Ufuk Turunçoğlu uturuncoglu

## ipe_rim_compare.ipynb

      
              1 file
            
          
              0 forks
            
          
                0 comments
              
            
              0 stars
            
          
                uturuncoglu
                / ipe_rim_compare.ipynb
            
            
              Created
              September 4, 2025 19:36
            
              
                IP-RIM one way coupled comparison
              
          
      Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## Makefile
ifneq ($(origin ESMFMKFILE), environment)
$(error Environment variable ESMFMKFILE was not set.)
endif

include $(ESMFMKFILE)

################################################################################
################################################################################

.SUFFIXES: .f90 .F90 .c .C

## initial_fix.ipynb

      
              1 file
            
          
              1 fork
            
          
                4 comments
              
            
              0 stars
            
          
                uturuncoglu
                / initial_fix.ipynb
            
            
              Last active
              August 1, 2025 15:38
            
              
                Fixes IPE initial condition file
              
          
      Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## process_uxarray.py
import os
import numpy as np
import xarray as xr
import uxarray as ux
from uxarray.conventions import ugrid
import conduit
from conduit import Node

import holoviews as hv
import cartopy.crs as ccrs

## interpolate.ipynb

      
              1 file
            
          
              1 fork
            
          
                1 comment
              
            
              0 stars
            
          
                uturuncoglu
                / interpolate.ipynb
            
            
              Last active
              June 30, 2025 12:39
            
              
                Interpolates global ADCIRC output to regional lat-lon grid using UXArray and ESMPy
              
          
      Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## README.md

      
              3 files
            
          
              0 forks
            
          
                0 comments
              
            
              0 stars
            
          
                uturuncoglu
                / README.md
            
            
              Created
              April 23, 2025 17:08
            
              
                Scripts to attach GDB to hanged processes
              
          
    The following scripts can be used to collect backtrace from hanged processes using GDB.
How it works?

Edit trace.sh and modify the exename variable with the one used.
Run script as ./trace.sh JOB_ID. In this case, JOB_ID is the job id provided by the job schedular.
The script will trigger trace_cmd.sh and collect trace.

Limitations

The trace.sh script is designed to run with openPBS job schedular.


## esmf_mesh.py
import os
import sys
import argparse
import subprocess
import numpy as np
import xarray as xr
from datetime import datetime

def file_type(x):
    if x.lower() == 'scrip' or x.lower() == 'esmf':

## config.yaml
cdeps:
  execution:
    executable: /usr/bin/date
    batchargs:
      nodes: 1
      stdout: /work2/noaa/nems/tufuk/COASTAL/ufs-coastal-app/sorc/uwtools/runscript.out
      walltime: "00:05:00"
  atm_in:
    update_values:
      datm_nml:

## README.md

      
              7 files
            
          
              0 forks
            
          
                1 comment
              
            
              0 stars
            
          
                uturuncoglu
                / README.md
            
            
              Last active
              October 20, 2024 06:07
            
              
                Cookbook for FV3 CDEPS Inline Implementation and using Great Lakes FVCOM Data
              
          
    External Docs


CDEPS: https://escomp.github.io/CDEPS/versions/master/html/index.html
SRW App: https://ufs-srweather-app.readthedocs.io/en/develop/UsersGuide/BuildingRunningTesting/RunSRW.html#grid-configuration

Steps

Step 1: Run Workflow on Derecho to produce test case

  
## plot_cubed.ncl
load "$NCARG_ROOT/lib/ncarg/nclscripts/contrib/ut_string.ncl"

procedure add_box(wks,plot,ll[2],width,cname,oval)
local xbox, ybox, gsres, dumstr
begin
  xbox = (/ll(0),ll(0)+width,ll(0)+width,ll(0),ll(0)/)
  ybox = (/ll(1),ll(1),ll(1)+width,ll(1)+width,ll(1)/)

  gsres                = True
  gsres@gsFillColor    = cname
	ifneq ($(origin ESMFMKFILE), environment)
	$(error Environment variable ESMFMKFILE was not set.)
	endif

	include $(ESMFMKFILE)

	################################################################################
	################################################################################

	.SUFFIXES: .f90 .F90 .c .C
	import os
	import numpy as np
	import xarray as xr
	import uxarray as ux
	from uxarray.conventions import ugrid
	import conduit
	from conduit import Node

	import holoviews as hv
	import cartopy.crs as ccrs
	import os
	import sys
	import argparse
	import subprocess
	import numpy as np
	import xarray as xr
	from datetime import datetime

	def file_type(x):
	if x.lower() == 'scrip' or x.lower() == 'esmf':
	cdeps:
	execution:
	executable: /usr/bin/date
	batchargs:
	nodes: 1
	stdout: /work2/noaa/nems/tufuk/COASTAL/ufs-coastal-app/sorc/uwtools/runscript.out
	walltime: "00:05:00"
	atm_in:
	update_values:
	datm_nml:
	load "$NCARG_ROOT/lib/ncarg/nclscripts/contrib/ut_string.ncl"

	procedure add_box(wks,plot,ll[2],width,cname,oval)
	local xbox, ybox, gsres, dumstr
	begin
	xbox = (/ll(0),ll(0)+width,ll(0)+width,ll(0),ll(0)/)
	ybox = (/ll(1),ll(1),ll(1)+width,ll(1)+width,ll(1)/)

	gsres = True
	gsres@gsFillColor = cname