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turner/juiceboxjs-example-browser.js

Last active May 19, 2017 13:13
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Browser - Example - JuiceboxJS. An example of how to instantiate an empty JuiceboxJS browser. No contact matrix. No tracks.
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juiceboxjs-example-browser.js
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=1, user-scalable=no">
<meta name="description" content="">
<meta name="author" content="">
<link rel="shortcut icon" href=../img/favicon.ico>
<title>Browser</title>
<!-- Font Awesome CSS -->
<link rel="stylesheet" type="text/css" href="//maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
<!-- jQuery UI CSS -->
<link rel="stylesheet" type="text/css" href="//code.jquery.com/ui/1.12.1/themes/redmond/jquery-ui.css"/>
<!-- IGV CSS -->
<link rel="stylesheet" type="text/css" href="https://igv.org/web/beta/igv-beta.css">
<!-- Juicebox CSS -->
<link rel="stylesheet" type="text/css" href="../dist/juicebox.css">
<!-- Underscore JS -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/underscore.js/1.8.3/underscore-min.js"></script>
<!-- jQuery JS -->
<script src="//code.jquery.com/jquery-1.12.4.min.js"></script>
<!-- jQuery UI JS -->
<script src="//code.jquery.com/ui/1.12.1/jquery-ui.min.js"></script>
<!-- IGV JS -->
<script src="http://igv.org/web/beta/igv-beta.min.js"></script>
<!-- Juicebox JS -->
<script src="../dist/juicebox.js"></script>
</head>
<body>
<div id="app-container">
</div>
<script type="text/javascript">
$(document).ready(function () {
var browser,
reference;
reference =
{
id: "hg19",
fastaURL: "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/1kg_v37/human_g1k_v37_decoy.fasta",
cytobandURL: "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/b37/b37_cytoband.txt"
};
browser = hic.createBrowser($('#app-container'), {reference: reference});
});
</script>
</body>
</html>
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