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August 15, 2019 19:16
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(partial) EasyBuild log for failed build of /tmp/eb-fP3wRz/files_pr8760/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.9-foss-2019a-R-3.6.0.eb (PR #8760)
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CC circle.lo | |
circle.c: In function 'circleLayout': | |
circle.c:285:5: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
xf += delx; | |
~~~^~~~~~~ | |
circle.c:268:20: note: 'delx' was declared here | |
double xf = 0, delx, d; | |
^~~~ | |
CCLD libtwopigen_C.la | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/twopigen' | |
make[4]: Nothing to be done for 'install-exec-am'. | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/twopigen' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/twopigen' | |
Making install in sfdpgen | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen' | |
CC sfdpinit.lo | |
CC spring_electrical.lo | |
spring_electrical.c: In function 'rotate': | |
spring_electrical.c:1850:8: warning: variable 'y' set but not used [-Wunused-but-set-variable] | |
real y[4], axis[2], center[2], x0, x1; | |
^ | |
CC LinkedList.lo | |
CC sparse_solve.lo | |
CC post_process.lo | |
post_process.c: In function 'StressMajorizationSmoother2_new': | |
post_process.c:110:36: warning: variable 'dd' set but not used [-Wunused-but-set-variable] | |
real *avg_dist, diag_d, diag_w, *dd, dist, s = 0, stop = 0, sbot = 0; | |
^~ | |
post_process.c: In function 'StressMajorizationSmoother_smooth': | |
post_process.c:578:102: warning: variable 'res' set but not used [-Wunused-but-set-variable] | |
real *w, *dd, *d, *y = NULL, *x0 = NULL, *x00 = NULL, diag, diff = 1, *lambda = sm->lambda, maxit, res, alpha = 0., M = 0.; | |
^~~ | |
post_process.c:578:9: warning: variable 'w' set but not used [-Wunused-but-set-variable] | |
real *w, *dd, *d, *y = NULL, *x0 = NULL, *x00 = NULL, diag, diff = 1, *lambda = sm->lambda, maxit, res, alpha = 0., M = 0.; | |
^ | |
post_process.c:577:32: warning: variable 'jw' set but not used [-Wunused-but-set-variable] | |
int i, j, m, *id, *jd, *iw, *jw, idiag, flag = 0, iter = 0; | |
^~ | |
post_process.c:577:27: warning: variable 'iw' set but not used [-Wunused-but-set-variable] | |
int i, j, m, *id, *jd, *iw, *jw, idiag, flag = 0, iter = 0; | |
^~ | |
post_process.c: In function 'TriangleSmoother_new': | |
post_process.c:698:68: warning: variable 'jd' set but not used [-Wunused-but-set-variable] | |
int i, j, k, m = A->m, *ia = A->ia, *ja = A->ja, *iw, *jw, *id, *jd, jdiag, nz; | |
^~ | |
post_process.c:698:63: warning: variable 'id' set but not used [-Wunused-but-set-variable] | |
int i, j, k, m = A->m, *ia = A->ia, *ja = A->ja, *iw, *jw, *id, *jd, jdiag, nz; | |
^~ | |
CC stress_model.lo | |
CC uniform_stress.lo | |
uniform_stress.c: In function 'uniform_stress': | |
uniform_stress.c:112:8: warning: variable 'res' set but not used [-Wunused-but-set-variable] | |
real res; | |
^~~ | |
CC QuadTree.lo | |
CC Multilevel.lo | |
Multilevel.c: In function 'maximal_independent_vertex_set': | |
Multilevel.c:87:30: warning: variable 'n' set but not used [-Wunused-but-set-variable] | |
int i, ii, j, *ia, *ja, m, n, *p = NULL; | |
^ | |
Multilevel.c: In function 'maximal_independent_vertex_set_RS': | |
Multilevel.c:138:57: warning: variable 'removed' set but not used [-Wunused-but-set-variable] | |
int i, jj, ii, *p = NULL, j, k, *ia, *ja, m, n, gain, removed, nf = 0; | |
^~~~~~~ | |
Multilevel.c:138:48: warning: variable 'n' set but not used [-Wunused-but-set-variable] | |
int i, jj, ii, *p = NULL, j, k, *ia, *ja, m, n, gain, removed, nf = 0; | |
^ | |
Multilevel.c: In function 'maximal_independent_edge_set_heavest_edge_pernode_leaves_first': | |
Multilevel.c:327:30: warning: variable 'n' set but not used [-Wunused-but-set-variable] | |
int i, ii, j, *ia, *ja, m, n, *p = NULL, q; | |
^ | |
Multilevel.c: In function 'maximal_independent_edge_set_heavest_edge_pernode_supernodes_first': | |
Multilevel.c:502:30: warning: variable 'n' set but not used [-Wunused-but-set-variable] | |
int i, ii, j, *ia, *ja, m, n, *p = NULL; | |
^ | |
Multilevel.c: In function 'maximal_independent_edge_set_heavest_cluster_pernode_leaves_first': | |
Multilevel.c:646:30: warning: variable 'n' set but not used [-Wunused-but-set-variable] | |
int i, ii, j, *ia, *ja, m, n, *p = NULL, q, iv; | |
^ | |
CC PriorityQueue.lo | |
CCLD libsfdpgen_C.la | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen' | |
make[4]: Nothing to be done for 'install-exec-am'. | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/sfdpgen' | |
Making install in osage | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage' | |
CC osageinit.lo | |
CCLD libosage_C.la | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage' | |
make[4]: Nothing to be done for 'install-exec-am'. | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib/osage' | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib' | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib' | |
