Created
October 25, 2011 15:49
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Bioclipse log Vista 32 bit
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!SESSION 2011-10-20 13:57:45.113 ----------------------------------------------- | |
eclipse.buildId=2.5.0.201108060919 | |
java.version=1.6.0_29 | |
java.vendor=Sun Microsystems Inc. | |
BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=en_US | |
Framework arguments: -noupdate | |
Command-line arguments: -os win32 -ws win32 -arch x86 -data @nodefault -noupdate -consolelog | |
!ENTRY org.eclipse.core.resources 2 10035 2011-10-20 13:57:50.051 | |
!MESSAGE The workspace exited with unsaved changes in the previous session; refreshing workspace to recover changes. | |
!ENTRY de.walware.rj.servi 4 0 2011-10-20 13:58:01.917 | |
!MESSAGE An exception was thrown when trying to start the node (make a node). | |
!STACK 0 | |
de.walware.rj.RjException: Error starting R node: | |
<COMMAND> | |
C:\Program Files\Java\jre6\bin\java | |
-classpath | |
/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.data_0.5.5.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.server_0.5.5.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.servi_0.5.3.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.client_0.5.1.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/org.eclipse.equinox.common_3.6.0.v20100503.jar;/c:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/org.eclipse.osgi_3.6.2.R36x_v20110210.jar | |
-Djava.security.policy=jar:file:/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.server_0.5.5.201107191712.jar!/localhost.policy | |
-Djava.rmi.server.codebase=file:/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.server_0.5.5.201107191712.jar | |
-Xss16384k | |
de.walware.rj.servi.internal.NodeController | |
rmi://127.0.0.1:63860/Rconsole-1319111880617 | |
-verbose | |
</COMMAND> | |
<STDOUT> | |
</STDOUT> | |
<LOG file="out.log"> | |
(RServi) R node log | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.srvImpl.AbstractServerControl initVerbose | |
CONFIG: verbose mode enabled. | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.srvImpl.AbstractServerControl initVerbose | |
CONFIG: java properties: | |
java.runtime.name=Java(TM) SE Runtime Environment | |
sun.boot.library.path=C:\Program Files\Java\jre6\bin | |
java.vm.version=20.4-b02 | |
java.vm.vendor=Sun Microsystems Inc. | |
java.vendor.url=http://java.sun.com/ | |
path.separator=; | |
java.vm.name=Java HotSpot(TM) Client VM | |
file.encoding.pkg=sun.io | |
sun.java.launcher=SUN_STANDARD | |
user.country=US | |
sun.os.patch.level=Service Pack 2 | |
java.vm.specification.name=Java Virtual Machine Specification | |
user.dir=C:\Users\ADMINI~1\AppData\Local\Temp\Rconsole-1319111880617 | |
java.runtime.version=1.6.0_29-b11 | |
java.awt.graphicsenv=sun.awt.Win32GraphicsEnvironment | |
java.endorsed.dirs=C:\Program Files\Java\jre6\lib\endorsed | |
os.arch=x86 | |
java.io.tmpdir=C:\Users\ADMINI~1\AppData\Local\Temp\ | |
line.separator= | |
java.vm.specification.vendor=Sun Microsystems Inc. | |
user.variant= | |
os.name=Windows Vista | |
sun.jnu.encoding=Cp1252 | |
java.library.path=C:\Program Files\Java\jre6\bin;C:\Windows\Sun\Java\bin;C:\Windows\system32;C:\Windows;C:\Program Files\R\R-2.13.2\bin\i386;C:/Program Files/Java/jre6/bin/client;C:/Program Files/Java/jre6/bin;C:/Program Files/Java/jre6/lib/i386;C:\Program Files\Parallels\Parallels Tools\Applications;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Users\Administrator\Documents\Bioclipse.2.5.0;;. | |
java.specification.name=Java Platform API Specification | |
java.class.version=50.0 | |
sun.management.compiler=HotSpot Client Compiler | |
os.version=6.0 | |
user.home=C:\Users\Administrator | |
java.security.policy=jar:file:/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.server_0.5.5.201107191712.jar!/localhost.policy | |
user.timezone=Europe/Berlin | |
java.awt.printerjob=sun.awt.windows.WPrinterJob | |
file.encoding=Cp1252 | |
java.specification.version=1.6 | |
