Leonardo Castorina universvm

## thesis-eisvogel
%%
% Copyright (c) 2017 - 2021, Pascal Wagler;
% Copyright (c) 2014 - 2021, John MacFarlane
%
% All rights reserved.
%
% Redistribution and use in source and binary forms, with or without
% modification, are permitted provided that the following conditions
% are met:
%

## book tracker with dataview note
### [Books MOC](../0.%20MOC/Books%20MOC.md)
# Social Engineering : The Art of Human Hacking
**Author**:: Chris Hadnagy
**Date**:: 2022-01-01
**Tags**:: #psychology/socialengineering #psychology
**Grade**::  9/10
**Links**::

## Gathering Information

## dataview template
### Basics
```dataview
table tags as "Tags"
from "2. Notes"
WHERE contains(tags, "optimisation")
SORT file.name ASC
```

### VAE
```dataview

## pdb
https://kpwulab.com/2020/01/04/pymol-cartoon-mode/

## Leo_Obsidian_CSS_Snippet.css
.markdown-source-view.mod-cm6 .cm-scroller, .markdown-source-view, .cm-s-obsidian, .cm-s-obsidian span.cm-formatting-task{
margin-top: 40px !important;
}

.workspace-leaf.mod-active .view-header {
    background: linear-gradient(
120deg
, var(--color-view-header-gradient-2) 0.5%, var(--color-view-header-gradient-2) 0.5%);
}

## monomers
3e3vA, 5dicA, 1dvoA, 3cxbA, 3rf0A, 2ra1A, 1a41A, 3giaA, 3dadA, 2of3A, 4y5jA, 4ozwA, 1uzkA, 3klkA, 1g3pA, 2dyiA, 3zbdA, 3kyfA, 1o7iA, 1x8qA, 4i1kA, 2bhuA, 3q1nA, 1jovA, 2v3iA, 4efpA, 4le7A, 3kstA, 3o4pA, 2w18A, 1l0sA, 2j8kA, 1hxrA, 3maoA, 4a6qA, 5b1rA, 3oajA, 4m4dA, 6baqA, 3e8tA, 2v3gA, 5c12A, 3kluA, 3gohA, 3dkrA, 2imhA, 1hq0A, 1ds1A, 3zh4A, 3swgA, 5bufA, 3hvmA, 1h70A, 4fs7A, 3e4gA, 4fcgA, 4wp6A, 4ecoA, 3essA,

## monomers_af2.txt
4le7A
4ozwA
3e8tA
3zh4A
1o7iA
6baqA
3q1nA
1x8qA
3klkA
5b1rA

## convert_to_json.py
# Written by Rokas Petrenas (https://github.com/rokaske199)
from benchmark import get_cath
from pathlib import Path
import json

PATH_TO_PDB=Path('/scratch/datasets/pdb/')
cath_location = "cath-domain-description-file.txt"
cath_df = get_cath.read_data(cath_location)
#select only monomers
new_df=get_cath.filter_with_user_list(cath_df,"/home/s1706179/project/sequence-recovery-benchmark/monomers_af2.txt")

## wandb
docker run --rm -d -v /opt/wandb:/vol -p 9988:8080 --name wandb-local wandb/local

## wikipapers.txt
Acta Biológica Colombiana
Alces
American Journal of Physical Anthropology
The American Naturalist
Annual Review of Physiology
BioEssays
Biologia
The Biological Bulletin
Biological Communications
Biological Reviews
	%%
	% Copyright (c) 2017 - 2021, Pascal Wagler;
	% Copyright (c) 2014 - 2021, John MacFarlane
	%
	% All rights reserved.
	%
	% Redistribution and use in source and binary forms, with or without
	% modification, are permitted provided that the following conditions
	% are met:
	%
	### [Books MOC](../0.%20MOC/Books%20MOC.md)
	# Social Engineering : The Art of Human Hacking
	Author:: Chris Hadnagy
	Date:: 2022-01-01
	Tags:: #psychology/socialengineering #psychology
	Grade:: 9/10
	Links::

	## Gathering Information
	### Basics
	```dataview
	table tags as "Tags"
	from "2. Notes"
	WHERE contains(tags, "optimisation")
	SORT file.name ASC
	```

	### VAE
	```dataview
	.markdown-source-view.mod-cm6 .cm-scroller, .markdown-source-view, .cm-s-obsidian, .cm-s-obsidian span.cm-formatting-task{
	margin-top: 40px !important;
	}

	.workspace-leaf.mod-active .view-header {
	background: linear-gradient(
	120deg
	, var(--color-view-header-gradient-2) 0.5%, var(--color-view-header-gradient-2) 0.5%);
	}
	# Written by Rokas Petrenas (https://github.com/rokaske199)
	from benchmark import get_cath
	from pathlib import Path
	import json

	PATH_TO_PDB=Path('/scratch/datasets/pdb/')
	cath_location = "cath-domain-description-file.txt"
	cath_df = get_cath.read_data(cath_location)
	#select only monomers
	new_df=get_cath.filter_with_user_list(cath_df,"/home/s1706179/project/sequence-recovery-benchmark/monomers_af2.txt")
	Acta Biológica Colombiana
	Alces
	American Journal of Physical Anthropology
	The American Naturalist
	Annual Review of Physiology
	BioEssays
	Biologia
	The Biological Bulletin
	Biological Communications
	Biological Reviews