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| docker_only conda_only both | |
| 2to3 | |
| 2to3-3.10 | |
| acountry | |
| acyclic | |
| adig | |
| aggregate_scores_in_intervals.py | |
| ahost | |
| align_print_template.py | |
| animate | |
| annotate | |
| assign_lineage.py | |
| assign_query_file.smk | |
| assign_query_lineage.smk | |
| augur | |
| auspice | |
| autopoint | |
| aws | |
| aws_bash_completer | |
| aws.cmd | |
| aws_completer | |
| aws_zsh_completer.sh | |
| axt_extract_ranges.py | |
| axt_to_fasta.py | |
| axt_to_lav.py | |
| axt_to_maf.py | |
| bash | |
| bashbug | |
| bcomps | |
| bdftogd | |
| bed_bigwig_profile.py | |
| bed_build_windows.py | |
| bed_complement.py | |
| bed_count_by_interval.py | |
| bed_count_overlapping.py | |
| bed_coverage_by_interval.py | |
| bed_coverage.py | |
| bed_diff_basewise_summary.py | |
| bed_extend_to.py | |
| bed_intersect_basewise.py | |
| bed_intersect.py | |
| bed_merge_overlapping.py | |
| bed_rand_intersect.py | |
| bed_subtract_basewise.py | |
| bin | |
| bnMapper.py | |
| brotli | |
| bundle | |
| bundler | |
| bunzip2 | |
| bzcat | |
| bzcmp | |
| bzdiff | |
| bzegrep | |
| bzexe | |
| bzfgrep | |
| bzgrep | |
| bzip2 | |
| bzip2recover | |
| bzless | |
| bzmore | |
| cairo-trace | |
| captoinfo | |
| categorise_snps.py | |
| ccomps | |
| circo | |
| cjpeg | |
| clear | |
| cluster | |
| cmpfillin | |
| compare | |
| compile_et | |
| compose | |
| composite | |
| conjure | |
| convert | |
| corelist | |
| corepack | |
| cpan | |
| cpan5.28-x86_64-linux-gnu | |
| c_rehash | |
| csv2tsv | |
| csvtk | |
| curl | |
| curl-config | |
| cwebp | |
| delaunay | |
| dendropy-format | |
| derb | |
| diffimg | |
| dijkstra | |
| dirmngr | |
| dirmngr-client | |
| display | |
| div_snp_table_chr.py | |
| djpeg | |
| dot | |
| dot2gxl | |
| dot_builtins | |
| dsdp5 | |
| dvipdf | |
| dwebp | |
| edgepaint | |
| edit | |
| einsi | |
| enc2xs | |
| encguess | |
| envdir | |
| envsubst | |
| eps2eps | |
| erb | |
| erb2.5 | |
| f2py | |
| f2py3 | |
| f2py3.10 | |
| fasttree | |
| FastTree | |
| FastTreeDblMP | |
| FastTreeMP | |
| fax2ps | |
| fax2tiff | |
| fc-cache | |
| fc-cat | |
| fc-conflist | |
| fc-list | |
| fc-match | |
| fc-pattern | |
| fc-query | |
| fc-scan | |
| fc-validate | |
| fdp | |
| fftns | |
| fftnsi | |
| fftwf-wisdom | |
| fftwl-wisdom | |
| fftw-wisdom | |
| fftw-wisdom-to-conf | |
| file | |
| fill-aa | |
| fill-an-ac | |
| fill-fs | |
| fill-ref-md5 | |
| find_all_snps.py | |
| find_in_sorted_file.py | |
| fonttools | |
| freetype-config | |
| fribidi | |
| funzip | |
| gc | |
| gd2copypal | |
| gd2togif | |
| gd2topng | |
| gdbm_dump | |
| gdbm_load | |
| gdbmtool | |
| gdcmpgif | |
| gdk-pixbuf-csource | |
| gdk-pixbuf-pixdata | |
| .gdk-pixbuf-post-link.sh | |
| gdk-pixbuf-query-loaders | |
| gdk-pixbuf-thumbnailer | |
| gdparttopng | |
| gdtopng | |
| gem | |
| gem2.5 | |
| genbrk | |
| gencfu | |
| gencnval | |
| gendict | |
| gene_fourfold_sites.py | |
| genrb | |
| get_masked_representatives.py | |
| get_scores_in_intervals.py | |
| gettext | |
| gettextize | |
| gettext.sh | |
| gif2rgb | |
| gif2webp | |
| gifbuild | |
| gifclrmp | |
| giffix | |
| giftext | |
| giftogd2 | |
| giftool | |
| ginsi | |
| git | |
| git-cvsserver | |