java.class.path=/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.data_0.5.5.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.server_0.5.5.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.servi_0.5.3.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.client_0.5.1.201107191712.jar;/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/org.eclipse.equinox.common_3.6.0.v20100503.jar;/c:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/org.eclipse.osgi_3.6.2.R36x_v20110210.jar | |
user.name=Administrator | |
java.vm.specification.version=1.0 | |
sun.java.command=de.walware.rj.servi.internal.NodeController rmi://127.0.0.1:63860/Rconsole-1319111880617 -verbose | |
java.home=C:\Program Files\Java\jre6 | |
sun.arch.data.model=32 | |
user.language=en | |
java.specification.vendor=Sun Microsystems Inc. | |
awt.toolkit=sun.awt.windows.WToolkit | |
java.vm.info=mixed mode, sharing | |
java.version=1.6.0_29 | |
java.ext.dirs=C:\Program Files\Java\jre6\lib\ext;C:\Windows\Sun\Java\lib\ext | |
sun.boot.class.path=C:\Program Files\Java\jre6\lib\resources.jar;C:\Program Files\Java\jre6\lib\rt.jar;C:\Program Files\Java\jre6\lib\sunrsasign.jar;C:\Program Files\Java\jre6\lib\jsse.jar;C:\Program Files\Java\jre6\lib\jce.jar;C:\Program Files\Java\jre6\lib\charsets.jar;C:\Program Files\Java\jre6\lib\modules\jdk.boot.jar;C:\Program Files\Java\jre6\classes | |
java.vendor=Sun Microsystems Inc. | |
file.separator=\ | |
java.vendor.url.bug=http://java.sun.com/cgi-bin/bugreport.cgi | |
sun.io.unicode.encoding=UnicodeLittle | |
sun.cpu.endian=little | |
sun.desktop=windows | |
java.rmi.server.codebase=file:/C:/Users/Administrator/Documents/Bioclipse.2.5.0/plugins/de.walware.rj.server_0.5.5.201107191712.jar | |
sun.cpu.isalist=pentium_pro+mmx pentium_pro pentium+mmx pentium i486 i386 i86 | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.srvImpl.AbstractServerControl initVerbose | |
CONFIG: env variables: | |
USERPROFILE=C:\Users\Administrator | |
ProgramData=C:\ProgramData | |
PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC | |
JAVA_HOME=C:\Program Files\Java\jre6 | |
TRACE_FORMAT_SEARCH_PATH=\\winseqfe\release\Windows6.0\lh_sp2rtm\6002.18005.090410-1830\x86fre\symbols.pri\TraceFormat | |
TEMP=C:\Users\ADMINI~1\AppData\Local\Temp | |
SystemDrive=C: | |
ProgramFiles=C:\Program Files | |
HOMEDRIVE=C: | |
PROCESSOR_REVISION=170a | |
USERDOMAIN=MACMINI69E6 | |
ALLUSERSPROFILE=C:\ProgramData | |
DFSTRACINGON=FALSE | |
PROCESSOR_IDENTIFIER=x86 Family 6 Model 23 Stepping 10, GenuineIntel | |
SESSIONNAME=Console | |
R_HOME=C:\Program Files\R\R-2.13.2 | |
TMP=C:\Users\ADMINI~1\AppData\Local\Temp | |
LOGONSERVER=\\MACMINI69E6 | |
CommonProgramFiles=C:\Program Files\Common Files | |
=::=::\ | |
PROCESSOR_ARCHITECTURE=x86 | |
FP_NO_HOST_CHECK=NO | |
OS=Windows_NT | |
PATH=C:\Program Files\R\R-2.13.2\bin\i386;C:/Program Files/Java/jre6/bin/client;C:/Program Files/Java/jre6/bin;C:/Program Files/Java/jre6/lib/i386;C:\Program Files\Parallels\Parallels Tools\Applications;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Users\Administrator\Documents\Bioclipse.2.5.0; | |
HOMEPATH=\Users\Administrator | |
PROCESSOR_LEVEL=6 | |
LOCALAPPDATA=C:\Users\Administrator\AppData\Local | |
COMPUTERNAME=MACMINI69E6 | |
windir=C:\Windows | |
SystemRoot=C:\Windows | |
NUMBER_OF_PROCESSORS=1 | |
USERNAME=Administrator | |
PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ | |
PUBLIC=C:\Users\Public | |
R_ARCH=/i386 | |
ComSpec=C:\Windows\system32\cmd.exe | |
APPDATA=C:\Users\Administrator\AppData\Roaming | |
Oct 20, 2011 1:58:00 PM de.walware.rj.servi.internal.NodeController start | |
INFO: [Control:Rconsole-1319111880617] Initializing R node... | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader <init> | |
CONFIG: System URL classloader: enabled | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader <init> | |
CONFIG: Alternative classloader: disabled | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader initRLibs | |
CONFIG: JR library path: | |
C:/Program Files/R/R-2.13.2/library | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader addClassPath | |
FINE: Added 'C:\Program Files\R\R-2.13.2\library\rJava\java' to classpath of URL loader | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader <init> | |
CONFIG: registered JRI: C:\Program Files\R\R-2.13.2\library\rj\jri\i386\jri.dll | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader addClassPath | |
