tmp/ascp-ascp-path.pic.o ld-tmp/ascp-connect.pic.o ld-tmp/axf-ref-tbl-sub-select.pic.o ld-tmp/axf-ref-restore-read.pic.o ld-tmp/axf-align-restore-read.pic.o ld-tmp/axf-raw-restore-read.pic.o ld-tmp/axf-raw-restore-qual.pic.o ld-tmp/axf-seq-restore-read.pic.o ld-tmp/axf-seq-construct-read.pic.o ld-tmp/axf-cigar.pic.o ld-tmp/axf-project_read_from_sequence.pic.o ld-tmp/axf-not-my-row.pic.o ld-tmp/axf-template-len.pic.o ld-tmp/axf-get-sam-flags.pic.o ld-tmp/axf-align-ref-pos.pic.o ld-tmp/axf-align-ref-name.pic.o ld-tmp/axf-align-ref-seq-id.pic.o ld-tmp/axf-align-local_ref_id.pic.o ld-tmp/axf-align-local_ref_start.pic.o ld-tmp/axf-generate-mismatch-qual.pic.o ld-tmp/axf-mismatch-restore-qual.pic.o ld-tmp/axf-ref-preserve_qual.pic.o ld-tmp/axf-ref-tbl.pic.o ld-tmp/axf-make-cmp-read_desc.pic.o ld-tmp/axf-get_mate_align_ids.pic.o ld-tmp/sraxf-untyped.pic.o ld-tmp/sraxf-v0-decompress-init.pic.o ld-tmp/sraxf-v0-decompress.pic.o ld-tmp/sraxf-v0-funcs.pic.o ld-tmp/sraxf-bio-start.pic.o ld-tmp/sraxf-dynamic-454-read-descriptor.pic.o ld-tmp/sraxf-format-spot-name.pic.o ld-tmp/sraxf-extract-name_coord.pic.o ld-tmp/sraxf-tokenize-spot_name-454.pic.o ld-tmp/sraxf-tokenize-spot_name-illumina.pic.o ld-tmp/sraxf-tokenize-spot_name-abi.pic.o ld-tmp/sraxf-tokenize-spot_name-helicos.pic.o ld-tmp/sraxf-tokenize-spot_name-ion-torrent.pic.o ld-tmp/sraxf-color-from-dna.pic.o ld-tmp/sraxf-dna-from-color.pic.o ld-tmp/sraxf-spot-desc.pic.o ld-tmp/sraxf-read-desc.pic.o ld-tmp/sraxf-rotate.pic.o ld-tmp/sraxf-swap.pic.o ld-tmp/sraxf-denormalize.pic.o ld-tmp/sraxf-normalize.pic.o ld-tmp/sraxf-qual4_decode.pic.o ld-tmp/sraxf-read-seg-from-readn.pic.o ld-tmp/sraxf-rewrite-spot-name.pic.o ld-tmp/sraxf-make-position.pic.o ld-tmp/sraxf-process-position.pic.o ld-tmp/sraxf-extract-coordinates.pic.o ld-tmp/sraxf-fpcodec.pic.o ld-tmp/sraxf-index_lookup.pic.o ld-tmp/sraxf-varloc.pic.o ld-tmp/wgsxf-build_scaffold.pic.o ld-tmp/wgsxf-build_read_type.pic.o ld-tmp/vxf-ceil.pic.o ld-tmp/vxf-clip.pic.o ld-tmp/vxf-cut.pic.o ld-tmp/vxf-echo.pic.o ld-tmp/vxf-exists.pic.o ld-tmp/vxf-floor.pic.o ld-tmp/vxf-paste.pic.o ld-tmp/vxf-round.pic.o ld-tmp/vxf-trunc.pic.o ld-tmp/vxf-unzip.pic.o ld-tmp/vxf-map.pic.o ld-tmp/vxf-funzip.pic.o ld-tmp/vxf-vec-sum.pic.o ld-tmp/vxf-min.pic.o