.profile

# environment variables
export PATH=/usr/local/mysql/bin:$PATH
export LC_ALL=en_US.UTF-8     # not existent on OSX, required for quartus
export LANG=en_US.UTF-8       # not existent on OSX, required for quartus
export DISPLAY=:0.0

# include npm path
export NVM_DIR="/Users/markwang/.nvm"
[ -s "$NVM_DIR/nvm.sh" ] && . "$NVM_DIR/nvm.sh"  # This loads nvm

alias github='cd /Users/markwang/github'
alias stash='cd /Users/markwang/School/2016-2017\ courses'

# add android file path
export USBPATH='/storage/self/primary/files/'
export CDF_GIT='https://markus.teach.cs.toronto.edu/git/csc207-2016-09/wangpeiq'

alias sshserver='ssh markwang@$SERVERIP'
alias mysql='mysql -u public'
alias python='python2'
alias duck='du -sh * | gsort -hr'
alias stat='stat -x'

alias cdf='ssh -Y wangpeiq@teach.cs.utoronto.ca'

# other variables
export SERVERIP=159.203.47.10

mangrep(){
    USAGE="mangrep <application> <switch>"
    if [[ "$#" -ne "2" ]]
      then
          echo "Usage: $USAGE"
      else
          man "$1" | gsed -n "/ *"$2", -/,+3p"  # brew install gnu-sed > gsed
    fi
}

syncSchool(){
    # update files for upload to github
    rsync -tr ~/School/2016-2017\ courses/CSC236/ /Users/markwang/github/Courses/CSC236
    # rsync -tr ~/School/2016-2017\ courses/MGY311/ /Users/markwang/github/Courses/MGY311/
    rsync -tr ~/School/2016-2017\ courses/MAT237/ /Users/markwang/github/Courses/MAT237
}

bds(){
  # build diagnosis service
  cd /Users/markwang/github/phenotips/components/diagnosis-suggestion/api
  mvn clean install -Pquick
  yes | cp ./target/diagnosis-suggestion-api-1.3-SNAPSHOT.jar /Users/markwang/github/phenotips/distribution/standalone/target/phenotips-standalone-1.3-SNAPSHOT/webapps/phenotips/WEB-INF/lib
  cd /Users/markwang/github/phenotips/distribution/standalone/target/phenotips-standalone-1.3-SNAPSHOT
  killall -9 java
  bash start.sh
}


op(){
  bash /Users/markwang/github/myphenotips/distribution/standalone/target/phenotips-standalone-1.3-SNAPSHOT/start.sh
}