FINE: Added 'C:\Program Files\R\R-2.13.2\library\rj\jri\JRI.jar' to classpath of URL loader | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader addClassPath | |
FINE: Added 'C:\Program Files\R\R-2.13.2\library\rj\server\rj.jar' to classpath of URL loader | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader addClassPath | |
FINE: Added 'C:\Users\Administrator\Documents\Bioclipse.2.5.0\plugins\de.walware.rj.server_0.5.5.201107191712.jar' to classpath of URL loader | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findClass | |
FINER: ENTRY org.rosuda.JRI.REXP | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'org.rosuda.JRI.REXP' using URL loader | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findClass | |
FINER: ENTRY org.rosuda.JRI.RMainLoopCallbacks | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'org.rosuda.JRI.RMainLoopCallbacks' using URL loader | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findClass | |
FINER: ENTRY org.rosuda.JRI.Rengine | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'org.rosuda.JRI.Rengine' using URL loader | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findClass | |
FINER: ENTRY org.rosuda.JRI.Mutex | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'org.rosuda.JRI.Mutex' using URL loader | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findLibrary | |
FINER: ENTRY jri | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findLibrary | |
FINE: Mapping to C:\Program Files\R\R-2.13.2\library\rj\jri\i386\jri.dll | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findClass | |
FINER: ENTRY de.walware.rj.server.jri.JRIServer | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'de.walware.rj.server.jri.JRIServer' using URL loader | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findClass | |
FINER: ENTRY de.walware.rj.server.jri.JRIServer$InitCallbacks | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'de.walware.rj.server.jri.JRIServer$InitCallbacks' using URL loader | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findLibrary | |
FINER: ENTRY jri | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findLibrary | |
FINE: Mapping to C:\Program Files\R\R-2.13.2\library\rj\jri\i386\jri.dll | |
Oct 20, 2011 1:58:00 PM RJavaClassLoader findClass | |
FINER: ENTRY org.rosuda.JRI.RConfig | |
Oct 20, 2011 1:58:00 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'org.rosuda.JRI.RConfig' using URL loader | |
Oct 20, 2011 1:58:01 PM RJavaClassLoader findClass | |
FINER: ENTRY de.walware.rj.server.jri.JRIObjectFactory | |
Oct 20, 2011 1:58:01 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'de.walware.rj.server.jri.JRIObjectFactory' using URL loader | |
Oct 20, 2011 1:58:01 PM de.walware.rj.server.jri.JRIServer initEngine | |
FINER: Pointers: | |
NULL = 0xa9e24a0 | |
Unbound = 0xa9e2484 | |
MissingArg = 0xa9e2468 | |
BaseEnv = 0x20d5d70 | |
AutoloadEnv = 0xa9ff69c | |
RJTempEnv = 0xef1f308 | |
functionSymbol = 0xa9ed388 | |
ifSymbol = 0xa9ed5d4 | |
AssignSymbol = 0xa9ed334 | |
xSymbol = 0x20d9a34 | |
zSymbol = 0xea97104 | |
objectSymbol = 0xaa31118 | |
envSymbol = 0x20d8de8 | |
nameSymbol = 0xa9e2158 | |
realSymbol = 0xa997a20 | |
imaginarySymbol = 0xef1f688 | |
newSymbol = 0xaa46afc | |
ClassSymbol = 0xef1f618 | |
exprSymbol = 0x20ddf88 | |
errorSymbol = 0xaa03c90 | |
factorClassString = 0xef1da20 | |
orderedClassString = 0xef1da40 | |
dataframeClassString = 0xef1da00 | |
lengthFun = 0x3f09a0 | |
complexFun = 0xef1f1d4 | |
envNameFun = 0xef20c04 | |
headerFun = 0xef21a98 | |
s4classFun = 0xef21750 | |
slotNamesFun = 0xef28540 | |
ReFun = 0x3f43b4 | |
ImFun = 0x3f4360 | |
ItemFun = 0xa9ed104 | |
tryCatchFun = 0xaa07c94 | |
evalTryCatch_errorExpr = 0xef2a630 | |
evalTemp_classExpr = 0xef29f58 | |
evalTemp_rmExpr = 0xef29f18 | |
evalDummyExpr = 0xef29e58 | |
Oct 20, 2011 1:58:01 PM RJavaClassLoader findClass | |
FINER: ENTRY de.walware.rj.server.jri.JRIVectorImpl | |
Oct 20, 2011 1:58:01 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'de.walware.rj.server.jri.JRIVectorImpl' using URL loader | |
Oct 20, 2011 1:58:01 PM RJavaClassLoader findClass | |
FINER: ENTRY de.walware.rj.server.jri.JRICharacterDataImpl | |
Oct 20, 2011 1:58:01 PM de.walware.rj.server.jri.loader.JRIClassLoader findClass | |
