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September 13, 2019 15:17
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(partial) EasyBuild log for failed build of /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/Octopus-9.1-foss-2019a.eb (PR #8906)
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== 2019-09-13 10:17:25,556 easyblock.py:279 INFO This is EasyBuild 4.0.0.dev0-rff5cd17b15e0aa9913ba1d5e6293ce7d5d502582 (framework: 4.0.0.dev0-re1adb9c9af3bfe0f1cc308a2a68068872fcbd4b1, easyblocks: 4.0.0.dev0-rff5cd17b15e0aa9913ba1d5e6293ce7d5d502582) on host cermis. | |
== 2019-09-13 10:17:25,556 easyblock.py:285 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/opt/easybuild/EB-develop/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.pyo) | |
== 2019-09-13 10:17:25,556 easyblock.py:840 INFO Build dir set to /tmp/Octopus/9.1/foss-2019a | |
== 2019-09-13 10:17:25,556 config.py:539 DEBUG software install path as specified by 'installpath_software': /opt/easybuild/software | |
== 2019-09-13 10:17:25,556 easyconfig.py:2310 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f99cfe2a590> | |
== 2019-09-13 10:17:25,556 toolchain.py:487 DEBUG Toolchain definition for {'full_mod_name': 'Core/foss/2019a', 'versionsuffix': '', 'version': '2019a', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2019a', 'hidden': False, 'parsed': True, 'system': True}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
== 2019-09-13 10:17:25,557 toolchain.py:59 DEBUG Obtained details for 'GCC' in toolchain '{'full_mod_name': 'Core/foss/2019a', 'versionsuffix': '', 'version': '2019a', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2019a', 'hidden': False, 'parsed': True, 'system': True}' from cache | |
== 2019-09-13 10:17:25,557 toolchain.py:125 DEBUG Found compilers [{'external_module_metadata': {}, 'short_mod_name': 'GCC/8.2.0-2.31.1', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCC', 'full_mod_name': 'Core/GCC/8.2.0-2.31.1', 'system': True, 'build_only': False, 'versionsuffix': '', 'version': '8.2.0-2.31.1', 'toolchain_inherited': True, 'hidden': False, 'external_module': False}] for toolchain foss ({'full_mod_name': 'Core/foss/2019a', 'versionsuffix': '', 'version': '2019a', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2019a', 'hidden': False, 'parsed': True, 'system': True}) | |
== 2019-09-13 10:17:25,557 toolchain.py:487 DEBUG Toolchain definition for {'full_mod_name': 'Core/foss/2019a', 'versionsuffix': '', 'version': '2019a', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2019a', 'hidden': False, 'parsed': True, 'system': True}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
== 2019-09-13 10:17:25,557 toolchain.py:59 DEBUG Obtained details for 'OpenMPI' in toolchain '{'full_mod_name': 'Core/foss/2019a', 'versionsuffix': '', 'version': '2019a', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2019a', 'hidden': False, 'parsed': True, 'system': True}' from cache | |
== 2019-09-13 10:17:25,557 easyconfig.py:2316 DEBUG Obtained subdir MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/Octopus/9.1 | |
== 2019-09-13 10:17:25,558 easyblock.py:900 INFO Software install dir set to /opt/easybuild/software/MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/Octopus/9.1 | |
== 2019-09-13 10:17:25,558 config.py:539 DEBUG modules install path as specified by 'installpath_modules': /opt/easybuild/modules | |
== 2019-09-13 10:17:25,558 easyblock.py:905 INFO Module install dir set to /opt/easybuild/modules/all | |
== 2019-09-13 10:17:25,558 easyblock.py:264 INFO Init completed for application name Octopus version 9.1 | |
== 2019-09-13 10:17:25,558 easyblock.py:3023 INFO Obtained application instance of for Octopus (easyblock: ConfigureMake) | |
== 2019-09-13 10:17:25,558 easyblock.py:3036 DEBUG Skip set to False | |
== 2019-09-13 10:17:25,558 templates.py:161 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f99cfe2a590> | |
== 2019-09-13 10:17:25,559 templates.py:188 DEBUG version found in easyconfig is 9.1 | |
== 2019-09-13 10:17:25,559 templates.py:242 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2019-09-13 10:17:25,559 templates.py:242 DEBUG name: github_account, config: %(namelower)s | |
== 2019-09-13 10:17:25,559 templates.py:242 DEBUG name: name, config: Octopus | |
== 2019-09-13 10:17:25,559 templates.py:242 DEBUG name: version, config: 9.1 | |
== 2019-09-13 10:17:25,559 templates.py:242 DEBUG name: versionsuffix, config: | |
== 2019-09-13 10:17:25,559 templates.py:242 DEBUG name: versionprefix, config: | |
== 2019-09-13 10:17:25,560 one.py:149 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2019-09-13 10:17:25,560 one.py:149 INFO Skipping reformatting value for parameter 'toolchainopts' | |
== 2019-09-13 10:17:25,561 easyconfig.py:1108 DEBUG Dumped easyconfig: easyblock = 'ConfigureMake' | |
name = 'Octopus' | |
version = '9.1' | |
homepage = 'http://octopus-code.org' | |