make[4]: Nothing to be done for 'install-exec-am'. | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib' | |
make[2]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/lib' | |
Making install in plugin | |
make[2]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin' | |
Making install in core | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core' | |
CC gvplugin_core.lo | |
CC gvrender_core_dot.lo | |
In file included from gvrender_core_dot.c:32: | |
gvrender_core_dot.c: In function 'xdot_str': | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
gvrender_core_dot.c:100:5: note: in expansion of macro 'agxbputc' | |
agxbputc(xbufs[emit_state], ' '); | |
^~~~~~~~ | |
gvrender_core_dot.c: In function 'xdot_points': | |
gvrender_core_dot.c:107:12: warning: variable 'rc' set but not used [-Wunused-but-set-variable] | |
int i, rc; | |
^~ | |
In file included from gvrender_core_dot.c:32: | |
gvrender_core_dot.c: In function 'xdot_style': | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
gvrender_core_dot.c:162:13: note: in expansion of macro 'agxbputc' | |
agxbputc(&xbuf, '('); | |
^~~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
gvrender_core_dot.c:166:21: note: in expansion of macro 'agxbputc' | |
agxbputc(&xbuf, ','); | |
^~~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
gvrender_core_dot.c:172:13: note: in expansion of macro 'agxbputc' | |
agxbputc(&xbuf, ')'); | |
^~~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:174:30: note: in expansion of macro 'agxbuse' | |
xdot_str (job, "S ", agxbuse(&xbuf)); | |
^~~~~~~ | |
gvrender_core_dot.c: In function 'xdot_end_node': | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:186:31: note: in expansion of macro 'agxbuse' | |
agxset(n, xd->n_draw->index, agxbuse(xbufs[EMIT_NDRAW])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:192:33: note: in expansion of macro 'agxbuse' | |
agxset(n, xd->n_l_draw->index, agxbuse(xbufs[EMIT_NLABEL])); | |
^~~~~~~ | |
gvrender_core_dot.c: In function 'xdot_end_edge': | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:206:31: note: in expansion of macro 'agxbuse' | |
agxset(e, xd->e_draw->index, agxbuse(xbufs[EMIT_EDRAW])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:212:31: note: in expansion of macro 'agxbuse' | |
agxset(e, xd->t_draw->index, agxbuse(xbufs[EMIT_TDRAW])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:218:31: note: in expansion of macro 'agxbuse' | |
agxset(e, xd->h_draw->index, agxbuse(xbufs[EMIT_HDRAW])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:224:32: note: in expansion of macro 'agxbuse' | |
agxset(e, xd->e_l_draw->index,agxbuse(xbufs[EMIT_ELABEL])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:230:32: note: in expansion of macro 'agxbuse' | |
agxset(e, xd->tl_draw->index, agxbuse(xbufs[EMIT_TLABEL])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:236:32: note: in expansion of macro 'agxbuse' | |
agxset(e, xd->hl_draw->index, agxbuse(xbufs[EMIT_HLABEL])); | |
^~~~~~~ | |
gvrender_core_dot.c: In function 'xdot_end_cluster': | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:289:42: note: in expansion of macro 'agxbuse' | |
agxset(cluster_g, xd->g_draw->index, agxbuse(xbufs[EMIT_CDRAW])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:295:41: note: in expansion of macro 'agxbuse' | |
agxset(cluster_g, xd->g_l_draw->index, agxbuse(xbufs[EMIT_CLABEL])); | |
^~~~~~~ | |
gvrender_core_dot.c: In function 'xdot_end_graph': | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:436:31: note: in expansion of macro 'agxbuse' | |
agxset(g, xd->g_draw->index, agxbuse(xbufs[EMIT_GDRAW])); | |
^~~~~~~ | |
../../lib/graph/agxbuf.h:68:11: warning: right-hand operand of comma expression has no effect [-Wunused-value] | |
(int)(*(X)->ptr++ = ((unsigned char)C))) | |
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
../../lib/graph/agxbuf.h:74:21: note: in expansion of macro 'agxbputc' | |
#define agxbuse(X) (agxbputc(X,'\0'),(char*)((X)->ptr = (X)->buf)) | |
^~~~~~~~ | |
gvrender_core_dot.c:444:33: note: in expansion of macro 'agxbuse' | |
agxset(g, xd->g_l_draw->index, agxbuse(xbufs[EMIT_GLABEL])); | |
^~~~~~~ | |
CC gvrender_core_fig.lo | |
CC gvrender_core_map.lo | |
CC gvrender_core_ps.lo | |
CC gvrender_core_svg.lo | |
CC gvrender_core_tk.lo | |
gvrender_core_tk.c: In function 'tkgen_print_tags': | |
gvrender_core_tk.c:58:18: warning: variable 'ObjId' set but not used [-Wunused-but-set-variable] | |
unsigned int ObjId; | |
^~~~~ | |
gvrender_core_tk.c:57:21: warning: variable 'ObjPart' set but not used [-Wunused-but-set-variable] | |
char *ObjType, *ObjPart; | |
^~~~~~~ | |
CC gvrender_core_vml.lo | |
gvrender_core_vml.c: In function 'vml_ellipse': | |
gvrender_core_vml.c:452:38: warning: variable 'bottom' set but not used [-Wunused-but-set-variable] | |
double dx, dy, left, right, top, bottom; | |
^~~~~~ | |
gvrender_core_vml.c:452:26: warning: variable 'right' set but not used [-Wunused-but-set-variable] | |
double dx, dy, left, right, top, bottom; | |
^~~~~ | |