| gitk | |
| git-receive-pack | |
| git-shell | |
| git-upload-archive | |
| git-upload-pack | |
| glpsol | |
| gml2gv | |
| gofasta | |
| gpg | |
| gpg-agent | |
| gpgcompose | |
| gpgconf | |
| gpg-connect-agent | |
| gpgparsemail | |
| gpgsm | |
| gpgsplit | |
| gpgtar | |
| gpg-wks-server | |
| gpg-zip | |
| gpmetis | |
| graphchk | |
| graphml2gv | |
| .graphviz-post-link.sh | |
| grpc_cpp_plugin | |
| grpc_csharp_plugin | |
| grpc_node_plugin | |
| grpc_objective_c_plugin | |
| grpc_php_plugin | |
| grpc_python_plugin | |
| grpc_ruby_plugin | |
| gs | |
| gsbj | |
| gsdj | |
| gsdj500 | |
| gsl-config | |
| gsl-histogram | |
| gslj | |
| gslp | |
| gsl-randist | |
| gsnd | |
| gss-client | |
| gtk-builder-convert | |
| gtk-demo | |
| gtk-query-immodules-2.0 | |
| gtk-update-icon-cache | |
| gts2dxf | |
| gts2oogl | |
| gts2stl | |
| gtscheck | |
| gtscompare | |
| gts-config | |
| gtstemplate | |
| gunzip | |
| gv2gml | |
| gv2gxl | |
| gvcolor | |
| gvgen | |
| gvmap | |
| gvmap.sh | |
| gvpack | |
| gvpr | |
| gxl2dot | |
| gxl2gv | |
| gzexe | |
| gzip | |
| h2load | |
| h2ph | |
| h2xs | |
| hb-ot-shape-closure | |
| hb-shape | |
| hb-subset | |
| hb-view | |
| iconv | |
| icu-config | |
| icuexportdata | |
| icuinfo | |
| identify | |
| idle3 | |
| idle3.10 | |
| idn2 | |
| igzip | |
| img2webp | |
| import | |
| infocmp | |
| infotocap | |
| instmodsh | |
| interval_count_intersections.py | |
| interval_join.py | |
| int_seqs_to_char_strings.py | |
| iqtree | |
| irb | |
| irb2.5 | |
| jpegtran | |
| jpgicc | |
| jp.py | |
| jq | |
| json_pp | |
| jsonschema | |
| jupyter | |
| jupyter-migrate | |
| jupyter-troubleshoot | |
| jupyter-trust | |
| k5srvutil | |
| kadmin | |
| kbxutil | |
| kdestroy | |
| keep-header | |
| keyctl | |
| kinit | |
| klist | |
| kpasswd | |
| krb5-config | |
| kswitch | |
| ktutil | |
| kvno | |
| lav_to_axt.py | |
| lav_to_maf.py | |
| less | |
| less | |
| lessecho | |
| lessecho | |
| lessfile | |
| lessfile | |
| lesskey | |
| lesskey | |
| lesspipe | |
| lesspipe | |
| libdeflate-gunzip | |
| libdeflate-gzip | |
| libnetcfg | |
| libpng16-config | |
| libpng-config | |
| .librsvg-post-link.sh | |
| .librsvg-pre-unlink.sh | |
| libtool | |
| libtoolize | |
| lineage_finder.py | |
| lineages | |
| line_select.py | |
| linkicc | |
| linsi | |
| lprsetup.sh | |
| lsb_release | |
| lspgpot | |
| lzcat | |
| lzcmp | |
| lzdiff | |
| lzegrep | |
| lzfgrep | |
| lzgrep | |
| lzless | |
| lzma | |
| lzmadec | |
| lzmainfo | |
| lzmore | |
| lzop_build_offset_table.py | |
| m2gmetis | |
| maf_build_index.py | |
| maf_chop.py | |
| maf_chunk.py | |
| maf_col_counts_all.py | |
| maf_col_counts.py | |
| maf_count.py | |
| maf_covered_ranges.py | |
| maf_covered_regions.py | |
| maf_div_sites.py | |
| maf_drop_overlapping.py | |
| maf_extract_chrom_ranges.py | |
| maf_extract_ranges_indexed.py | |
| maf_extract_ranges.py | |
| maf_filter_max_wc.py | |
| maf_filter.py | |
| mafft | |
| mafft-distance | |
| mafft-einsi | |
| mafft-fftns | |
| mafft-fftnsi | |
| mafft-ginsi | |
| mafft-homologs.rb | |
| mafft-linsi | |
| mafft-nwns | |
| mafft-nwnsi | |
| mafft-profile | |
| mafft-qinsi | |
| mafft-sparsecore.rb | |
| mafft-xinsi | |
| maf_gap_frequency.py | |
| maf_gc_content.py | |
