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Last active Mar 16, 2017

# -*- coding: utf8 -*-
"""Convex factorization machines
Implements the solver by: Mathieu Blondel, Akinori Fujino, Naonori Ueda.
"Convex factorization machines". Proc. of ECML-PKDD 2015
# Author: Vlad Niculae <>
# License: Simplified BSD
# * implement warm starts and regularization paths
# * options to ignore the diagonal of Z / to constrain Z to be PSD
# * implement fully corrective refitting
# * diagonal refit every K iter (requires reasonable estimate of new eigval)
# * implement projected gradient baseline for comparison
import array
import numpy as np
import scipy.sparse as sp
from scipy.sparse.linalg import LinearOperator, eigsh
from sklearn.base import BaseEstimator, RegressorMixin
from sklearn.utils import check_random_state
from sklearn.linear_model import Ridge
from sklearn.linear_model.cd_fast import enet_coordinate_descent
from sklearn.metrics.pairwise import polynomial_kernel
from sklearn.utils.extmath import safe_sparse_dot
from sklearn.cross_validation import train_test_split
from sklearn.metrics import mean_squared_error
def _find_basis(X, residual, **kwargs):
def _create_mv(X, residual):
if sp.issparse(X):
def mv(p):
return X.T * (residual * (X * p))
def mv(p):
return, residual *, p))
return mv
n_features = X.shape[1]
grad = LinearOperator((n_features, n_features),
matvec=_create_mv(X, residual),
_, p = eigsh(grad, k=1, **kwargs)
return p.ravel()
class ConvexFM(BaseEstimator, RegressorMixin):
def __init__(self, alpha=1., beta=1., fit_intercept=False,
fit_linear=False, max_iter=200,
max_iter_inner=100, max_rank=None, warm_start=True,
tol=1e-3, refit_iter=1000, eigsh_kwargs={},
verbose=False, random_state=0):
"""Factorization machine with nuclear norm regularization.
minimizes 0.5 ∑(y - (b + w'x + <Z, xx'>))² + .5 * α||w||² + β||Z||_*
Z is implicitly stored as an eigendecomposition Z = P'ΛP
Implements the greedy coordinate descent solver from:
Convex Factorization Machines.
Mathieu Blondel, Akinori Fujino, Naonori Ueda.
Proceedings of ECML-PKDD 2015
alpha : float
L2 regulariation for linear term
beta : float,
Nuclear (trace) norm regularization for quadratic term
fit_intercept : bool, default: False
Whether to fit an intercept (b). Only used if ``fit_linear=True``.
fit_linear : bool, default: False
Whether to fit the linear term (b + w'x).
max_iter : int,
Number of alternative steps in the outer loop.
max_iter_inner : int,
Number of iterations when solving for Z
max_rank : int,
Budget for the representation of Z. Default: n_features
warm_start : bool, default: False
Warm starts, not fully implemented yet.
tol : bool,
Tolerance for all subproblems.
refit_iter : int,
Number of iterations for diagonal refitting (Lasso)
eigsh_kwargs : dict,
Arguments to pass to the ARPACK eigenproblem solver. Defaults are
``tol=tol`` and ``maxiter=5000``.
verbose : int,
Degree of verbosity.
random_state : int or np.random.RandomState,
Random number generator (used in diagonal refitting).
ridge_ : sklearn.linear_model.Ridge instance,
Fitted regressor for the linear part
lams_ : list,
Fitted eigenvalues of Z
P_ : list,
Fitted eigenvectors of Z
self.alpha = alpha
self.beta = beta
self.fit_intercept = fit_intercept
self.fit_linear = fit_linear
self.max_iter = max_iter
self.max_iter_inner = max_iter_inner
self.max_rank = max_rank
self.warm_start = warm_start
self.tol = tol
self.refit_iter = refit_iter
self.eigsh_kwargs = eigsh_kwargs
self.verbose = verbose
self.random_state = random_state
def predict_quadratic(self, X, P=None, lams=None):
"""Prediction from the quadratic term of the factorization machine.
Returns <Z, XX'>.
if P is None:
P = self.P_
lams = self.lams_
if not len(lams):
return 0
K = polynomial_kernel(X, np.array(P), degree=2, gamma=1, coef0=0)
return, lams)
def predict(self, X):
if self.fit_linear:
y_hat = self.ridge_.predict(X)
y_hat = np.zeros(X.shape[0])
y_hat += self.predict_quadratic(X)
return y_hat
def update_Z(self, X, y, verbose=False, sample_weight=None):
"""Greedy CD solver for the quadratic term of a factorization machine.
