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Links to and properties of input data for FASP demonstrator at GA4GH Plenary 2020
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fasp_input_data.md

FASP Demonstrator @ GA4GH Plenary 2020: Input Data

Metadata file

name: thousand_genomes_meta.csv
size: 780047
checksums:
  MD5: 0238926f1ff7d62d7052a432968dd379
  CRC32c: 39BE9FFD
urls:
  aws:
    s3:
      url: https://fasp-showoff.s3.eu-central-1.amazonaws.com/thousand_genomes_meta.csv
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/HspRoH
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/HspRoH
  csc:
    ftp:
      url: ftp://vm2722.kaj.pouta.csc.fi/upload/alex/thousand_genomes_meta.csv
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/FFaIaT
        rdsds: drs://rdsds.rahtiapp.fi/6bc267ee29e120d0c3df7692ae00276f5436dfbf3f40da64b48e3fc3d5183de2a5be54695b91a4853c0abbdd59a3b5b884ce70185bfea98926c372fb30db6885
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/FFaIaT
        rdsds: https://rdsds.rahtiapp.fi/ga4gh/drs/v1/objects/6bc267ee29e120d0c3df7692ae00276f5436dfbf3f40da64b48e3fc3d5183de2a5be54695b91a4853c0abbdd59a3b5b884ce70185bfea98926c372fb30db6885
    s3:
      url: https://a3s.fi/GA4GH/thousand_genomes_meta.csv
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/FFaIaT
        rdsds: drs://rdsds.rahtiapp.fi/6bc267ee29e120d0c3df7692ae00276f5436dfbf3f40da64b48e3fc3d5183de2a5be54695b91a4853c0abbdd59a3b5b884ce70185bfea98926c372fb30db6885
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/FFaIaT
        rdsds: https://rdsds.rahtiapp.fi/ga4gh/drs/v1/objects/6bc267ee29e120d0c3df7692ae00276f5436dfbf3f40da64b48e3fc3d5183de2a5be54695b91a4853c0abbdd59a3b5b884ce70185bfea98926c372fb30db6885
  ebi:
    ftp:
      url: ftp://ftp-private.ebi.ac.uk/upload/alex/thousand_genomes_meta.csv
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/UnFPks
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/UnFPks
    s3:
      url: s3://hdr-uk-ebi-local/thousand_genomes_meta.csv
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/UnFPks
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/UnFPks
  imsi:
    ftp:
      url: ftp://172.16.0.248/data/docker/user-data/public/thousand_genomes_meta.csv
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/47HUM6
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/47HUM6
  muni:
    ftp:
      url: ftp://ntc.ics.muni.cz/upload/alex/thousand_genomes_meta.csv
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/W3f8yb
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/W3f8yb

Chromosome 21 VCF

name: CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
size: 19714312656
checksums:
  MD5: 4302c6d8bfed2c396fa60abf3d16d01c
  CRC32c: FB2AD660
urls:
  aws:
    s3:
      url: https://fasp-showoff.s3.eu-central-1.amazonaws.com/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/Pcai8s
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/Pcai8s
  csc:
    ftp:
      url: ftp://vm2722.kaj.pouta.csc.fi/upload/alex/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/VzfoxN
        rdsds: drs://rdsds.rahtiapp.fi/445db32cbaafdf4fd02588a3997e9f8025b3719740d6abc85a6c117df2127c7159ecd1d3fb4bb12a2600ff44f297f5bd760b69f2f48c8800301142d9f0891ad3
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/VzfoxN
        rdsds: https://rdsds.rahtiapp.fi/ga4gh/drs/v1/objects/445db32cbaafdf4fd02588a3997e9f8025b3719740d6abc85a6c117df2127c7159ecd1d3fb4bb12a2600ff44f297f5bd760b69f2f48c8800301142d9f0891ad3
    s3:
      url: https://a3s.fi/GA4GH/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/VzfoxN
        rdsds: drs://rdsds.rahtiapp.fi/445db32cbaafdf4fd02588a3997e9f8025b3719740d6abc85a6c117df2127c7159ecd1d3fb4bb12a2600ff44f297f5bd760b69f2f48c8800301142d9f0891ad3
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/VzfoxN
        rdsds: https://rdsds.rahtiapp.fi/ga4gh/drs/v1/objects/445db32cbaafdf4fd02588a3997e9f8025b3719740d6abc85a6c117df2127c7159ecd1d3fb4bb12a2600ff44f297f5bd760b69f2f48c8800301142d9f0891ad3
  ebi:
    ftp:
      url: ftp://ftp-private.ebi.ac.uk/upload/alex/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/6EYEZG
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/6EYEZG
    s3:
      url: s3://hdr-uk-ebi-local/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/6EYEZG
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/6EYEZG
  imsi:
    ftp:
      url: ftp://172.16.0.248/data/docker/user-data/public/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/znfqHH
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/znfqHH
  muni:
    ftp:
      url: ftp://ntc.ics.muni.cz/upload/alex/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/YpFOO9
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/YpFOO9

Chromosome 21 VCF, truncated

name: ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz
size: 3668947
checksums:
  MD5: 6909941d6b2c9b36ab1fc483434c202a
  CRC32c: 7248D656
urls:
  csc:
    ftp:
      url: ftp://vm2722.kaj.pouta.csc.fi/upload/alex/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/7yciY3
        rdsds: drs://rdsds.rahtiapp.fi/8afd05b2b8b85ef6f90505bbfb47b536a0772d1e072586d24081036454ceffde2938db3e204f38705faf7194b955f78a65d6dd2e0d6620f3a2c5e5db7167e8e9
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/7yciY3
        rdsds: https://rdsds.rahtiapp.fi/ga4gh/drs/v1/objects/8afd05b2b8b85ef6f90505bbfb47b536a0772d1e072586d24081036454ceffde2938db3e204f38705faf7194b955f78a65d6dd2e0d6620f3a2c5e5db7167e8e9
  ebi:
    ftp:
      url: ftp://ftp-private.ebi.ac.uk/upload/alex/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/dNK4n2
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/dNK4n2
  imsi:
    ftp:
      url: ftp://172.16.0.248/data/docker/user-data/public/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/bIu19R
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/bIu19R
  muni:
    ftp:
      url: ftp://ntc.ics.muni.cz/upload/alex/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz
      drs_uri:
        drs_filer: drs://drs-filer-test.c03.k8s-popup.csc.fi/mbmvQn
      drs_url:
        drs_filer: https://drs-filer-test.c03.k8s-popup.csc.fi:443/ga4gh/drs/v1/objects/mbmvQn
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