CC gvloadimage_core.lo | |
CCLD libgvplugin_core_C.la | |
CCLD libgvplugin_core.la | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core' | |
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz' | |
/bin/bash ../../libtool --mode=install /usr/bin/install -c libgvplugin_core.la '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz' | |
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.lai /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.la | |
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.a /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a | |
libtool: install: chmod 644 /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a | |
libtool: install: ranlib /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a | |
libtool: finish: PATH="/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/netCDF/4.6.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/MariaDB-connector-c/2.3.7/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LittleCMS/2.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/JasPer/2.0.14/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Ghostscript/9.27/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/bin:/opt/easybuild/software/Core/Java/11.0.2:/opt/easybuild/software/Core/Java/11.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/NASM/2.14.02/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tcl/8.6.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/GLib/2.60.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/gettext/0.19.8.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LLVM/7.0.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/nettle/3.4.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/fontconfig/2.13.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/freetype/2.9.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/expat/2.2.6/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/numactl/2.0.12/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/binutils/2.31.1/bin:/opt/easybuild/software/Core/GCCcore/8.2.0/bin:/opt/easybuild/EB-develop/easybuild-framework:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/src/cxx/generic_gcc/bin:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/bin:/opt/Singularity/latest/bin:/opt/Go/latest/bin:/home/davide/.bin:/opt/ssh-ident:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/davide/.go/bin:/sbin" ldconfig -n /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz | |
---------------------------------------------------------------------- | |
Libraries have been installed in: | |
/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz | |
If you ever happen to want to link against installed libraries | |
in a given directory, LIBDIR, you must either use libtool, and | |
specify the full pathname of the library, or use the `-LLIBDIR' | |
flag during linking and do at least one of the following: | |
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable | |
during execution | |
- add LIBDIR to the `LD_RUN_PATH' environment variable | |
during linking | |
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag | |
- have your system administrator add LIBDIR to `/etc/ld.so.conf' | |
See any operating system documentation about shared libraries for | |
more information, such as the ld(1) and ld.so(8) manual pages. | |
---------------------------------------------------------------------- | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/core' | |
Making install in dot_layout | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout' | |
CC gvplugin_dot_layout.lo | |
CC gvlayout_dot_layout.lo | |
CCLD libgvplugin_dot_layout_C.la | |
CCLD libgvplugin_dot_layout.la | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout' | |
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz' | |
/bin/bash ../../libtool --mode=install /usr/bin/install -c libgvplugin_dot_layout.la '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz' | |
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.lai /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.la | |
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.a /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a | |
libtool: install: chmod 644 /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a | |
libtool: install: ranlib /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a | |