ld-tmp/vxf-max.pic.o ld-tmp/vxf-rldecode.pic.o ld-tmp/vxf-pack.pic.o ld-tmp/vxf-unpack.pic.o ld-tmp/vxf-izip.pic.o ld-tmp/vxf-iunzip.pic.o ld-tmp/vxf-diff.pic.o ld-tmp/vxf-sum.pic.o ld-tmp/vxf-bit_or.pic.o ld-tmp/vxf-trim.pic.o ld-tmp/vxf-deriv.pic.o ld-tmp/vxf-integral.pic.o ld-tmp/vxf-integral_0.pic.o ld-tmp/vxf-delta.pic.o ld-tmp/vxf-undelta.pic.o ld-tmp/vxf-add-row-id.pic.o ld-tmp/vxf-subtract-row-id.pic.o ld-tmp/vxf-irzip.pic.o ld-tmp/vxf-rand_4na_2na.pic.o ld-tmp/vxf-outlier-encoder.pic.o ld-tmp/vxf-outlier-decoder.pic.o ld-tmp/vxf-bunzip.pic.o ld-tmp/vxf-simple-sub-select.pic.o ld-tmp/vxf-extract_token.pic.o ld-tmp/vxf-strtonum.pic.o ld-tmp/vxf-sprintf.pic.o ld-tmp/vxf-wgs-tokenize-accession.pic.o ld-tmp/vxf-lower-case-tech-reads.pic.o ld-tmp/srareader-reader-cmn.pic.o ld-tmp/srareader-reader-fastq.pic.o ld-tmp/srareader-reader-sff.pic.o ld-tmp/srareader-reader-illumina.pic.o ld-tmp/srareader-reader-abi.pic.o ld-tmp/sradb-sramgr-cmn.pic.o ld-tmp/sradb-sratbl-cmn.pic.o ld-tmp/sradb-sracol.pic.o ld-tmp/sradb-types.pic.o ld-tmp/sradb-sracache.pic.o ld-tmp/sradb-sramgr.pic.o ld-tmp/sradb-sratbl.pic.o ld-tmp/sradb-sraschema-sraschema-stub.pic.o ld-tmp/sradb-sraschema-sraschema.pic.o ld-tmp/sradb-sraschema-sra-schema.pic.o ld-tmp/vdb-blast-blast-mgr.pic.o ld-tmp/vdb-blast-reader.pic.o ld-tmp/vdb-blast-run-set.pic.o ld-tmp/vdb-dbmgr-cmn.pic.o ld-tmp/vdb-schema-tok.pic.o ld-tmp/vdb-schema-parse.pic.o ld-tmp/vdb-schema-type.pic.o ld-tmp/vdb-schema-func.pic.o ld-tmp/vdb-schema-prod.pic.o ld-tmp/vdb-schema-expr.pic.o ld-tmp/vdb-schema-eval.pic.o ld-tmp/vdb-schema-tbl.pic.o ld-tmp/vdb-schema-db.pic.o ld-tmp/vdb-schema-dump.pic.o ld-tmp/vdb-schema-int.pic.o ld-tmp/vdb-schema.pic.o ld-tmp/vdb-linker-int.pic.o ld-tmp/vdb-linker-cmn.pic.o ld-tmp/vdb-database-cmn.pic.o ld-tmp/vdb-database-depend.pic.o ld-tmp/vdb-database-load.pic.o ld-tmp/vdb-table-cmn.pic.o ld-tmp/vdb-table-load.pic.o ld-tmp/vdb-cursor-cmn.pic.o ld-tmp/vdb-column-cmn.pic.o ld-tmp/vdb-prod-cmn.pic.o ld-tmp/vdb-prod-expr.pic.o ld-tmp/vdb-prod-func.pic.o ld-tmp/vdb-phys-cmn.pic.o ld-tmp/vdb-phys-load.pic.o ld-tmp/vdb-blob.pic.o ld-tmp/vdb-blob-headers.pic.o ld-tmp/vdb-page-map.pic.o ld-tmp/vdb-row-id.pic.o ld-tmp/vdb-row-len.pic.o ld-tmp/vdb-fixed-row-len.pic.o ld-tmp/vdb-merge.pic.o