utgarda

%%% File    : ahocorasik.erl
%%% Author  : Fyodor Ustinov <ufm@ufm.su>
%%% Descrip.: Multiple search based on Aho-Corasick string matching algorithm
%%%
%%% License : GPL
%%%
%%% Usage:
%%%     ahocorasik:match(["pat1", "pat2"], "pat1 pat2 pat1")
%%%     or
%%%	    Tree = ahocorasick:tree(["pat1", "pat2"]) 

utgarda

require 'bio'


reg= Bio::Registry.new
genbank = reg.get_database('genbank')
entry = genbank.get_by_id('AA2CG')
print entry

ff = Bio::FlatFile.new(Bio::GenBank, File.open("/home/etsvigun/devenv/biotech/seq/gbhtg86.seq", 'r'))

utgarda

  <property name="ffi.gem" value="ffi-0.6.0-java.gem"/>
  <property name="ffi-java.gem" value="ffi-0.6.0-java.gem"/>
  <property name="nice-ffi.gem" value="nice-ffi-0.3.gem"/>
  <property name="chipmunk-ffi.gem" value="chipmunk-ffi-1.0.0.gem"/>

        <arg value="${build.lib.dir}/${ffi.gem}"/>
        <arg value="${build.lib.dir}/${ffi-java.gem}"/>
        <arg value="${build.lib.dir}/${nice-ffi.gem}"/>
        <arg value="${build.lib.dir}/${chipmunk-ffi.gem}"/>