tzeitim
tzeitim
/ gist:93c9f6f6d8f981f99956d803c2895db1
Last active
February 27, 2024 10:37
select top_n in polars based on a group
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| #top n by clone | |
| top_n = 100 | |
| what = "clone" | |
| df.filter( | |
| pl.int_range(0, pl.len()).over(what) < top_n) | |
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| name: mc2b | |
| channels: | |
| - conda-forge | |
| dependencies: | |
| - gcc_linux-64 | |
| - gxx_linux-64 | |
| - python>=3.9 | |
| - pip | |
| - conda-forge::numpy | |
| - libopenblas |
tzeitim
/ gist:dce4bb9a17c9aa639ebe23f843c8ee5a
Last active
May 3, 2022 10:34
Example of nested parallelization by BLAS on MC2
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| #0 - PROCESSORS: 56 | |
| #0 - call analyze_clean_genes: | |
| #0 - with adata: cc_b3 annotated data with 18806 X 32288 float32s | |
| #0 - with what: __x__ | |
| #0 - with properly_sampled_min_gene_total: 1 | |
| #0 - with noisy_lonely_max_sampled_cells: 10000 | |
| #0 - with noisy_lonely_downsample_min_samples: 750 | |
| #0 - with noisy_lonely_downsample_min_cell_quantile: 0.05 (5%) | |
| #0 - with noisy_lonely_downsample_max_cell_quantile: 0.5 (50%) | |
| #0 - with noisy_lonely_min_gene_total: 100 |
tzeitim
/ gist:2e35fe1960ebe733ad46fafee472dc10
Created
August 23, 2021 13:14
Illegal instruction metacells
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| (test_mc2) [15:08:48 polivar@aquarius:/local/users/polivar] (36600)$ | |
| gdb `which python3` | |
| GNU gdb (GDB) Red Hat Enterprise Linux 7.6.1-120.el7 | |
| Copyright (C) 2013 Free Software Foundation, Inc. | |
| License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> | |
| This is free software: you are free to change and redistribute it. | |
| There is NO WARRANTY, to the extent permitted by law. Type "show copying" | |
| and "show warranty" for details. | |
| This GDB was configured as "x86_64-redhat-linux-gnu". | |
| For bug reporting instructions, please see: |