libtool: finish: PATH="/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/netCDF/4.6.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/MariaDB-connector-c/2.3.7/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LittleCMS/2.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/JasPer/2.0.14/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Ghostscript/9.27/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/bin:/opt/easybuild/software/Core/Java/11.0.2:/opt/easybuild/software/Core/Java/11.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/NASM/2.14.02/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tcl/8.6.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/GLib/2.60.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/gettext/0.19.8.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LLVM/7.0.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/nettle/3.4.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/fontconfig/2.13.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/freetype/2.9.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/expat/2.2.6/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/numactl/2.0.12/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/binutils/2.31.1/bin:/opt/easybuild/software/Core/GCCcore/8.2.0/bin:/opt/easybuild/EB-develop/easybuild-framework:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/src/cxx/generic_gcc/bin:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/bin:/opt/Singularity/latest/bin:/opt/Go/latest/bin:/home/davide/.bin:/opt/ssh-ident:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/davide/.go/bin:/sbin" ldconfig -n /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz | |
---------------------------------------------------------------------- | |
Libraries have been installed in: | |
/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz | |
If you ever happen to want to link against installed libraries | |
in a given directory, LIBDIR, you must either use libtool, and | |
specify the full pathname of the library, or use the `-LLIBDIR' | |
flag during linking and do at least one of the following: | |
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable | |
during execution | |
- add LIBDIR to the `LD_RUN_PATH' environment variable | |
during linking | |
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag | |
- have your system administrator add LIBDIR to `/etc/ld.so.conf' | |
See any operating system documentation about shared libraries for | |
more information, such as the ld(1) and ld.so(8) manual pages. | |
---------------------------------------------------------------------- | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/dot_layout' | |
Making install in neato_layout | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout' | |
CC gvplugin_neato_layout.lo | |
CC gvlayout_neato_layout.lo | |
CCLD libgvplugin_neato_layout_C.la | |
CCLD libgvplugin_neato_layout.la | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout' | |
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz' | |
/bin/bash ../../libtool --mode=install /usr/bin/install -c libgvplugin_neato_layout.la '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz' | |
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.lai /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.la | |
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.a /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a | |
libtool: install: chmod 644 /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a | |
libtool: install: ranlib /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a | |
libtool: finish: PATH="/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/netCDF/4.6.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/MariaDB-connector-c/2.3.7/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LittleCMS/2.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/JasPer/2.0.14/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Ghostscript/9.27/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/bin:/opt/easybuild/software/Core/Java/11.0.2:/opt/easybuild/software/Core/Java/11.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/NASM/2.14.02/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tcl/8.6.9/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/GLib/2.60.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/gettext/0.19.8.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/LLVM/7.0.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/nettle/3.4.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/fontconfig/2.13.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/util-linux/2.33/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/freetype/2.9.1/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/expat/2.2.6/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/bin:/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/bin:/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/sbin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/hwloc/1.11.11/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/numactl/2.0.12/bin:/opt/easybuild/software/Compiler/GCCcore/8.2.0/binutils/2.31.1/bin:/opt/easybuild/software/Core/GCCcore/8.2.0/bin:/opt/easybuild/EB-develop/easybuild-framework:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/src/cxx/generic_gcc/bin:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/HEALPix/3.50/bin:/opt/Singularity/latest/bin:/opt/Go/latest/bin:/home/davide/.bin:/opt/ssh-ident:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/davide/.go/bin:/sbin" ldconfig -n /tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz | |
---------------------------------------------------------------------- | |
Libraries have been installed in: | |
