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May 10, 2017 21:31
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IGV in Bootstrap Tab. Lazy-load browser.
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<script type="text/javascript"> | |
var browser, | |
container, | |
options, | |
$e = $("a[href='#igv']"); | |
options = | |
{ | |
reference: { | |
id: "hg19", | |
fastaURL: "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/1kg_v37/human_g1k_v37_decoy.fasta", | |
cytobandURL: "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/b37/b37_cytoband.txt" | |
}, | |
locus: "chr1:1,000,105-1,000,204", | |
tracks: [ | |
{ | |
name: "Genes", | |
type: "annotation", | |
format: "bed", | |
sourceType: "file", | |
url: "https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg19/genes/refGene.hg19.bed.gz", | |
indexURL: "https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg19/genes/refGene.hg19.bed.gz.tbi", | |
order: Number.MAX_VALUE, | |
visibilityWindow: 300000000, | |
displayMode: "EXPANDED" | |
}, | |
{ | |
name: "Phase 3 WGS variants", | |
format: "vcf", | |
url: "https://s3.amazonaws.com/1000genomes/release/20130502/ALL.wgs.phase3_shapeit2_mvncall_integrated_v5b.20130502.sites.vcf.gz", | |
indexURL: "https://s3.amazonaws.com/1000genomes/release/20130502/ALL.wgs.phase3_shapeit2_mvncall_integrated_v5b.20130502.sites.vcf.gz.tbi", | |
type: "variant" | |
} | |
] | |
}; | |
container = document.getElementById('igvDiv'); | |
$e.on('shown.bs.tab', function(e) { | |
if (undefined === browser) { | |
browser = igv.createBrowser(container, options); | |
} | |
}); | |
if ($('#igv').hasClass('active')) { | |
browser = igv.createBrowser(container, options); | |
} | |
</script> |
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