FINE: Found class 'de.walware.rj.server.jri.JRICharacterDataImpl' using URL loader | |
Oct 20, 2011 1:58:01 PM de.walware.rj.server.jri.JRIServer start | |
INFO: R engine started successfully. New Client-State: 'Connected'. | |
Oct 20, 2011 1:58:01 PM de.walware.rj.servi.internal.NodeServer start1 | |
FINE: Initializing R node: Loading R package 'rj'... | |
Oct 20, 2011 1:58:01 PM de.walware.rj.servi.internal.NodeServer start1 | |
FINE: Initializing R node: Preparing R workspace for first client... | |
Oct 20, 2011 1:58:01 PM de.walware.rj.servi.internal.NodeController start | |
FINE: [Control:Rconsole-1319111880617] Initializing R node: R engine started and initialized. | |
Oct 20, 2011 1:58:01 PM de.walware.rj.servi.internal.NodeController start | |
FINE: [Control:Rconsole-1319111880617] Initializing R node: Publishing in registry... | |
Oct 20, 2011 1:58:01 PM de.walware.rj.server.srvImpl.AbstractServerControl publishServer | |
SEVERE: [Control:Rconsole-1319111880617] init server failed. | |
java.rmi.ServerException: RemoteException occurred in server thread; nested exception is: | |
java.rmi.UnmarshalException: error unmarshalling arguments; nested exception is: | |
java.lang.ClassNotFoundException: access to class loader denied | |
at sun.rmi.server.UnicastServerRef.oldDispatch(Unknown Source) | |
at sun.rmi.server.UnicastServerRef.dispatch(Unknown Source) | |
at sun.rmi.transport.Transport$1.run(Unknown Source) | |
at java.security.AccessController.doPrivileged(Native Method) | |
at sun.rmi.transport.Transport.serviceCall(Unknown Source) | |
at sun.rmi.transport.tcp.TCPTransport.handleMessages(Unknown Source) | |
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(Unknown Source) | |
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(Unknown Source) | |
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) | |
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) | |
at java.lang.Thread.run(Unknown Source) | |
at sun.rmi.transport.StreamRemoteCall.exceptionReceivedFromServer(Unknown Source) | |
at sun.rmi.transport.StreamRemoteCall.executeCall(Unknown Source) | |
at sun.rmi.server.UnicastRef.invoke(Unknown Source) | |
at sun.rmi.registry.RegistryImpl_Stub.bind(Unknown Source) | |
at java.rmi.Naming.bind(Unknown Source) | |
at de.walware.rj.server.srvImpl.AbstractServerControl.publishServer(AbstractServerControl.java:187) | |
at de.walware.rj.servi.internal.NodeController.start(NodeController.java:75) | |
at de.walware.rj.servi.internal.NodeController.main(NodeController.java:48) | |
Caused by: java.rmi.UnmarshalException: error unmarshalling arguments; nested exception is: | |
java.lang.ClassNotFoundException: access to class loader denied | |
at sun.rmi.registry.RegistryImpl_Skel.dispatch(Unknown Source) | |
at sun.rmi.server.UnicastServerRef.oldDispatch(Unknown Source) | |
at sun.rmi.server.UnicastServerRef.dispatch(Unknown Source) | |
at sun.rmi.transport.Transport$1.run(Unknown Source) | |
at java.security.AccessController.doPrivileged(Native Method) | |
at sun.rmi.transport.Transport.serviceCall(Unknown Source) | |
at sun.rmi.transport.tcp.TCPTransport.handleMessages(Unknown Source) | |
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(Unknown Source) | |
at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(Unknown Source) | |
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) | |
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) | |
at java.lang.Thread.run(Unknown Source) | |
Caused by: java.lang.ClassNotFoundException: access to class loader denied | |
at sun.rmi.server.LoaderHandler.loadProxyClass(Unknown Source) | |
at java.rmi.server.RMIClassLoader$2.loadProxyClass(Unknown Source) | |
at java.rmi.server.RMIClassLoader.loadProxyClass(Unknown Source) | |
at sun.rmi.server.MarshalInputStream.resolveProxyClass(Unknown Source) | |
at java.io.ObjectInputStream.readProxyDesc(Unknown Source) | |
at java.io.ObjectInputStream.readClassDesc(Unknown Source) | |
at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source) | |
at java.io.ObjectInputStream.readObject0(Unknown Source) | |
at java.io.ObjectInputStream.readObject(Unknown Source) | |
... 12 more | |