ld-tmp/vdb-split.pic.o ld-tmp/vdb-compare.pic.o ld-tmp/vdb-meta-read.pic.o ld-tmp/vdb-meta-value.pic.o ld-tmp/vdb-meta-attr-read.pic.o ld-tmp/vdb-cast.pic.o ld-tmp/vdb-range-validate.pic.o ld-tmp/vdb-parameter-read.pic.o ld-tmp/vdb-redimension.pic.o ld-tmp/vdb-index_project.pic.o ld-tmp/vdb-index_lookup.pic.o ld-tmp/vdb-transpose.pic.o ld-tmp/vdb-delta_average.pic.o ld-tmp/vdb-report-vdb.pic.o ld-tmp/vdb-dbmgr.pic.o ld-tmp/vdb-linker.pic.o ld-tmp/vdb-database.pic.o ld-tmp/vdb-table.pic.o ld-tmp/vdb-cursor.pic.o ld-tmp/vdb-column.pic.o ld-tmp/vdb-prod.pic.o ld-tmp/vdb-phys.pic.o ld-tmp/kdb-btree.pic.o ld-tmp/kdb-dbmgr-cmn.pic.o ld-tmp/kdb-kdb.pic.o ld-tmp/kdb-dbmgr.pic.o ld-tmp/kdb-dbcc-cmn.pic.o ld-tmp/kdb-database.pic.o ld-tmp/kdb-database-cc.pic.o ld-tmp/kdb-table.pic.o ld-tmp/kdb-table-cc.pic.o ld-tmp/kdb-column.pic.o ld-tmp/kdb-column-cc.pic.o ld-tmp/kdb-coldata.pic.o ld-tmp/kdb-colidx.pic.o ld-tmp/kdb-colidx0.pic.o ld-tmp/kdb-colidx1.pic.o ld-tmp/kdb-colidx2.pic.o ld-tmp/kdb-idxblk.pic.o ld-tmp/kdb-meta.pic.o ld-tmp/kdb-index.pic.o ld-tmp/kdb-idstats.pic.o ld-tmp/kdb-trieidx-v1.pic.o ld-tmp/kdb-trieval-v1.pic.o ld-tmp/kdb-ptrieval-v1.pic.o ld-tmp/kdb-trieidx-v2.pic.o ld-tmp/kdb-trieval-v2.pic.o ld-tmp/kdb-ptrieval-v2.pic.o ld-tmp/kdb-u64idx-v3.pic.o ld-tmp/align-access-align-access.pic.o ld-tmp/ncbi-bam-bam.pic.o ld-tmp/vfs-path.pic.o ld-tmp/vfs-syspath.pic.o ld-tmp/vfs-manager.pic.o ld-tmp/vfs-resolver.pic.o ld-tmp/kxml-xml.pic.o ld-tmp/kxfs-xtoc.pic.o ld-tmp/kxfs-xtoc-parsexml.pic.o ld-tmp/kns-kns_manager-ext.pic.o ld-tmp/kns-manager.pic.o ld-tmp/kns-stream.pic.o ld-tmp/kns-stream-from-files.pic.o ld-tmp/kns-stream-from-streams.pic.o ld-tmp/kns-endpoint.pic.o ld-tmp/kns-sysendpoint.pic.o ld-tmp/kns-syssock.pic.o ld-tmp/kns-sysstream.pic.o ld-tmp/kns-sysmgr.pic.o ld-tmp/kns-syspoll.pic.o ld-tmp/kns-http-file.pic.o ld-tmp/kns-http-client.pic.o ld-tmp/kns-http-retrier.pic.o ld-tmp/kns-http.pic.o ld-tmp/kfg-config-lex.pic.o ld-tmp/kfg-config-grammar.pic.o ld-tmp/kfg-config.pic.o ld-tmp/kfg-config-aws.pic.o ld-tmp/kfg-kart.pic.o ld-tmp/kfg-repository.pic.o ld-tmp/kfg-properties.pic.o ld-tmp/kfg-ngc.pic.o ld-tmp/kfg-report-kfg.pic.o ld-tmp/kfg-keystore.pic.o ld-tmp/krypto-ciphermgr.pic.o ld-tmp/krypto-wgaencrypt.pic.o