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February 20, 2016 03:35
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gubbins (homebrew/science/gubbins) on x86_64-linux - Homebrew build logs
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| Homebrew build logs for homebrew/science/gubbins on x86_64-linux | |
| Build date: 2016-02-20 14:28:49 |
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| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/linuxbrew | |
| HEAD: f51fa0898d0de64dc845ede36586d90fa2a00920 | |
| Last commit: 5 hours ago | |
| HOMEBREW_PREFIX: /bio/linuxbrew | |
| HOMEBREW_REPOSITORY: /bio/linuxbrew | |
| HOMEBREW_CELLAR: /bio/linuxbrew/Cellar | |
| HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com | |
| CPU: 72-core 64-bit haswell | |
| Kernel: Linux 3.10.0-327.4.5.el7.x86_64 x86_64 GNU/Linux | |
| OS: Red Hat Enterprise Linux Server release 7.2 (Maipo) | |
| Codename: Maipo | |
| OS glibc: 2.17 | |
| OS gcc: 4.8.5 | |
| Linuxbrew glibc: N/A | |
| Linuxbrew gcc: 5.3.0 | |
| Clang: N/A | |
| X11: 2.7.8 => /usr | |
| System Ruby: 2.2.2 => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Perl: /usr/bin/perl | |
| Python: /bio/linuxbrew/bin/python => /bio/linuxbrew/Cellar/python/2.7.11/bin/python2.7 | |
| Ruby: /bio/linuxbrew/bin/ruby => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Java: openjdk version "1.8.0_71" |
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| Your system is ready to brew. |
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| Formula: gubbins | |
| Tap: homebrew/science | |
| Path: /bio/linuxbrew/Library/Taps/homebrew/homebrew-science/gubbins.rb |
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| 2016-02-20 14:28:42 +1100 | |
| python3 | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| running build | |
| running build_py | |
| creating build | |
| creating build/lib | |
| creating build/lib/nose | |
| copying nose/__init__.py -> build/lib/nose | |
| copying nose/__main__.py -> build/lib/nose | |
| copying nose/case.py -> build/lib/nose | |
| copying nose/commands.py -> build/lib/nose | |
| copying nose/config.py -> build/lib/nose | |
| copying nose/core.py -> build/lib/nose | |
| copying nose/exc.py -> build/lib/nose | |
| copying nose/failure.py -> build/lib/nose | |
| copying nose/importer.py -> build/lib/nose | |
| copying nose/inspector.py -> build/lib/nose | |
| copying nose/loader.py -> build/lib/nose | |
| copying nose/proxy.py -> build/lib/nose | |
| copying nose/pyversion.py -> build/lib/nose | |
| copying nose/result.py -> build/lib/nose | |
| copying nose/selector.py -> build/lib/nose | |
| copying nose/suite.py -> build/lib/nose | |
| copying nose/twistedtools.py -> build/lib/nose | |
| copying nose/util.py -> build/lib/nose | |
| creating build/lib/nose/ext | |
| copying nose/ext/__init__.py -> build/lib/nose/ext | |
| copying nose/ext/dtcompat.py -> build/lib/nose/ext | |
| creating build/lib/nose/plugins | |
| copying nose/plugins/__init__.py -> build/lib/nose/plugins | |
| copying nose/plugins/allmodules.py -> build/lib/nose/plugins | |
| copying nose/plugins/attrib.py -> build/lib/nose/plugins | |
| copying nose/plugins/base.py -> build/lib/nose/plugins | |
| copying nose/plugins/builtin.py -> build/lib/nose/plugins | |
| copying nose/plugins/capture.py -> build/lib/nose/plugins | |
| copying nose/plugins/collect.py -> build/lib/nose/plugins | |
| copying nose/plugins/cover.py -> build/lib/nose/plugins | |
| copying nose/plugins/debug.py -> build/lib/nose/plugins | |
| copying nose/plugins/deprecated.py -> build/lib/nose/plugins | |
| copying nose/plugins/doctests.py -> build/lib/nose/plugins | |
| copying nose/plugins/errorclass.py -> build/lib/nose/plugins | |
| copying nose/plugins/failuredetail.py -> build/lib/nose/plugins | |
| copying nose/plugins/isolate.py -> build/lib/nose/plugins | |
| copying nose/plugins/logcapture.py -> build/lib/nose/plugins | |
| copying nose/plugins/manager.py -> build/lib/nose/plugins | |
| copying nose/plugins/multiprocess.py -> build/lib/nose/plugins | |
| copying nose/plugins/plugintest.py -> build/lib/nose/plugins | |
| copying nose/plugins/prof.py -> build/lib/nose/plugins | |
| copying nose/plugins/skip.py -> build/lib/nose/plugins | |
| copying nose/plugins/testid.py -> build/lib/nose/plugins | |
| copying nose/plugins/xunit.py -> build/lib/nose/plugins | |
| creating build/lib/nose/sphinx | |
| copying nose/sphinx/__init__.py -> build/lib/nose/sphinx | |
| copying nose/sphinx/pluginopts.py -> build/lib/nose/sphinx | |
| creating build/lib/nose/tools | |
| copying nose/tools/__init__.py -> build/lib/nose/tools | |
| copying nose/tools/nontrivial.py -> build/lib/nose/tools | |
| copying nose/tools/trivial.py -> build/lib/nose/tools | |
| copying nose/usage.txt -> build/lib/nose | |