description = """Octopus is a scientific program aimed at the ab initio virtual experimentation | |
on a hopefully ever-increasing range of system types. Electrons are described quantum-mechanically | |
within density-functional theory (DFT), in its time-dependent form (TDDFT) when doing simulations | |
in time. Nuclei are described classically as point particles. | |
Electron-nucleus interaction is described within the pseudopotential approximation.""" | |
toolchain = {'name': 'foss', 'version': '2019a'} | |
toolchainopts = {'opt': True, 'usempi': True} | |
source_urls = ['http://www.tddft.org/programs/%(namelower)s/down.php?file=%(version)s/'] | |
sources = [SOURCELOWER_TAR_GZ] | |
checksums = ['62f73d92d2fc5ddf3554337da2333eb35a97db57088950f31eda6fa5e03d6a33'] | |
builddependencies = [ | |
('Perl', '5.28.1', '', ('GCCcore', '8.2.0')), | |
] | |
dependencies = [ | |
('libxc', '4.3.4', '', ('GCC', '8.2.0-2.31.1')), | |
('libvdwxc', '0.4.0'), | |
('PSolver', '1.7.7'), | |
('ETSF_IO', '1.0.4'), | |
('GSL', '2.5', '', ('GCC', '8.2.0-2.31.1')), | |
('ParMETIS', '4.0.3', '', ('gompi', '2019a')), | |
('arpack-ng', '3.6.2'), | |
('libgd', '2.2.5', '', ('GCCcore', '8.2.0')), | |
] | |
configopts = '--disable-openmp --enable-mpi --with-libxc-prefix=$EBROOTLIBXC --with-libvdwxc-prefix=$EBROOTLIBVDWXC --with-blas="-L$BLAS_LIB_DIR $LIBBLAS" --with-blacs="$EBROOTSCALAPACK/lib/libscalapack.a" --with-scalapack="$EBROOTSCALAPACK/lib/libscalapack.a" --with-netcdf-prefix=$EBROOTNETCDFMINFORTRAN --with-etsf-io-prefix=$EBROOTETSF_IO --with-fftw-prefix=$EBROOTFFTW --with-isf-prefix=$EBROOTPSOLVER FCFLAGS="$FCFLAGS -ffree-line-length-none" FCCPP="/lib/cpp -C -ffreestanding -Dvector=vector" ' | |
# Run only the short tests, as the full testsuite can take a lot of time. | |
runtest = 'MPIEXEC="`which mpirun` --bind-to none" check-short' | |
sanity_check_paths = { | |
'files': ['bin/%(namelower)s'], | |
'dirs': ['share/%(namelower)s'], | |
} | |
moduleclass = 'phys' | |
== 2019-09-13 10:17:25,561 filetools.py:1263 INFO Creating directory /tmp/eb-BI7h0Q/reprod_20190913101725_24373 (parents: True, set_gid: False, sticky: False) | |
== 2019-09-13 10:17:25,561 easyblock.py:3196 INFO Dumped easyconfig instance to /tmp/eb-BI7h0Q/reprod_20190913101725_24373/Octopus-9.1-foss-2019a.eb | |
== 2019-09-13 10:17:25,561 filetools.py:1263 INFO Creating directory /tmp/eb-BI7h0Q/reprod_20190913101725_24373/easyblocks (parents: True, set_gid: False, sticky: False) | |
== 2019-09-13 10:17:25,562 filetools.py:1733 INFO /opt/easybuild/EB-develop/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-BI7h0Q/reprod_20190913101725_24373/easyblocks/configuremake.py | |
== 2019-09-13 10:17:25,562 easyblock.py:3211 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-BI7h0Q/reprod_20190913101725_24373/easyblocks | |
== 2019-09-13 10:17:25,562 easyblock.py:1601 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2019-09-13 10:17:25,562 build_log.py:260 INFO building and installing MPI/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/Octopus/9.1... | |
== 2019-09-13 10:17:25,562 easyblock.py:2793 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
== 2019-09-13 10:17:25,562 build_log.py:260 INFO fetching files... | |
== 2019-09-13 10:17:25,562 easyblock.py:2801 INFO Starting fetch step | |
== 2019-09-13 10:17:25,563 templates.py:161 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f99cfe2a590> | |
== 2019-09-13 10:17:25,563 templates.py:188 DEBUG version found in easyconfig is 9.1 | |
== 2019-09-13 10:17:25,563 templates.py:242 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2019-09-13 10:17:25,563 templates.py:242 DEBUG name: github_account, config: %(namelower)s | |
== 2019-09-13 10:17:25,563 templates.py:242 DEBUG name: name, config: Octopus | |
== 2019-09-13 10:17:25,563 templates.py:242 DEBUG name: version, config: 9.1 | |
== 2019-09-13 10:17:25,563 templates.py:242 DEBUG name: versionsuffix, config: | |
== 2019-09-13 10:17:25,563 templates.py:242 DEBUG name: versionprefix, config: | |
== 2019-09-13 10:17:25,564 easyblock.py:2807 INFO Running method fetch_step part of step fetch | |
== 2019-09-13 10:17:25,564 easyblock.py:1682 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2019-09-13 10:17:25,564 filetools.py:404 INFO Command eb found at /opt/easybuild/EB-develop/easybuild-framework/eb | |
== 2019-09-13 10:17:25,564 tools.py:266 DEBUG Also considering installation prefix /opt/easybuild/EB-develop... | |