ld-tmp/krypto-encfile.pic.o ld-tmp/krypto-encfilev2.pic.o ld-tmp/krypto-cipher.pic.o ld-tmp/krypto-aes_core.pic.o ld-tmp/krypto-aes-byte.pic.o ld-tmp/krypto-cipher-byte.pic.o ld-tmp/krypto-key.pic.o ld-tmp/krypto-reencfile.pic.o ld-tmp/krypto-cipher-vec.vec.pic.o ld-tmp/krypto-aes-ncbi.vec.pic.o ld-tmp/krypto-cipher-vec.vecreg.pic.o ld-tmp/krypto-aes-ncbi.vecreg.pic.o ld-tmp/krypto-cipher-vec.aes-ni.pic.o ld-tmp/krypto-aes-ncbi.aes-ni.pic.o ld-tmp/krypto-no-null-ncbi.pic.o ld-tmp/krypto-no-null-ncbi.vec.pic.o ld-tmp/krypto-no-null-ncbi.vecreg.pic.o ld-tmp/krypto-no-null-ncbi.aes-ni.pic.o ld-tmp/ksrch-search.pic.o ld-tmp/ksrch-fgrep-dumb.pic.o ld-tmp/ksrch-fgrep-boyermoore.pic.o ld-tmp/ksrch-fgrep-aho.pic.o ld-tmp/ksrch-agrep-wumanber.pic.o ld-tmp/ksrch-agrep-myers.pic.o ld-tmp/ksrch-agrep-myersunltd.pic.o ld-tmp/ksrch-agrep-dp.pic.o ld-tmp/ksrch-nucstrstr-icc-x86_64-rel.pic.o ld-tmp/kfs-mmap.pic.o ld-tmp/kfs-directory.pic.o ld-tmp/kfs-arrayfile.pic.o ld-tmp/kfs-file.pic.o ld-tmp/kfs-sysdir.pic.o ld-tmp/kfs-sysfile.pic.o ld-tmp/kfs-sysmmap.pic.o ld-tmp/kfs-syslockfile.pic.o ld-tmp/kfs-sysdll.pic.o ld-tmp/kfs-gzip.pic.o ld-tmp/kfs-bzip.pic.o ld-tmp/kfs-md5.pic.o ld-tmp/kfs-crc32.pic.o ld-tmp/kfs-arc.pic.o ld-tmp/kfs-toc.pic.o ld-tmp/kfs-tocentry.pic.o ld-tmp/kfs-tocdir.pic.o ld-tmp/kfs-tocfile.pic.o ld-tmp/kfs-sra.pic.o ld-tmp/kfs-tar.pic.o ld-tmp/kfs-teefile.pic.o ld-tmp/kfs-buffile.pic.o ld-tmp/kfs-buffile-read.pic.o ld-tmp/kfs-buffile-write.pic.o ld-tmp/kfs-subfile.pic.o ld-tmp/kfs-nullfile.pic.o ld-tmp/kfs-countfile.pic.o ld-tmp/kfs-dir_test.pic.o ld-tmp/kfs-pagefile.pic.o ld-tmp/kfs-pmem.pic.o ld-tmp/kfs-readheadfile.pic.o ld-tmp/kfs-ramfile.pic.o ld-tmp/kfs-extendable-ramfile.pic.o ld-tmp/kfs-quickmount.pic.o ld-tmp/kfs-report.pic.o ld-tmp/kfs-lockfile.pic.o ld-tmp/kfs-cacheteefile.pic.o ld-tmp/kfs-from_to_namelist.pic.o ld-tmp/klib-text.pic.o ld-tmp/klib-time.pic.o ld-tmp/klib-utf8.pic.o ld-tmp/klib-iso8859.pic.o ld-tmp/klib-iso8859-1.pic.o ld-tmp/klib-cp1252.pic.o ld-tmp/klib-token.pic.o ld-tmp/klib-symtab.pic.o ld-tmp/klib-container.pic.o ld-tmp/klib-vector.pic.o ld-tmp/klib-namelist.pic.o ld-tmp/klib-vector_namelist.pic.o ld-tmp/klib-trie.pic.o ld-tmp/klib-pbstree.pic.o ld-tmp/klib-pbstree-impl.nopt.pic.o