| Fixing build/lib/nose/__init__.py build/lib/nose/__main__.py build/lib/nose/case.py build/lib/nose/commands.py build/lib/nose/config.py build/lib/nose/core.py build/lib/nose/exc.py build/lib/nose/failure.py build/lib/nose/importer.py build/lib/nose/inspector.py build/lib/nose/loader.py build/lib/nose/proxy.py build/lib/nose/pyversion.py build/lib/nose/result.py build/lib/nose/selector.py build/lib/nose/suite.py build/lib/nose/twistedtools.py build/lib/nose/util.py build/lib/nose/ext/__init__.py build/lib/nose/ext/dtcompat.py build/lib/nose/plugins/__init__.py build/lib/nose/plugins/allmodules.py build/lib/nose/plugins/attrib.py build/lib/nose/plugins/base.py build/lib/nose/plugins/builtin.py build/lib/nose/plugins/capture.py build/lib/nose/plugins/collect.py build/lib/nose/plugins/cover.py build/lib/nose/plugins/debug.py build/lib/nose/plugins/deprecated.py build/lib/nose/plugins/doctests.py build/lib/nose/plugins/errorclass.py build/lib/nose/plugins/failuredetail.py build/lib/nose/plugins/isolate.py build/lib/nose/plugins/logcapture.py build/lib/nose/plugins/manager.py build/lib/nose/plugins/multiprocess.py build/lib/nose/plugins/plugintest.py build/lib/nose/plugins/prof.py build/lib/nose/plugins/skip.py build/lib/nose/plugins/testid.py build/lib/nose/plugins/xunit.py build/lib/nose/sphinx/__init__.py build/lib/nose/sphinx/pluginopts.py build/lib/nose/tools/__init__.py build/lib/nose/tools/nontrivial.py build/lib/nose/tools/trivial.py | |
| Skipping implicit fixer: buffer | |
| Skipping implicit fixer: idioms | |
| Skipping implicit fixer: set_literal | |
| Skipping implicit fixer: ws_comma | |
| Fixing build/lib/nose/__init__.py build/lib/nose/__main__.py build/lib/nose/case.py build/lib/nose/commands.py build/lib/nose/config.py build/lib/nose/core.py build/lib/nose/exc.py build/lib/nose/failure.py build/lib/nose/importer.py build/lib/nose/inspector.py build/lib/nose/loader.py build/lib/nose/proxy.py build/lib/nose/pyversion.py build/lib/nose/result.py build/lib/nose/selector.py build/lib/nose/suite.py build/lib/nose/twistedtools.py build/lib/nose/util.py build/lib/nose/ext/__init__.py build/lib/nose/ext/dtcompat.py build/lib/nose/plugins/__init__.py build/lib/nose/plugins/allmodules.py build/lib/nose/plugins/attrib.py build/lib/nose/plugins/base.py build/lib/nose/plugins/builtin.py build/lib/nose/plugins/capture.py build/lib/nose/plugins/collect.py build/lib/nose/plugins/cover.py build/lib/nose/plugins/debug.py build/lib/nose/plugins/deprecated.py build/lib/nose/plugins/doctests.py build/lib/nose/plugins/errorclass.py build/lib/nose/plugins/failuredetail.py build/lib/nose/plugins/isolate.py build/lib/nose/plugins/logcapture.py build/lib/nose/plugins/manager.py build/lib/nose/plugins/multiprocess.py build/lib/nose/plugins/plugintest.py build/lib/nose/plugins/prof.py build/lib/nose/plugins/skip.py build/lib/nose/plugins/testid.py build/lib/nose/plugins/xunit.py build/lib/nose/sphinx/__init__.py build/lib/nose/sphinx/pluginopts.py build/lib/nose/tools/__init__.py build/lib/nose/tools/nontrivial.py build/lib/nose/tools/trivial.py | |
| Skipping implicit fixer: buffer | |
| Skipping implicit fixer: idioms | |
| Skipping implicit fixer: set_literal | |
| Skipping implicit fixer: ws_comma | |
| running install_lib | |
| creating /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/__init__.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/__main__.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/case.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/commands.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/config.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/core.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/exc.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/failure.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/importer.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/inspector.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/loader.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/proxy.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/pyversion.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/result.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/selector.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/suite.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/twistedtools.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| copying build/lib/nose/util.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| creating /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/ext | |
| copying build/lib/nose/ext/__init__.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/ext | |
| copying build/lib/nose/ext/dtcompat.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/ext | |