Solves 0.5 ||y - <Z, XX'>||^2_2 + ||Z||_*
Z implicitly stored as P'ΛP
n_samples, n_features = X.shape
rng = check_random_state(self.random_state)
P = self.P_
lams = self.lams_
old_loss = np.inf
max_rank = self.max_rank
if max_rank is None:
max_rank = n_features
#residual = self.predict_quadratic(X) - y # could optimize
#loss = self._loss(residual, sample_weight=sample_weight)
#rms = np.sqrt(np.mean((residual) ** 2))
#print("rank={} loss={}, RMSE={}".format(0, loss, rms))
for _ in range(self.max_iter_inner):
if self.rank_ >= max_rank:
residual = self.predict_quadratic(X, P, lams) - y # could optimize
if sample_weight is not None:
residual *= sample_weight
p = _find_basis(X, residual, **self.eigsh_kwargs)
# refit
refit_target = y.copy()
K = polynomial_kernel(X, np.array(P), degree=2, gamma=1, coef0=0)
if sample_weight is not None:
refit_target *= np.sqrt(sample_weight)
K *= np.sqrt(sample_weight)[:, np.newaxis]
K = np.asfortranarray(K)
lams_init = np.array(lams, dtype=np.double)
# minimizes 0.5 * ||y - K * lams||_2^2 + beta * ||w||_1
lams, _, _, _ = enet_coordinate_descent(
lams_init, self.beta, 0, K, refit_target,
max_iter=self.refit_iter, tol=self.tol, rng=rng, random=0,
P = [p for p, lam in zip(P, lams) if np.abs(lam) > 0]
lams = [lam for lam in lams if np.abs(lam) > 0]
self.rank_ = len(lams)
self.quadratic_trace_ = np.sum(np.abs(lams))
predict_quadratic = self.predict_quadratic(X, P, lams)
residual = y - predict_quadratic # y is already shifted
loss = self._loss(residual, sample_weight=sample_weight)
if verbose > 0:
rms = np.sqrt(np.mean((residual) ** 2))
print("rank={} loss={}, RMSE={}".format(self.rank_, loss, rms))
if np.abs(old_loss - loss) < self.tol:
old_loss = loss
self.P_ = P
self.lams_ = lams
def fit(self, X, y, sample_weight=None):
if not self.warm_start or not hasattr(self, 'P'):
self.P_ = []
self.lams_ = []
self.rank_ = 0
if sample_weight is not None:
assert len(sample_weight) == len(y)
# adjust eigsh defaults
if 'maxiter' not in self.eigsh_kwargs:
self.eigsh_kwargs['maxiter'] = 5000
if 'tol' not in self.eigsh_kwargs:
self.eigsh_kwargs['tol'] = self.tol
self.ridge_norm_sq_ = 0
self.quadratic_trace_ = 0
if self.fit_linear:
self.ridge_ = Ridge(alpha=0.5 * self.alpha,
old_loss = np.inf
quadratic_pred = 0
for i in range(self.max_iter):
# fit linear, y - quadratic_pred,
linear_pred = self.ridge_.predict(X)
self.ridge_norm_sq_ = np.sum(self.ridge_.coef_ ** 2)
#print(self._loss(y - (linear_pred + quadratic_pred),
# sample_weight=sample_weight))
# fit quadratic
self.update_Z(X, y - linear_pred, verbose=self.verbose - 1,
quadratic_pred = self.predict_quadratic(X)
loss = self._loss(y - (linear_pred + quadratic_pred),
if self.verbose:
print("Outer iter {} rank={} loss={}".format(
i, self.rank_, loss))
if np.abs(old_loss - loss) < self.tol:
old_loss = loss
self.update_Z(X, y, verbose=self.verbose - 1,
return self
def _loss(self, residual, sample_weight=None):
loss = residual ** 2
if sample_weight is not None:
loss *= sample_weight
loss = loss.sum() + self.alpha * self.ridge_norm_sq_
loss *= 0.5
loss += self.beta * self.quadratic_trace_
return loss
def make_multinomial_fm_dataset(n_samples, n_features, rank=5, length=50,
# Inspired by `sklearn.datasets.make_multilabel_classification`
rng = check_random_state(random_state)
X_indices = array.array('i')