ld-tmp/klib-pbstree-impl.swap.nopt.pic.o ld-tmp/klib-bstpersist.nopt.pic.o ld-tmp/klib-ptrie.nopt.pic.o ld-tmp/klib-ptpersist.nopt.pic.o ld-tmp/klib-crc32.pic.o ld-tmp/klib-md5.pic.o ld-tmp/klib-misc.pic.o ld-tmp/klib-SHA-32bit.pic.o ld-tmp/klib-SHA-64bit.pic.o ld-tmp/klib-qsort.pic.o ld-tmp/klib-ksort.pic.o ld-tmp/klib-bsearch.pic.o ld-tmp/klib-pack.pic.o ld-tmp/klib-unpack.pic.o ld-tmp/klib-vlen-encode.pic.o ld-tmp/klib-data-buffer.pic.o ld-tmp/klib-refcount.pic.o ld-tmp/klib-printf.pic.o ld-tmp/klib-status-rc-strings.pic.o ld-tmp/klib-status-rc.pic.o ld-tmp/klib-syserrcode.pic.o ld-tmp/klib-syswriter.pic.o ld-tmp/klib-out.pic.o ld-tmp/klib-status.pic.o ld-tmp/klib-log.pic.o ld-tmp/klib-writer.pic.o ld-tmp/klib-syslog.pic.o ld-tmp/klib-systime.pic.o ld-tmp/klib-rc-tbl.pic.o ld-tmp/klib-rc-idx-tbl.pic.o ld-tmp/klib-judy-vector.pic.o ld-tmp/klib-report-klib.pic.o ld-tmp/klib-num-gen.pic.o ld-tmp/klib-progressbar.pic.o ld-tmp/klib-sra-release-version.pic.o ld-tmp/klib-judy-JudyMalloc.n.64.pic.o ld-tmp/klib-judy-JudySL.n.64.pic.o ld-tmp/klib-judy-JudyHS.n.64.pic.o ld-tmp/klib-judy-JudyGet.w.64.pic.o ld-tmp/klib-judy-JudyIns.w.64.pic.o ld-tmp/klib-judy-JudyInsArray.w.64.pic.o ld-tmp/klib-judy-JudyDel.w.64.pic.o ld-tmp/klib-judy-JudyCascade.w.64.pic.o ld-tmp/klib-judy-JudyCount.w.64.pic.o ld-tmp/klib-judy-JudyCreateBranch.w.64.pic.o ld-tmp/klib-judy-JudyDecascade.w.64.pic.o ld-tmp/klib-judy-JudyFirst.w.64.pic.o ld-tmp/klib-judy-JudyFreeArray.w.64.pic.o ld-tmp/klib-judy-JudyInsertBranch.w.64.pic.o ld-tmp/klib-judy-JudyMallocIF.w.64.pic.o ld-tmp/klib-judy-JudyMemActive.w.64.pic.o ld-tmp/klib-judy-JudyMemUsed.w.64.pic.o ld-tmp/klib-judy-JudyNext.w.64.pic.o ld-tmp/klib-judy-JudyNextEmpty.w.64.pic.o ld-tmp/klib-judy-JudyPrev.w.64.pic.o ld-tmp/klib-judy-JudyPrevEmpty.w.64.pic.o ld-tmp/klib-judy-JudyByCountWithDefs.w.64.pic.o ld-tmp/klib-judy-j__udyGet.w.64.pic.o ld-tmp/klib-judy-_JudyLTables.w.64.pic.o ld-tmp/klib-judy-JudyGet.b.64.pic.o ld-tmp/klib-judy-JudyIns.b.64.pic.o ld-tmp/klib-judy-JudyInsArray.b.64.pic.o ld-tmp/klib-judy-JudyDel.b.64.pic.o ld-tmp/klib-judy-JudyCascade.b.64.pic.o ld-tmp/klib-judy-JudyCount.b.64.pic.o ld-tmp/klib-judy-JudyCreateBranch.b.64.pic.o ld-tmp/klib-judy-JudyDecascade.b.64.pic.o ld-tmp/klib-judy-JudyFirst.b.64.pic.o