| creating /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/__init__.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/allmodules.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/attrib.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/base.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/builtin.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/capture.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/collect.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/cover.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/debug.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/deprecated.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/doctests.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/errorclass.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/failuredetail.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/isolate.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/logcapture.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/manager.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/multiprocess.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/plugintest.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/prof.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/skip.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/testid.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| copying build/lib/nose/plugins/xunit.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins | |
| creating /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/sphinx | |
| copying build/lib/nose/sphinx/__init__.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/sphinx | |
| copying build/lib/nose/sphinx/pluginopts.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/sphinx | |
| creating /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/tools | |
| copying build/lib/nose/tools/__init__.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/tools | |
| copying build/lib/nose/tools/nontrivial.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/tools | |
| copying build/lib/nose/tools/trivial.py -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/tools | |
| copying build/lib/nose/usage.txt -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/__init__.py to __init__.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/__main__.py to __main__.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/case.py to case.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/commands.py to commands.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/config.py to config.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/core.py to core.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/exc.py to exc.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/failure.py to failure.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/importer.py to importer.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/inspector.py to inspector.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/loader.py to loader.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/proxy.py to proxy.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/pyversion.py to pyversion.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/result.py to result.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/selector.py to selector.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/suite.py to suite.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/twistedtools.py to twistedtools.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/util.py to util.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/ext/__init__.py to __init__.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/ext/dtcompat.py to dtcompat.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/__init__.py to __init__.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/allmodules.py to allmodules.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/attrib.py to attrib.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/base.py to base.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/builtin.py to builtin.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/capture.py to capture.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/collect.py to collect.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/cover.py to cover.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/debug.py to debug.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/deprecated.py to deprecated.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/doctests.py to doctests.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/errorclass.py to errorclass.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/failuredetail.py to failuredetail.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/isolate.py to isolate.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/logcapture.py to logcapture.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/manager.py to manager.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/multiprocess.py to multiprocess.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/plugintest.py to plugintest.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/prof.py to prof.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/skip.py to skip.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/testid.py to testid.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/plugins/xunit.py to xunit.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/sphinx/__init__.py to __init__.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/sphinx/pluginopts.py to pluginopts.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/tools/__init__.py to __init__.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/tools/nontrivial.py to nontrivial.cpython-34.pyc | |