X_indptr = array.array('i', [0])
for i in range(n_samples):
# pick a non-zero document length by rejection sampling
n_words = 0
while n_words == 0:
n_words = rng.poisson(length)
# generate a document of length n_words
words = rng.randint(n_features, size=n_words)
X_data = np.ones(len(X_indices), dtype=np.float64)
X = sp.csr_matrix((X_data, X_indices, X_indptr),
shape=(n_samples, n_features))
true_w = rng.randn(n_features)
true_eigv = rng.randn(rank)
true_P = rng.randn(rank, n_features)
y = safe_sparse_dot(X, true_w)
y += ConvexFM().predict_quadratic(X, true_P, true_eigv)
return X, y
if __name__ == '__main__':
n_samples, n_features = 1000, 50
rank = 5
length = 5
X, y = make_multinomial_fm_dataset(n_samples, n_features, rank, length,
X, X_val, y, y_val = train_test_split(X, y, test_size=0.25, random_state=0)
y += 0.01 * np.random.RandomState(0).randn(*y.shape)
# try ridge
from sklearn.linear_model import RidgeCV
ridge = RidgeCV(alphas=np.logspace(-4, 4, num=9, base=10),
fit_intercept=False), y)
y_val_pred = ridge.predict(X_val)
print('RidgeCV validation RMSE={}'.format(
np.sqrt(mean_squared_error(y_val, y_val_pred))))
# convex factorization machine path
fm = ConvexFM(fit_linear=True, warm_start=False, max_iter=20, tol=1e-4,
max_iter_inner=50, fit_intercept=True,
eigsh_kwargs={'tol': 0.1})
if True:
for alpha in (0.01, 0.1, 1, 10):
for beta in (10000, 500, 150, 100, 50, 1, 0.001):
fm.set_params(alpha=alpha, beta=beta), y)
y_val_pred = fm.predict(X_val)
print("α={} β={}, rank={}, validation RMSE={:.2f}".format(
np.sqrt(mean_squared_error(y_val, y_val_pred))))
if False:
fm.set_params(alpha=0.1, beta=1, fit_linear=True)
import scipy.sparse as sp[X, X]), np.concatenate([y, y]))
y_val_pred = fm.predict(X_val)
print("FM rank={}, validation RMSE={:.2f}".format(
np.sqrt(mean_squared_error(y_val, y_val_pred))))
fm.set_params(beta=1.), y, sample_weight=2 * np.ones_like(y))
y_val_pred = fm.predict(X_val)
print("FM rank={}, validation RMSE={:.2f}".format(
np.sqrt(mean_squared_error(y_val, y_val_pred))))
RidgeCV validation RMSE=13.666460000950694
α=0.01 β=10000, rank=0, validation RMSE=13.84
α=0.01 β=500, rank=15, validation RMSE=8.78
α=0.01 β=150, rank=26, validation RMSE=4.86
α=0.01 β=100, rank=39, validation RMSE=4.47
α=0.01 β=50, rank=45, validation RMSE=4.51
α=0.01 β=1, rank=47, validation RMSE=5.62
α=0.01 β=0.001, rank=50, validation RMSE=13.48
α=0.1 β=10000, rank=0, validation RMSE=13.84
α=0.1 β=500, rank=13, validation RMSE=8.79
α=0.1 β=150, rank=29, validation RMSE=4.89
α=0.1 β=100, rank=28, validation RMSE=4.39
α=0.1 β=50, rank=36, validation RMSE=4.54
α=0.1 β=1, rank=32, validation RMSE=5.54
α=0.1 β=0.001, rank=50, validation RMSE=11.96
α=1 β=10000, rank=0, validation RMSE=13.82
α=1 β=500, rank=27, validation RMSE=8.74
α=1 β=150, rank=29, validation RMSE=5.07
α=1 β=100, rank=33, validation RMSE=4.59
α=1 β=50, rank=37, validation RMSE=4.48
α=1 β=1, rank=23, validation RMSE=5.48
α=1 β=0.001, rank=50, validation RMSE=12.03
α=10 β=10000, rank=0, validation RMSE=13.67
α=10 β=500, rank=14, validation RMSE=8.42
α=10 β=150, rank=27, validation RMSE=4.92
α=10 β=100, rank=40, validation RMSE=4.34
α=10 β=50, rank=36, validation RMSE=4.61
α=10 β=1, rank=33, validation RMSE=6.00
α=10 β=0.001, rank=50, validation RMSE=13.32
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