ld-tmp/klib-judy-JudyFreeArray.b.64.pic.o ld-tmp/klib-judy-JudyInsertBranch.b.64.pic.o ld-tmp/klib-judy-JudyMallocIF.b.64.pic.o ld-tmp/klib-judy-JudyMemActive.b.64.pic.o ld-tmp/klib-judy-JudyMemUsed.b.64.pic.o ld-tmp/klib-judy-JudyNext.b.64.pic.o ld-tmp/klib-judy-JudyNextEmpty.b.64.pic.o ld-tmp/klib-judy-JudyPrev.b.64.pic.o ld-tmp/klib-judy-JudyPrevEmpty.b.64.pic.o ld-tmp/klib-judy-JudyByCountWithDefs.b.64.pic.o ld-tmp/klib-judy-j__udyGet.b.64.pic.o ld-tmp/klib-judy-_Judy1Tables.b.64.pic.o ld-tmp/kproc-task.pic.o ld-tmp/kproc-sysmgr.pic.o ld-tmp/kproc-procmgr.pic.o ld-tmp/kproc-systimeout.pic.o ld-tmp/kproc-syslock.pic.o ld-tmp/kproc-systhread.pic.o ld-tmp/kproc-syscond.pic.o ld-tmp/kproc-sem.pic.o ld-tmp/kq-queue.pic.o ld-tmp/kfc-refcount.pic.o ld-tmp/kfc-tstate.pic.o ld-tmp/kfc-sysrsrc.pic.o ld-tmp/kfc-rsrc.pic.o ld-tmp/kfc-vtbl.pic.o ld-tmp/kfc-sysctx.pic.o ld-tmp/kfc-except.pic.o ld-tmp/kfc-xc.pic.o ld-tmp/bz2-blocksort.pic.o ld-tmp/bz2-huffman.pic.o ld-tmp/bz2-crctable.pic.o ld-tmp/bz2-randtable.pic.o ld-tmp/bz2-compress.pic.o ld-tmp/bz2-decompress.pic.o ld-tmp/bz2-bzlib.pic.o ld-tmp/z-adler32.pic.o ld-tmp/z-compress.pic.o ld-tmp/z-crc32.pic.o ld-tmp/z-deflate.pic.o ld-tmp/z-gzclose.pic.o ld-tmp/z-gzlib.pic.o ld-tmp/z-gzread.pic.o ld-tmp/z-gzwrite.pic.o ld-tmp/z-infback.pic.o ld-tmp/z-inffast.pic.o ld-tmp/z-inflate.pic.o ld-tmp/z-inftrees.pic.o ld-tmp/z-trees.pic.o ld-tmp/z-uncompr.pic.o ld-tmp/z-zutil.pic.o ld-tmp/ngs-jni-jni_Manager.pic.o ld-tmp/ngs-jni-jni_String.pic.o ld-tmp/ngs-jni-jni_ErrorMsg.pic.o ld-tmp/ngs-py-py_Manager.pic.o ld-tmp/ngs-NCBI-NGS.pic.o ld-tmp/ngs-CSRA1_PileupEvent.pic.o ld-tmp/ngs-CSRA1_Pileup.pic.o ld-tmp/ngs-CSRA1_Alignment.pic.o ld-tmp/ngs-CSRA1_ReferenceWindow.pic.o ld-tmp/ngs-CSRA1_Reference.pic.o ld-tmp/ngs-CSRA1_ReadCollection.pic.o ld-tmp/ngs-SRA_Statistics.pic.o ld-tmp/ngs-SRA_DB_ReadCollection.pic.o ld-tmp/ngs-SRA_Read.pic.o ld-tmp/ngs-SRA_ReadGroup.pic.o ld-tmp/ngs-SRA_ReadGroupInfo.pic.o ld-tmp/ngs-SRA_ReadCollection.pic.o ld-tmp/ngs-NGS_Statistics.pic.o ld-tmp/ngs-NGS_ReadCollection.pic.o ld-tmp/ngs-NGS_PileupEvent.pic.o ld-tmp/ngs-NGS_Pileup.pic.o ld-tmp/ngs-NGS_ReadGroup.pic.o ld-tmp/ngs-NGS_Alignment.pic.o ld-tmp/ngs-NGS_Reference.pic.o ld-tmp/ngs-NGS_Read.pic.o ld-tmp/ngs-NGS_Fragment.pic.o ld-tmp/ngs-NGS_Cursor.pic.o ld-tmp/ngs-NGS_Refcount.pic.o ld-tmp/ngs-NGS_String.pic.o ld-tmp/ngs-NGS_Id.pic.o ld-tmp/ngs-NGS_ErrBlock.pic.o | |