/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz | |
If you ever happen to want to link against installed libraries | |
in a given directory, LIBDIR, you must either use libtool, and | |
specify the full pathname of the library, or use the `-LLIBDIR' | |
flag during linking and do at least one of the following: | |
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable | |
during execution | |
- add LIBDIR to the `LD_RUN_PATH' environment variable | |
during linking | |
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag | |
- have your system administrator add LIBDIR to `/etc/ld.so.conf' | |
See any operating system documentation about shared libraries for | |
more information, such as the ld(1) and ld.so(8) manual pages. | |
---------------------------------------------------------------------- | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin/neato_layout' | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin' | |
make[4]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin' | |
make[4]: Nothing to be done for 'install-exec-am'. | |
make[4]: Nothing to be done for 'install-data-am'. | |
make[4]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin' | |
make[2]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz/plugin' | |
make[2]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz' | |
make[3]: Entering directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz' | |
make[3]: Nothing to be done for 'install-exec-am'. | |
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/man/man7' | |
/usr/bin/install -c -m 644 graphviz.7 '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/man/man7' | |
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz' | |
/usr/bin/install -c -m 644 graphviz_version.h '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz' | |
/bin/mkdir -p '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/graphviz/doc' | |
/usr/bin/install -c -m 644 AUTHORS COPYING ChangeLog NEWS cpl1.0.txt '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/share/graphviz/doc' | |
make[3]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz' | |
make[2]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz' | |
make[1]: Leaving directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/graphviz' | |
cp: -r not specified; omitting directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/graphviz' | |
cp: -r not specified; omitting directory '/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/lib/pkgconfig' | |
checking for grep that handles long lines and -e... /bin/grep | |
checking for egrep... /bin/grep -E | |
checking for ANSI C header files... yes | |
checking for sys/types.h... yes | |
checking for sys/stat.h... yes | |
checking for stdlib.h... yes | |
checking for string.h... yes | |
checking for memory.h... yes | |
checking for strings.h... yes | |
checking for inttypes.h... yes | |
checking for stdint.h... yes | |
checking for unistd.h... yes | |
checking zlib.h usability... yes | |
checking zlib.h presence... yes | |
checking for zlib.h... yes | |
checking for deflateBound in -lz... yes | |
checking for stdbool.h that conforms to C99... yes | |
checking for _Bool... yes | |
checking for whether compiler has bool... yes | |
configure: Using the following compilation and linking flags for Rgraphviz | |
configure: PKG_CFLAGS= -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz | |
configure: PKG_LIBS=libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz | |
configure: GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 | |
configure: Compiling using Graphviz version: '2.28.0'. | |
configure: Using bundled Graphviz: 'TRUE'. | |
configure: creating ./config.status | |
config.status: creating R/graphviz_build_version.R | |
config.status: creating src/Makevars | |
** libs | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c LL_funcs.c -o LL_funcs.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c Rgraphviz.c -o Rgraphviz.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c RgraphvizInit.c -o RgraphvizInit.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c agopen.c -o agopen.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c agread.c -o agread.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c agwrite.c -o agwrite.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c bezier.c -o bezier.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c buildEdgeList.c -o buildEdgeList.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c buildNodeList.c -o buildNodeList.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c doLayout.c -o doLayout.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c graphvizVersion.c -o graphvizVersion.o | |
gcc -I"/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/include" -DNDEBUG -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/include -I/opt/easybuild/software/Core/Java/11.0.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/include -I/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/include -I/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include -I/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/include -I/tmp/eb-fP3wRz/RtmpIwbxob/R.INSTALL456e6e7a54ef/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fpic -O2 -ftree-vectorize -march=native -fno-math-errno -c init.c -o init.o | |
