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output.json
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Raw
output.txt
tutorials/narratives-how-to-write.md:52: [broken] ../guides/communicate/narratives-intro.html#known-bugs-limitations:
tutorials/narratives-how-to-write.md:130: [broken] ../guides/communicate/narratives-intro.html#sharing-narratives:
guides/communicate/narratives-intro.md:62: [broken] ../../tutorials/narratives-how-to-write.md#step-6-upload-your-example-to-nextstrain-community-to-share-with-everyone:
guides/communicate/create-pdf.md:61: [broken] http://localhost:4000: HTTPConnectionPool(host='localhost', port=4000): Max retries exceeded with url: / (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f989263ffd0>: Failed to establish a new connection: [Errno 111] Connection refused'))
tutorials/narratives-how-to-write.md:74: [broken] http://localhost:4000/mumps/na: HTTPConnectionPool(host='localhost', port=4000): Max retries exceeded with url: /mumps/na (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f98924359f0>: Failed to establish a new connection: [Errno 111] Connection refused'))
tutorials/creating-a-workflow.rst:262: [broken] http://127.0.0.1:4000/zika: HTTPConnectionPool(host='127.0.0.1', port=4000): Max retries exceeded with url: /zika (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f9892605c60>: Failed to establish a new connection: [Errno 111] Connection refused'))
tutorials/narratives-how-to-write.md:74: [broken] http://localhost:4000/mumps/na?d=map: HTTPConnectionPool(host='localhost', port=4000): Max retries exceeded with url: /mumps/na?d=map (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f98924355a0>: Failed to establish a new connection: [Errno 111] Connection refused'))
guides/communicate/create-pdf.md:61: [broken] http://localhost:4000/narratives/example: HTTPConnectionPool(host='localhost', port=4000): Max retries exceeded with url: /narratives/example (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f98927a64d0>: Failed to establish a new connection: [Errno 111] Connection refused'))
tutorials/creating-a-workflow.rst:159: [redirected with Found] http://evolution.genetics.washington.edu/phylip/newicktree.html to https://evolution.genetics.washington.edu/phylip/newicktree.html
guides/bioinformatics/colors.md:23: [broken] http://colorbrewer2.org/#type=sequential&scheme=BuGn&n=3: Anchor 'type=sequential&scheme=BuGn&n=3' not found
guides/bioinformatics/examples.rst:19: [redirected with Found] http://snakemake.readthedocs.io to https://snakemake.readthedocs.io/en/stable/
guides/share/groups/migrate-from-s3.rst:201: [broken] https://discussions.nextstrain.org: HTTPSConnectionPool(host='discussions.nextstrain.org', port=443): Max retries exceeded with url: / (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f98927a5660>: Failed to establish a new connection: [Errno -2] Name or service not known'))
reference/faq.rst:20: [redirected permanently] https://docker.com/ to https://www.docker.com/
reference/faq.rst:30: [redirected permanently] https://docs.microsoft.com/en-us/windows/wsl/about to https://learn.microsoft.com/en-us/windows/wsl/about
reference/faq.rst:64: [redirected permanently] https://docs.microsoft.com/en-us/powershell/scripting/discover-powershell to https://learn.microsoft.com/en-us/powershell/scripting/discover-powershell?view=powershell-7.3
install.rst:57: [redirected permanently] https://docs.microsoft.com/en-us/windows/wsl/install to https://learn.microsoft.com/en-us/windows/wsl/install
guides/communicate/create-pdf.md:20: [redirected with Found] https://docs.nextstrain.org/projects/auspice/page/introduction/install.html to https://docs.nextstrain.org/projects/auspice/en/stable/introduction/install.html
guides/communicate/narratives-intro.md:63: [broken] https://docs.nextstrain.org/projects/auspice/en/stable/server/index.html: 404 Client Error: Not Found for url: https://docs.nextstrain.org/projects/auspice/en/stable/server/index.html
guides/bioinformatics/examples.rst:5: [redirected with Found] https://github.com/nextstrain/augur/issues/new?title=Augur%20in%20the%20wild to https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fnextstrain%2Faugur%2Fissues%2Fnew%3Ftitle%3DAugur%2520in%2520the%2520wild
guides/contribute/index.rst:13: [redirected permanently] https://github.com/nextstrain/augur/tree/master/docs/contribute/DEV_DOCS.md#readme to https://github.com/nextstrain/augur/blob/master/docs/contribute/DEV_DOCS.md#readme
guides/communicate/narratives-intro.md:69: [redirected with Found] https://github.com/nextstrain/auspice/issues/new to https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fnextstrain%2Fauspice%2Fissues%2Fnew
guides/contribute/index.rst:14: [redirected permanently] https://github.com/nextstrain/auspice/tree/master/DEV_DOCS.md#readme to https://github.com/nextstrain/auspice/blob/master/DEV_DOCS.md#readme
guides/contribute/index.rst:15: [redirected permanently] https://github.com/nextstrain/cli/tree/master/doc/development.md#readme to https://github.com/nextstrain/cli/blob/master/doc/development.md#readme
reference/data-formats.rst:63: [broken] https://github.com/nextstrain/ncov/blob/cee806f/workflow/snakemake_rules/main_workflow.smk#L1127-L1143: Anchor 'L1127-L1143' not found
guides/share/sars-cov-2.md:8: [redirected with Found] https://github.com/nextstrain/nextstrain.org/issues/new/choose to https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fnextstrain%2Fnextstrain.org%2Fissues%2Fnew%2Fchoose
tutorials/narratives-how-to-write.md:139: [redirected with Found] https://guides.github.com/activities/hello-world/ to https://docs.github.com/en/get-started/quickstart/hello-world
guides/bioinformatics/translate_ref.md:33: [redirected with Found] https://github.com/nextstrain/zika/blob/master/config/zika_reference.gb to https://github.com/nextstrain/zika/blob/main/config/zika_reference.gb
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guides/bioinformatics/examples.rst:29: [redirected temporarily] https://nextstrain.org/mumps to https://nextstrain.org/mumps/na
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guides/share/index.rst:43: [redirected temporarily] https://nextstrain.org/ncov/global to https://nextstrain.org/ncov/gisaid/global/6m
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learn/parts.rst:168: [redirected with Found] https://snakemake.readthedocs.io to https://snakemake.readthedocs.io/en/stable/
learn/interpret/interacting-with-nextstrain.md:3: [redirected permanently] https://www.github.com/nextstrain/auspice to https://github.com/nextstrain/auspice
learn/interpret/interacting-with-nextstrain.md:15: [redirected with Found] https://www.nextstrain.org/mumps/na to https://nextstrain.org/mumps/na
reference/governance.rst:72: [redirected with Found] https://wiki.nextstrain.org/t/code+review to https://nextstrain.atlassian.net/wiki/spaces/NEXTSTRAIN/pages/138215425/Code+review
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