| ln -s libncbi-vdb.a.2.5.0 libncbi-vdb.a.2 | |
| ln -s libncbi-vdb.a.2 libncbi-vdb.a | |
| ln -s libncbi-vdb.a libncbi-vdb-static.a | |
| gcc -shared -o /bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/lib/libncbi-vdb.so.2.5.0 -Wl,-soname,libncbi-vdb.so.2 -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib -DNDEBUG -m64 -DNDEBUG -m64 -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/lib -L/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/ilib -Wl,-Bstatic -Wl,-whole-archive -lalign-reader -lascp -laxf -lsraxf -lwgsxf -lvxf -lsrareader -lsradb -lvdb-blast -lvdb -lkdb -lalign-access -lncbi-bam -lvfs -lkxml -lkxfs -lkns -lkfg -lkrypto -lksrch -lkfs -lklib -lkproc -lkq -lkfc -lbz2 -lz -lngs-jni -lngs-py -lngs -Wl,-no-whole-archive -Wl,-Bdynamic -ldl -lpthread -lxml2 -lm | |
| /usr/bin/ld: /bio/linuxbrew/lib/libbz2.a(blocksort.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC | |
| /bio/linuxbrew/lib/libbz2.a(blocksort.o): could not read symbols: Bad value | |
| collect2: error: ld returned 1 exit status | |
| make[3]: *** [/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/lib/libncbi-vdb.so] Error 1 | |
| make[3]: Leaving directory `/bio/linuxbrew/Cellar/sratoolkit/2.5.0/ncbi-vdb/linux/gcc/x86_64/rel/obj/libs/ncbi-vdb' | |
| make[2]: *** [std] Error 2 | |
| make[2]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs/ncbi-vdb' | |
| make[1]: *** [ncbi-vdb] Error 2 | |
| make[1]: Leaving directory `/tmp/sratoolkit--ncbi-vdb20150531-97164-1nk4dbs/ncbi-vdb-2.5.0/libs' | |
| make: *** [libs] Error 2 | |
| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/linuxbrew | |
| HEAD: 37f6ab9c5da46c9e97a1e298a0094f537ca71362 | |
| Last commit: 28 hours ago | |
| HOMEBREW_PREFIX: /bio/linuxbrew | |
| HOMEBREW_CELLAR: /bio/linuxbrew/Cellar | |
| CPU: 72-core 64-bit 6 | |
| OS X: 0-x86_64 | |
| Xcode: N/A | |
| CLT: N/A | |
| Clang: N/A | |
| X11: N/A | |
| System Ruby: 2.2.2 => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Perl: /usr/bin/perl | |
| Python: /bio/linuxbrew/bin/python => /bio/linuxbrew/Cellar/python/2.7.10/bin/python2.7 | |