Caused by: java.security.AccessControlException: access denied (java.io.FilePermission \C:\Users\Administrator\Documents\Bioclipse.2.5.0\plugins\- read) | |
at java.security.AccessControlContext.checkPermission(Unknown Source) | |
at java.security.AccessController.checkPermission(Unknown Source) | |
at java.lang.SecurityManager.checkPermission(Unknown Source) | |
at sun.rmi.server.LoaderHandler$Loader.checkPermissions(Unknown Source) | |
at sun.rmi.server.LoaderHandler$Loader.access$000(Unknown Source) | |
... 21 more | |
Oct 20, 2011 1:58:01 PM de.walware.rj.server.srvImpl.AbstractServerControl checkCleanup | |
INFO: [Control:Rconsole-1319111880617] cleaning up server resources... | |
</LOG> | |
-------- | |
at de.walware.rj.servi.internal.LocalNodeFactory.createNode(LocalNodeFactory.java:473) | |
at de.walware.rj.servi.internal.EmbeddedManager.start(EmbeddedManager.java:83) | |
at net.bioclipse.r.RServiManager.startEmbedded(RServiManager.java:177) | |
at net.bioclipse.r.RServiManager.setEmbedded(RServiManager.java:119) | |
at net.bioclipse.r.business.RBusinessManager.<init>(RBusinessManager.java:89) | |
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) | |
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) | |
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) | |
at java.lang.reflect.Constructor.newInstance(Unknown Source) | |
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:83) | |
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:61) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:807) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:769) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:412) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:383) | |
at java.security.AccessController.doPrivileged(Native Method) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:353) | |
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245) | |
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:169) | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242) | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164) | |
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269) | |
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1172) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:940) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:437) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:383) | |
at java.security.AccessController.doPrivileged(Native Method) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:353) | |
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245) | |
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:169) | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242) | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164) | |
at org.springframework.beans.factory.support.AbstractBeanFactory.isSingleton(AbstractBeanFactory.java:348) | |
at org.springframework.osgi.service.exporter.support.OsgiServiceFactoryBean.afterPropertiesSet(OsgiServiceFactoryBean.java:179) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1288) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1257) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:438) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:383) | |
at java.security.AccessController.doPrivileged(Native Method) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:353) | |
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245) | |
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:169) | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242) | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164) | |
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:394) | |
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:736) | |
at org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext.completeRefresh(AbstractDelegatedExecutionApplicationContext.java:251) | |
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$CompleteRefreshTask.run(DependencyWaiterApplicationContextExecutor.java:136) | |
at java.lang.Thread.run(Unknown Source) | |
Caused by: de.walware.rj.RjException: R node process stopped (exit code = 156). | |
at de.walware.rj.servi.internal.LocalNodeFactory.createNode(LocalNodeFactory.java:393) | |
... 49 more |
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