| maf_interval_alignibility.py | |
| maf_limit_to_species.py | |
| maf_mapping_word_frequency.py | |
| maf_mask_cpg.py | |
| maf_mean_length_ungapped_piece.py | |
| maf_percent_columns_matching.py | |
| maf_percent_identity.py | |
| maf_print_chroms.py | |
| maf_print_scores.py | |
| maf_randomize.py | |
| maf_region_coverage_by_src.py | |
| maf_select.py | |
| maf_shuffle_columns.py | |
| maf_species_in_all_files.py | |
| maf_split_by_src.py | |
| maf_thread_for_species.py | |
| maf_tile_2bit.py | |
| maf_tile_2.py | |
| maf_tile.py | |
| maf_to_axt.py | |
| maf_to_concat_fasta.py | |
| maf_to_fasta.py | |
| maf_to_int_seqs.py | |
| maf_translate_chars.py | |
| maf_truncate.py | |
| maf_word_frequency.py | |
| magick | |
| Magick++-config | |
| MagickCore-config | |
| magick-script | |
| MagickWand-config | |
| makeconv | |
| mask_quality.py | |
| migrate-pubring-from-classic-gpg | |
| minimap2 | |
| mm2gv | |
| mMK_bitset.py | |
| mogrify | |
| montage | |
| mpmetis | |
| msgattrib | |
| msgcat | |
| msgcmp | |
| msgcomm | |
| msgconv | |
| msgen | |
| msgexec | |
| msgfilter | |
| msgfmt | |
| msggrep | |
| msginit | |
| msgmerge | |
| msgunfmt | |
| msguniq | |
| ncurses6-config | |
| ncursesw6-config | |
| ndmetis | |
| neato | |
| nextalign | |
| nextalign1 | |
| nextalign2 | |
| nextclade | |
| nextclade1 | |
| nextclade2 | |
| .nextclade-post-link.sh | |
| nextstrain | |
| ngettext | |
| nghttp | |
| nghttpd | |
| nghttpx | |
| nib_chrom_intervals_to_fasta.py | |
| nib_intervals_to_fasta.py | |
| nib_length.py | |
| node | |
| nop | |
| normalizer | |
| npm | |
| npx | |
| number-lines | |
| nwns | |
| nwnsi | |
| one_field_per_line.py | |
| onig-config | |
| openssl | |
| opj_compress | |
| opj_decompress | |
| opj_dump | |
| osage | |
| out_to_chain.py | |
| pal2rgb | |
| pangoLEARN | |
| pangolearn.smk | |
| pangolin | |
| pango-list | |
| pango-segmentation | |
| pango-view | |
| patchwork | |
| pbunzip2 | |
| pbzcat | |
| pbzip2 | |
| pcre2-config | |
| pcre2grep | |
| pcre2_jit_test | |
| pcre2test | |
| pdb3 | |
| pdb3.7 | |
| pdf2dsc | |
| pdf2ps | |
| perl | |
| perl5.28-x86_64-linux-gnu | |
| perl5.32.1 | |
| perlbug | |
| perldoc | |
| perlivp | |
| perlthanks | |
| pf2afm | |
| pfbtopfa | |
| piconv | |
| pigz | |
| pinentry | |
| pinentry-curses | |
| pip | |
| pip3 | |
| pkg-config | |
| pkg-config.bin | |
| pkgdata | |
| pl2pm | |
| pngfix | |
| png-fix-itxt | |
| pngtogd | |
| pngtogd2 | |
| pod2html | |
| pod2man | |
| pod2text | |
| pod2usage | |
| podchecker | |
| podselect | |
| pphs | |
| ppm2tiff | |
| prefix_lines.py | |
| prepare_package_data.smk | |
| pretty_table.py | |
| printafm | |
| protoc | |
| prove | |
| prune | |
| ps2ascii | |
| ps2epsi | |
| ps2pdf | |
| ps2pdf12 | |
| ps2pdf13 | |
| ps2pdf14 | |
| ps2pdfwr | |
| ps2ps | |
| ps2ps2 | |
| psicc | |
| ptar | |
| ptardiff | |
| ptargrep | |
| py3clean | |
| py3compile | |
| py3versions | |
| pydoc | |
| pydoc3 | |
| pydoc3.10 | |
| pydoc3.7 | |
| pyftmerge | |
| pyftsubset | |
| pygettext3 | |
| pygettext3.7 | |
| pygmentize | |
| pyrsa-decrypt | |
| pyrsa-encrypt | |
| pyrsa-keygen | |
| pyrsa-priv2pub | |
| pyrsa-sign | |
| pyrsa-verify | |
| python | |
| python3 | |
| python3.1 | |
| python3.10 | |
| python3.10-config | |
