uturuncoglu

cdeps:
  execution:
    executable: /usr/bin/date
    batchargs:
      nodes: 1
      stdout: /work2/noaa/nems/tufuk/COASTAL/ufs-coastal-app/sorc/uwtools/runscript.out
      walltime: "00:05:00"
  atm_in:
    update_values:
      datm_nml:

uturuncoglu

Steps

Get Code and Build

The work is still in a development fork.

• git clone --recursive -b feature/inline https://github.com/uturuncoglu/ufs-weather-model.git
• cd ufs-weather-model/tests

uturuncoglu

load "$NCARG_ROOT/lib/ncarg/nclscripts/contrib/ut_string.ncl"

procedure add_box(wks,plot,ll[2],width,cname,oval)
local xbox, ybox, gsres, dumstr
begin
  xbox = (/ll(0),ll(0)+width,ll(0)+width,ll(0),ll(0)/)
  ybox = (/ll(1),ll(1),ll(1)+width,ll(1)+width,ll(1)/)

  gsres                = True
  gsres@gsFillColor    = cname

uturuncoglu

begin
 ;--- arguments ---
 nx = 720
 ny = 600

 ;--- get list of files ---
 files = systemfunc("ls -al ufs.hafs.cpl.hi.* | awk '{print $9}' | grep -v '_reshp.nc'")
 nfiles = dimsizes(files)

 ;--- loop over files and reshape atm ones ---

uturuncoglu

begin
  ;--- arguments ---
  vname = "zeta"
  vname = "uwind_speed"
  vname = "vwind_speed"

  tindx = 71

  ;--- open file ---
  nc = addfile("sci_0001.nc", "r")

uturuncoglu

To run the script just type following:

python mesh_create.py --ifile data.nc

The script requires numpy, xarray, dask and also datetime modules. The required data file can be found in the following repository

https://github.com/uturuncoglu/data/blob/main/mesh/data.nc

uturuncoglu

# install docker
https://www.docker.com

# create container and prepare for development
docker run -it ubuntu:latest

apt-get -qq update
apt-get -qq install tar unzip file gringo
apt-get -qq install build-essential binutils-dev gfortran
apt-get -qq install python3-dev python3-pip python3-boto3 python3-yaml

uturuncoglu

% commands to use this script
% grid.txt:
% #
% # gridID 1
% #
% gridtype  = lonlat
% gridsize  = 129600 
% datatype  = float
% xsize     = 360 
% ysize     = 360

uturuncoglu

#!/bin/bash
#PBS -A P93300606
#PBS -N mesh
#PBS -j oe
#PBS -q premium
#PBS -l walltime=03:00:00
#PBS -l select=1:mpiprocs=36
#PBS -o log.out

#export TMPDIR=/glade/scratch/$USER/temp

uturuncoglu

; Note for user:
; The orog.tile*.nc files can be generated by simply using following command
; for each tile of surface output.
; ncks -v orog sfcf000.tile1.nc orog.tile1.nc
begin
  ;--- arguments ---
  ntiles = 6
  did = 0
  diff = True
  mask_land = False