Stuart Andrews tub78
tub78
/ debug-2021-01-12.log
Created
January 12, 2021 16:12
rstudio/renv unexpected inclusion of MASS package from base system caused by pkgdown
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| ### -> pwd | |
| ~/DH/home/sandrews/Code/platform/kushy_example | |
| ### -> find . -maxdepth 6 | |
| . | |
| ./_pkgdown.yml | |
| ./.Rprofile | |
| ./renv | |
| ./renv/activate.R | |
| ./renv/library |
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| bb12arens /usr/local -> brew --config | |
| HOMEBREW_VERSION: 0.9.4 | |
| ORIGIN: https://github.com/mxcl/homebrew.git | |
| HEAD: 7facdc743af73f444ea3585eba9e6d118ca16133 | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CELLAR: /usr/local/Cellar | |
| CPU: 16-core 64-bit nehalem | |
| OS X: 10.8.2-x86_64 | |
| Xcode: 4.6 | |
| CLT: 4.6.0.0.1.1358221012 |
tub78
/ output-log.txt
Created
August 22, 2012 17:49
brew install -v cufflinks fails with boost 1.50.0
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| brew install -v cufflinks | |
| dyld: DYLD_ environment variables being ignored because main executable (/usr/bin/sudo) is setuid or setgid | |
| ==> Downloading http://cufflinks.cbcb.umd.edu/downloads/cufflinks-1.3.0.tar.gz | |
| /usr/bin/curl -qf#LA Homebrew 0.9.2 (Ruby 1.8.7-358; Mac OS X 10.8) http://cufflinks.cbcb.umd.edu/downloads/cufflinks-1.3.0.tar.gz -o /Library/Caches/Homebrew/cufflinks-1.3.0.tar.gz --silent | |
| /usr/bin/tar xf /Library/Caches/Homebrew/cufflinks-1.3.0.tar.gz | |
| ==> ./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/cufflinks/1.3.0 | |
| ./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/cufflinks/1.3.0 | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking whether build environment is sane... yes | |
| checking for gawk... no |
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| brew install -v bowtie | |
| dyld: DYLD_ environment variables being ignored because main executable (/usr/bin/sudo) is setuid or setgid | |
| ==> Downloading http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip | |
| /usr/bin/curl -qf#LA Homebrew 0.9.2 (Ruby 1.8.7-358; Mac OS X 10.8) http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip -o /Library/Caches/Homebrew/bowtie-0.12.7.zip --silent | |
| /usr/bin/unzip /Library/Caches/Homebrew/bowtie-0.12.7.zip | |
| Archive: /Library/Caches/Homebrew/bowtie-0.12.7.zip | |
| creating: bowtie-0.12.7/ | |
| inflating: bowtie-0.12.7/aligner_0mm.h | |
| inflating: bowtie-0.12.7/aligner_1mm.h | |
| inflating: bowtie-0.12.7/aligner_23mm.h |
tub78
/ brew install -v discount
Created
August 6, 2012 19:28
discount fails with clang on Mountain Lion
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| + brew install -v discount | |
| dyld: DYLD_ environment variables being ignored because main executable (/usr/bin/sudo) is setuid or setgid | |
| ==> Downloading https://github.com/Orc/discount/tarball/v2.1.3 | |
| Already downloaded: /Library/Caches/Homebrew/discount-2.1.3.tgz | |
| /usr/bin/tar xf /Library/Caches/Homebrew/discount-2.1.3.tgz | |
| ==> ./configure.sh --prefix=/usr/local/Cellar/discount/2.1.3 --mandir=/usr/local/Cellar/discount/2.1.3/share/man --with-dl=Both --enable-all-features | |
| ./configure.sh --prefix=/usr/local/Cellar/discount/2.1.3 --mandir=/usr/local/Cellar/discount/2.1.3/share/man --with-dl=Both --enable-all-features | |
| Configuring for [markdown] | |
| Looking for cpp (/usr/bin/cpp) ok | |
| looking for install (/usr/bin/install) |