| byte-compiling /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose/tools/trivial.py to trivial.cpython-34.pyc | |
| running install_data | |
| creating /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/man | |
| creating /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/man/man1 | |
| copying nosetests.1 -> /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/man/man1 | |
| running install_egg_info | |
| running egg_info | |
| writing top-level names to nose.egg-info/top_level.txt | |
| writing entry points to nose.egg-info/entry_points.txt | |
| writing dependency_links to nose.egg-info/dependency_links.txt | |
| writing nose.egg-info/PKG-INFO | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'nose.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| no previously-included directories found matching 'doc/.build' | |
| writing manifest file 'nose.egg-info/SOURCES.txt' | |
| Copying nose.egg-info to /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/lib/python3.4/site-packages/nose-1.3.7-py3.4.egg-info | |
| running install_scripts | |
| Installing nosetests script to /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/bin | |
| Installing nosetests-3.4 script to /bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor/bin | |
| writing list of installed files to 'installed.txt' |
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| 2016-02-20 14:28:49 +1100 | |
| python3 | |
| -c | |
| import setuptools, tokenize | |
| __file__ = 'setup.py' | |
| exec(compile(getattr(tokenize, 'open', open)(__file__).read() | |
| .replace('\r\n', '\n'), __file__, 'exec')) | |
| --no-user-cfg | |
| install | |
| --prefix=/bio/linuxbrew/Cellar/gubbins/1.4.5_1/libexec/vendor | |
| --single-version-externally-managed | |
| --record=installed.txt | |
| running install | |
| Numerical Python (NumPy) is not installed. | |
| This package is required for many Biopython features. Please install | |
| it before you install Biopython. You can install Biopython anyway, but | |
| anything dependent on NumPy will not work. If you do this, and later | |
| install NumPy, you should then re-install Biopython. | |
| You can find NumPy at http://www.numpy.org | |
| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/linuxbrew | |
| HEAD: f51fa0898d0de64dc845ede36586d90fa2a00920 | |
| Last commit: 4 hours ago | |
| HOMEBREW_PREFIX: /bio/linuxbrew | |
| HOMEBREW_REPOSITORY: /bio/linuxbrew | |
| HOMEBREW_CELLAR: /bio/linuxbrew/Cellar | |
| HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com | |
| CPU: 72-core 64-bit haswell | |
| Kernel: Linux 3.10.0-327.4.5.el7.x86_64 x86_64 GNU/Linux | |
| OS: Red Hat Enterprise Linux Server release 7.2 (Maipo) | |
| Codename: Maipo | |
| OS glibc: 2.17 | |
| OS gcc: 4.8.5 | |
| Linuxbrew glibc: N/A | |
| Linuxbrew gcc: 5.3.0 | |
| Clang: N/A | |
| X11: 2.7.8 => /usr | |
| System Ruby: 2.2.2 => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Perl: /usr/bin/perl | |
| Python: /bio/linuxbrew/bin/python => /bio/linuxbrew/Cellar/python/2.7.11/bin/python2.7 | |
| Ruby: /bio/linuxbrew/bin/ruby => /bio/linuxbrew/Cellar/ruby/2.2.2/bin/ruby | |
| Java: openjdk version "1.8.0_71" | |
| CC: /bio/linuxbrew/bin/gcc-5 => /bio/linuxbrew/Cellar/gcc/5.3.0/bin/gcc-5 | |
| CXX: /bio/linuxbrew/bin/g++-5 => /bio/linuxbrew/Cellar/gcc/5.3.0/bin/g++-5 | |
| OBJC: /bio/linuxbrew/bin/gcc-5 | |
| OBJCXX: /bio/linuxbrew/bin/g++-5 | |
| CFLAGS: -Os -w -pipe -march=core2 | |
| CXXFLAGS: -Os -w -pipe -march=core2 | |
| CPPFLAGS: -isystem/bio/linuxbrew/include | |
| LDFLAGS: -L/bio/linuxbrew/lib -Wl,-rpath,/bio/linuxbrew/lib | |
| MAKEFLAGS: -j72 | |
| CMAKE_PREFIX_PATH: /bio/linuxbrew | |
| PKG_CONFIG_LIBDIR: /bio/linuxbrew/lib/pkgconfig:/bio/linuxbrew/share/pkgconfig | |
| HOMEBREW_BUILD_FROM_SOURCE: 1 | |
| PATH: /bio/linuxbrew/bin:/home/tseemann/perl5/bin:/bio/perl5/bin:/bio/linuxbrew/bin:/bio/linuxbrew/sbin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bio/sw/hierBAPS:/bio/sw/brat:/bio/sw/mauve:/bio/sw/splitstree4:/bio/sw/vbc/fqa-tools:/bio/sw/vbc/misc:/bio/sw/MUMmer:/bio/sw/tablet:/home/tseemann/git/wombac/bin:/home/tseemann/git/snippy/bin:/home/tseemann/git/barrnap/bin:/home/tseemann/git/nullarbor/bin:/home/tseemann/git/prokka/bin:/home/tseemann/git/mlst/bin:/home/tseemann/git/abricate/bin:/home/tseemann/git/mdu-tools/bin:/usr/local/sbin:/usr/sbin:/home/tseemann/.local/bin:/home/tseemann/bin:/bio/linuxbrew/Library/ENV/scm:/bio/linuxbrew/opt/python3/bin |
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