== 2019-09-13 10:17:25,564 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/ebfiles_repo/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,564 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,564 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-BI7h0Q/files_pr8906/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-BI7h0Q/fake_vsc_Uy42mv/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:271 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:275 DEBUG Added /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/EB-develop/easybuild-easyblocks/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/EB-develop/easybuild-framework/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,565 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/EB-develop/vsc-install/lib/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/EB-develop/vsc-base/lib/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/plat-x86_64-linux-gnu/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-tk/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-old/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-dynload/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python2.7/dist-packages/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,566 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,567 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,567 tools.py:271 DEBUG Checking for easybuild/easyconfigs at /opt/easybuild/EB-develop/easybuild/easyconfigs | |
== 2019-09-13 10:17:25,567 filetools.py:1263 INFO Creating directory /opt/easybuild/sources/o/Octopus (parents: True, set_gid: False, sticky: False) | |
== 2019-09-13 10:17:25,568 easyblock.py:739 DEBUG Trying to download file octopus-9.1.tar.gz from http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz ... | |
== 2019-09-13 10:17:25,568 filetools.py:509 DEBUG Trying to download octopus-9.1.tar.gz from http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz | |
== 2019-09-13 10:17:25,568 filetools.py:516 DEBUG Using timeout of 10 seconds for initiating download | |
== 2019-09-13 10:17:25,568 filetools.py:1291 DEBUG Not creating existing path /opt/easybuild/sources/o/Octopus | |
== 2019-09-13 10:17:28,814 filetools.py:564 WARNING IOError occurred while trying to download http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz: <urlopen error [Errno 113] No route to host> | |
== 2019-09-13 10:17:28,815 filetools.py:573 INFO Attempt 1 of downloading http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz failed, trying again... | |
== 2019-09-13 10:17:30,008 filetools.py:564 WARNING IOError occurred while trying to download http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz: <urlopen error [Errno 113] No route to host> | |
== 2019-09-13 10:17:30,008 filetools.py:573 INFO Attempt 2 of downloading http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz failed, trying again... | |
== 2019-09-13 10:17:31,184 filetools.py:564 WARNING IOError occurred while trying to download http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz: <urlopen error [Errno 113] No route to host> | |
== 2019-09-13 10:17:31,184 filetools.py:585 WARNING Download of http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz to /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz failed, done trying | |
== 2019-09-13 10:17:31,186 build_log.py:164 ERROR EasyBuild crashed with an error (at easybuild/EB-develop/easybuild-framework/easybuild/base/exceptions.py:124 in __init__): Couldn't find file octopus-9.1.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/o/Octopus/octopus-9.1.tar.gz, /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/Octopus/octopus-9.1.tar.gz, /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/octopus-9.1.tar.gz, /opt/easybuild/ebfiles_repo/o/Octopus/octopus-9.1.tar.gz, /opt/easybuild/ebfiles_repo/Octopus/octopus-9.1.tar.gz, /opt/easybuild/ebfiles_repo/octopus-9.1.tar.gz, /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs/o/Octopus/octopus-9.1.tar.gz, /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs/Octopus/octopus-9.1.tar.gz, /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs/octopus-9.1.tar.gz, /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/octopus-9.1.tar.gz, /tmp/eb-BI7h0Q/files_pr8906/Octopus/octopus-9.1.tar.gz, /tmp/eb-BI7h0Q/files_pr8906/octopus-9.1.tar.gz, /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs/o/Octopus/octopus-9.1.tar.gz, /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs/Octopus/octopus-9.1.tar.gz, /opt/easybuild/EB-develop/easybuild-easyconfigs/easybuild/easyconfigs/octopus-9.1.tar.gz, /opt/easybuild/sources/o/Octopus/octopus-9.1.tar.gz, /opt/easybuild/sources/Octopus/octopus-9.1.tar.gz, /opt/easybuild/sources/octopus-9.1.tar.gz, http://www.tddft.org/programs/octopus/down.php?file=9.1/octopus-9.1.tar.gz (at easybuild/EB-develop/easybuild-framework/easybuild/framework/easyblock.py:762 in obtain_file) | |
== 2019-09-13 10:17:31,186 easyblock.py:3053 WARNING build failed (first 300 chars): Couldn't find file octopus-9.1.tar.gz anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/o/Octopus/octopus-9.1.tar.gz, /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/Octopus/octopus-9.1.tar.gz, /tmp/eb-BI7h0Q/files_pr8906/o/Octopus/octopus-9.1 | |
== 2019-09-13 10:17:31,186 easyblock.py:294 INFO Closing log for application name Octopus version 9.1 |
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