| Ruby: /bio/linuxbrew/bin/ruby => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Java: 1.7.0_79 | |
| CC: /bio/linuxbrew/bin/gcc-4.8 => /usr/bin/gcc | |
| CXX: /bio/linuxbrew/bin/g++-4.8 => /usr/bin/g++ | |
| OBJC: /bio/linuxbrew/bin/gcc-4.8 | |
| OBJCXX: /bio/linuxbrew/bin/g++-4.8 | |
| HOMEBREW_CC: gcc-4.8 | |
| CFLAGS: -Os -w -pipe -march=core2 | |
| CXXFLAGS: -Os -w -pipe -march=core2 | |
| CPPFLAGS: -isystem/bio/linuxbrew/include | |
| LDFLAGS: -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib | |
| CMAKE_PREFIX_PATH: /bio/linuxbrew | |
| PKG_CONFIG_LIBDIR: /bio/linuxbrew/lib/pkgconfig | |
| PATH: /home/tseemann/perl5/bin:/bio/perl5/bin:/bio/linuxbrew/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bio/sw/hierBAPS:/bio/sw/brat:/bio/sw/mauve:/bio/sw/splitstree4:/bio/sw/vbc/fqa-tools:/bio/sw/vbc/misc:/bio/sw/MUMmer:/bio/sw/tablet:/bio/sw/nesoni/bin:/home/tseemann/git/snippy/bin:/home/tseemann/git/nullarbor/bin:/home/tseemann/git/prokka/bin:/home/tseemann/git/mlst/bin:/home/tseemann/git/abricate/bin:/home/tseemann/git/mdu-tools/bin:/home/tseemann/git/nullarbor/sbin:/usr/local/sbin:/usr/sbin:/home/tseemann/git/nullarbor/sbin:/home/tseemann/.local/bin:/home/tseemann/bin:/bio/linuxbrew/Library/ENV/scm |
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| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/linuxbrew | |
| HEAD: 37f6ab9c5da46c9e97a1e298a0094f537ca71362 | |
| Last commit: 28 hours ago | |
| HOMEBREW_PREFIX: /bio/linuxbrew | |
| HOMEBREW_CELLAR: /bio/linuxbrew/Cellar | |
| CPU: 72-core 64-bit 6 | |
| OS X: 0-x86_64 | |
| Xcode: N/A | |
| CLT: N/A | |
| Clang: N/A | |
| X11: N/A | |
| System Ruby: 2.2.2 => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Perl: /usr/bin/perl | |
| Python: /bio/linuxbrew/bin/python => /bio/linuxbrew/Cellar/python/2.7.10/bin/python2.7 | |
| Ruby: /bio/linuxbrew/bin/ruby => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Java: 1.7.0_79 |
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| Your system is ready to brew. |
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| Formula: sratoolkit | |
| Tap: homebrew/homebrew-science | |
| Path: /bio/linuxbrew/Library/Taps/homebrew/homebrew-science/sratoolkit.rb |
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