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JSON payload for registering input data for DRS-Filer
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register_fasp_input_data.md

FASP Demonstrator @ GA4GH Plenary 2020: Input Data DRS-Filer Payloads

Metadata

AWS

{
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    {
      "access_url": {
        "url": "https://fasp-showoff.s3.eu-central-1.amazonaws.com/thousand_genomes_meta.csv"
      },
      "region": "eu-central-1",
      "type": "s3"
    }
  ],
  "checksums": [
    {
      "checksum": "0238926f1ff7d62d7052a432968dd379",
      "type": "md5"
    },
    {
      "checksum": "39BE9FFD",
      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes metadata",
  "mime_type": "text/csv",
  "name": "thousand_genomes_meta.csv",
  "size": 780047,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

CSC

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      "access_url": {
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      "region": "eu-north-1",
      "type": "ftp"
    },
    {
      "access_url": {
        "url": "https://a3s.fi/GA4GH/thousand_genomes_meta.csv"
      },
      "region": "eu-north-1",
      "type": "s3"
    }
  ],
  "checksums": [
    {
      "checksum": "0238926f1ff7d62d7052a432968dd379",
      "type": "md5"
    },
    {
      "checksum": "39BE9FFD",
      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes metadata",
  "mime_type": "text/csv",
  "name": "thousand_genomes_meta.csv",
  "size": 780047,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

EBI

{
  "access_methods": [
    {
      "access_url": {
        "url": "ftp://ftp-private.ebi.ac.uk/upload/alex/thousand_genomes_meta.csv"
      },
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      "type": "ftp"
    },
    {
      "access_url": {
        "url": "s3://hdr-uk-ebi-local/thousand_genomes_meta.csv"
      },
      "region": "eu-west-1",
      "type": "s3"
    }
  ],
  "checksums": [
    {
      "checksum": "0238926f1ff7d62d7052a432968dd379",
      "type": "md5"
    },
    {
      "checksum": "39BE9FFD",
      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes metadata",
  "mime_type": "text/csv",
  "name": "thousand_genomes_meta.csv",
  "size": 780047,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

IMSI

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  "access_methods": [
    {
      "access_url": {
        "url": "ftp://172.16.0.248/data/docker/user-data/public/thousand_genomes_meta.csv"
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      "region": "eu-south-1",
      "type": "ftp"
    }
  ],
  "checksums": [
    {
      "checksum": "0238926f1ff7d62d7052a432968dd379",
      "type": "md5"
    },
    {
      "checksum": "39BE9FFD",
      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes metadata",
  "mime_type": "text/csv",
  "name": "thousand_genomes_meta.csv",
  "size": 780047,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

MUNI

{
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    {
      "access_url": {
        "url": "ftp://ntc.ics.muni.cz/upload/alex/thousand_genomes_meta.csv"
      },
      "region": "eu-central-1",
      "type": "ftp"
    }
  ],
  "checksums": [
    {
      "checksum": "0238926f1ff7d62d7052a432968dd379",
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    },
    {
      "checksum": "39BE9FFD",
      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes metadata",
  "mime_type": "text/csv",
  "name": "thousand_genomes_meta.csv",
  "size": 780047,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

Chromsome 21 VCF

AWS

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        "url": "https://fasp-showoff.s3.eu-central-1.amazonaws.com/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz"
      },
      "region": "eu-central-1",
      "type": "s3"
    }
  ],
  "checksums": [
    {
      "checksum": "4302c6d8bfed2c396fa60abf3d16d01c",
      "type": "md5"
    },
    {
      "checksum": "FB2AD660",
      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes variants, chromosome 21",
  "mime_type": "application/gzip",
  "name": "CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz",
  "size": 19714312656,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

CSC

{
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    {
      "access_url": {
        "url": "ftp://vm2722.kaj.pouta.csc.fi/upload/alex/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz"
      },
      "region": "eu-north-1",
      "type": "ftp"
    },
    {
      "access_url": {
        "url": "https://a3s.fi/GA4GH/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz"
      },
      "region": "eu-north-1",
      "type": "s3"
    }
  ],
  "checksums": [
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      "checksum": "4302c6d8bfed2c396fa60abf3d16d01c",
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      "type": "crc32c"
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  ],
  "created_time": "1600992000",
  "description": "Thousand genomes variants, chromosome 21",
  "mime_type": "application/gzip",
  "name": "CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz",
  "size": 19714312656,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

EBI

{
  "access_methods": [
    {
      "access_url": {
        "url": "ftp://ftp-private.ebi.ac.uk/upload/alex/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz"
      },
      "region": "eu-west-1",
      "type": "ftp"
    },
    {
      "access_url": {
        "url": "s3://hdr-uk-ebi-local/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz"
      },
      "region": "eu-west-1",
      "type": "s3"
    }
  ],
  "checksums": [
    {
      "checksum": "4302c6d8bfed2c396fa60abf3d16d01c",
      "type": "md5"
    },
    {
      "checksum": "FB2AD660",
      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes variants, chromosome 21",
  "mime_type": "application/gzip",
  "name": "CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz",
  "size": 19714312656,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

IMSI

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    {
      "access_url": {
        "url": "ftp://172.16.0.248/data/docker/user-data/public/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz"
      },
      "region": "eu-south-1",
      "type": "ftp"
    }
  ],
  "checksums": [
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    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes variants, chromosome 21",
  "mime_type": "application/gzip",
  "name": "CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz",
  "size": 19714312656,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

MUNI

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      "access_url": {
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      },
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    }
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  "checksums": [
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      "type": "crc32c"
    }
  ],
  "created_time": "1600992000",
  "description": "Thousand genomes variants, chromosome 21",
  "mime_type": "application/gzip",
  "name": "CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gz",
  "size": 19714312656,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

Chromsome 21 VCF, truncated

CSC

{
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    {
      "access_url": {
        "url": "ftp://vm2722.kaj.pouta.csc.fi/upload/alex/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz"
      },
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      "type": "ftp"
    }
  ],
  "checksums": [
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  "updated_time": "1600992000",
  "version": "v1.0.0"
}

EBI

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    {
      "access_url": {
        "url": "ftp://ftp-private.ebi.ac.uk/upload/alex/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz"
      },
      "region": "eu-west-1",
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    }
  ],
  "created_time": "1600992000",
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  "mime_type": "application/gzip",
  "name": "ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz",
  "size": 3668947,
  "updated_time": "1600992000",
  "version": "v1.0.0"
}

IMSI

{
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    {
      "access_url": {
        "url": "ftp://172.16.0.248/data/docker/user-data/public/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz"
      },
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      "type": "ftp"
    }
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  ],
  "created_time": "1600992000",
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  "mime_type": "application/gzip",
  "name": "ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz",
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  "version": "v1.0.0"
}

MUNI

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    {
      "access_url": {
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    }
  ],
  "created_time": "1600992000",
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  "mime_type": "application/gzip",
  "name": "ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes_subsample.vcf.gz",
  "size": 3668947,
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  "version": "v1.0.0"
}
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