gcc -shared -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/lib -L/opt/easybuild/software/Core/GCCcore/8.2.0/lib64 -L/opt/easybuild/software/Core/GCCcore/8.2.0/lib -L/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5/lib -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/ScaLAPACK/2.0.2-OpenBLAS-0.3.5/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/X11/20190311/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/Mesa/19.0.1/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libGLU/9.0.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/cairo/1.16.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libreadline/8.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/ncurses/6.1/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/bzip2/1.0.6/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/XZ/5.2.4/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/SQLite/3.27.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/PCRE/8.43/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libpng/1.6.36/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libjpeg-turbo/2.0.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/LibTIFF/4.0.10/lib -L/opt/easybuild/software/Core/Java/11.0.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/Tk/8.6.9/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/cURL/7.63.0/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libxml2/2.9.8/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/GMP/6.1.2/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/NLopt/2.6.1/lib -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/FFTW/3.3.8/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/libsndfile/1.0.28/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/ICU/64.2/lib -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/HDF5/1.10.5/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/UDUNITS/2.2.26/lib -L/opt/easybuild/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/lib -L/opt/easybuild/software/Compiler/GCCcore/8.2.0/ImageMagick/7.0.8-46/lib -o Rgraphviz.so LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz -L/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R/3.6.0/lib/R/lib -lR | |
installing to /opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/00LOCK-Rgraphviz/00new/Rgraphviz/libs | |
** R | |
** inst | |
** byte-compile and prepare package for lazy loading | |
** help | |
*** installing help indices | |
** building package indices | |
** installing vignettes | |
** testing if installed package can be loaded from temporary location | |
Error: package or namespace load failed for ‘Rgraphviz’: | |
.onLoad failed in loadNamespace() for 'Rgraphviz', details: | |
call: value[[3L]](cond) | |
error: unable to load shared object '/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/00LOCK-Rgraphviz/00new/Rgraphviz/libs/Rgraphviz.so': | |
/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/00LOCK-Rgraphviz/00new/Rgraphviz/libs/Rgraphviz.so: undefined symbol: _ZGVbN2vv___pow_finite | |
Rgraphviz is unable to be loaded. This typically is a symptom of an | |
installation problem. From 2.x.x onwards, Graphviz ought to come | |
bundled with Rgraphviz. | |
If you are trying to use an external Graphviz, see additional | |
instructions in the 'README' file of the Rgraphviz 'source' | |
distribution, available at | |
http://bioconductor.org/packages/release/bioc/html/Rgraphviz.html | |
Ask further questions on the Bioconductor mailing list | |
http://bioconductor.org/docs/mailList.html | |
Rgraphviz is unable to be loaded. This typically is a symptom of an | |
installation problem. From 2.x.x onwards, Graphviz ought to come | |
bundled with Rgraphviz. | |
If you are trying to use an external Graphviz, see additional | |
instructions in the 'README' file of the Rgraphviz 'source' | |
distribution, available at | |
http://bioconductor.org/packages/release/bioc/html/Rgraphviz.html | |
Ask further questions on the Bioconductor mailing list | |
http://bioconductor.org/docs/mailList.html | |
Error: loading failed | |
Execution halted | |
ERROR: loading failed | |
(at easybuild/EB-develop/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output) | |
== 2019-08-15 14:16:40,968 easyblock.py:3053 WARNING build failed (first 300 chars): cmd " R CMD INSTALL /opt/easybuild/sources/r/R-bundle-Bioconductor/extensions/Rgraphviz_2.28.0.tar.gz --library=/opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/R-bundle-Bioconductor/3.9-R-3.6.0/ --no-clean-on-error " exited with exit code 1 and output: | |
* installing *source* package ‘R | |
== 2019-08-15 14:16:40,969 easyblock.py:295 INFO Closing log for application name R-bundle-Bioconductor version 3.9 |
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