| python3.7 | |
| python3.7m | |
| python3-config | |
| python3m | |
| pzstd | |
| qv_to_bqv.py | |
| racc | |
| rake | |
| random_lines.py | |
| raw2tiff | |
| raxmlHPC | |
| raxmlHPC-AVX2 | |
| raxmlHPC-PTHREADS | |
| raxmlHPC-PTHREADS-AVX | |
| raxmlHPC-PTHREADS-AVX2 | |
| raxmlHPC-PTHREADS-SSE3 | |
| raxmlHPC-SSE3 | |
| rbs | |
| rdbg | |
| rdjpgcom | |
| rdoc | |
| rdoc2.5 | |
| recode-sr-latin | |
| report_classes.py | |
| report_results.py | |
| reset | |
| ri | |
| ri2.5 | |
| rst2html4.py | |
| rst2html5.py | |
| rst2html.py | |
| rst2latex.py | |
| rst2man.py | |
| rst2odt_prepstyles.py | |
| rst2odt.py | |
| rst2pseudoxml.py | |
| rst2s5.py | |
| rst2xetex.py | |
| rst2xml.py | |
| rstpep2html.py | |
| rsvg-convert | |
| ruby | |
| ruby2.5 | |
| run-mailcap | |
| sam_2_snps.py | |
| scalar | |
| sccmap | |
| sclient | |
| scorpio | |
| see | |
| seqkit | |
| sfdp | |
| shasum | |
| sim_client | |
| Snakefile | |
| snakemake | |
| snakemake-bash-completion | |
| snp_based_classifier.py | |
| snp_based_classify.smk | |
| splain | |
| sqlite3_analyzer | |
| stl2gts | |
| stone | |
| stream | |
| streamzip | |
| sumlabels.py | |
| sumtrees.py | |
| symcryptrun | |
| table_add_column.py | |
| table_filter.py | |
| tabs | |
| tclsh | |
| tclsh8.6 | |
| tfloc_summary.py | |
| tic | |
| tiff2bw | |
| tiff2pdf | |
| tiff2ps | |
| tiff2rgba | |
| tiffcmp | |
| tiffcp | |
| tiffcrop | |
| tiffdither | |
| tiffdump | |
| tiffinfo | |
| tiffmedian | |
| tiffset | |
| tiffsplit | |
| tificc | |
| toe | |
| tput | |
| transform | |
| transicc | |
| tred | |
| treetime | |
| tset | |
| tsv-append | |
| tsv-filter | |
| tsv-join | |
| tsv-pretty | |
| tsv-sample | |
| tsv-select | |
| tsv-split | |
| tsv-summarize | |
| tsv-uniq | |
| ttx | |
| twopi | |
| typeprof | |
| ucsc_gene_table_to_intervals.py | |
| uncompress | |
| unflatten | |
| unix-lpr.sh | |
| unlzma | |
| unpigz | |
| unxz | |
| unzip | |
| unzipsfx | |
| unzstd | |
| utils.py | |
| uuclient | |
| vcf-annotate | |
| vcf-compare | |
| vcf-concat | |
| vcf-consensus | |
| vcf-contrast | |
| vcf-convert | |
| vcf-fix-newlines | |
| vcf-fix-ploidy | |
| vcf-indel-stats | |
| vcf-isec | |
| vcf-merge | |
| vcf-phased-join | |
| vcf-query | |
| vcf-shuffle-cols | |
| vcf-sort | |
| vcf-stats | |
| vcf-subset | |
| vcftools | |
| vcf-to-tab | |
| vcf-tstv | |
| vcf-validator | |
| watchgnupg | |
| webpinfo | |
| webpmux | |
| webpng | |
| wget | |
| wheel | |
| wiggle_to_array_tree.py | |
| wiggle_to_binned_array.py | |
| wiggle_to_chr_binned_array.py | |
| wiggle_to_simple.py | |
| wish | |
| wish8.6 | |
| wrjpgcom | |
| x86_64-conda_cos6-linux-gnu-ld | |
| x86_64-conda-linux-gnu-ld | |
| x86_64-conda-linux-gnu-pkg-config | |
| xgettext | |
| xml2-config | |
| xmlcatalog | |
| xmllint | |
| xmlwf | |
| xsubpp | |
| xz | |
| xzcat | |
| xzcmp | |
| xzdec | |
| xzdiff | |
| xzegrep | |
| xzfgrep | |
| xzgrep | |
| xzless | |
| xzmore | |
| zcat | |
| zcmp | |
| zdiff | |
| zegrep | |
| zfgrep | |
| zforce | |
| zgrep | |
| zip | |
| zipcloak | |
| zipdetails | |
| zipgrep | |
| zipinfo | |
| zipnote | |
| zipsplit | |
| zmore | |
| znew | |
| zstd | |
| zstdcat | |
| zstdgrep | |
| zstdless | |
| zstdmt |
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