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(partial) EasyBuild log for failed build of /tmp/eb-NhI7V1/files_pr6553/s/shovill/shovill-0.9.0-foss-2018a-Python-2.7.14.eb (PR #6553)
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shovill-0.9.0-foss-2018a-Python-2.7.14_partial.log
HDF5/1.10.1-foss-2018a
HTSeq/
HTSeq/0.10.0-foss-2018a-Python-2.7.14
HTSlib/
HTSlib/1.9-GCC-6.4.0-2.28
HarfBuzz/
HarfBuzz/1.7.5-foss-2018a
ICU/
ICU/61.1-GCCcore-6.4.0
IPython/
IPython/5.7.0-foss-2018a-Python-2.7.14
JUnit/
JUnit/4.12-Java-1.8.0_162
JasPer/
JasPer/2.0.14-GCCcore-6.4.0
Java/
Java/1.8.0_162
Java/1.8.0_172
Keras/
Keras/2.2.0-foss-2018a-Python-3.6.4
LAME/
LAME/3.100-GCCcore-6.4.0
LLVM/
LLVM/5.0.1-GCCcore-6.4.0
LLVM/6.0.0-GCCcore-7.3.0
LMDB/
LMDB/0.9.21-GCCcore-6.4.0
LibTIFF/
LibTIFF/4.0.9-GCCcore-6.4.0
LibUUID/
LibUUID/1.0.3-GCCcore-7.3.0
Lighter/
Lighter/1.1.1-foss-2018a
M4/
M4/1.4.17-foss-2016b
M4/1.4.17-GCC-4.8.4
M4/1.4.17-GCC-4.9.3-2.25
M4/1.4.17-GCC-5.4.0-2.26
M4/1.4.17-GCCcore-4.9.3
M4/1.4.17-GCCcore-5.4.0
M4/1.4.17
M4/1.4.18-GCCcore-6.3.0
M4/1.4.18-GCCcore-6.4.0
M4/1.4.18-GCCcore-7.3.0
M4/1.4.18-GCCcore-8.1.0
M4/1.4.18
MEGAHIT/
MEGAHIT/1.1.3-foss-2018a-Python-2.7.14
METIS/
METIS/5.1.0-GCCcore-6.4.0
Mako/
Mako/1.0.7-foss-2018a-Python-2.7.14
Mako/1.0.7-foss-2018b-Python-2.7.15
Mako/1.0.7-fosscuda-2018a-Python-2.7.14
Mako/1.0.7-GCCcore-6.4.0-Python-2.7.14-bare
Mash/
Mash/2.0-foss-2018a
Mesa/
Mesa/17.3.6-foss-2018a
Mesa/17.3.6-fosscuda-2018a
Mesa/17.3.6-GCCcore-6.4.0
Mesa/18.1.1-foss-2018b
Molden/
Molden/5.8-foss-2018a
Mono/
Mono/5.10.0.160-foss-2018a
NASM/
NASM/2.12.02-foss-2016b
NASM/2.13.01-GCCcore-6.4.0
NASM/2.13.03-GCCcore-6.4.0
NGS/
NGS/2.9.1-foss-2018a-Java-1.8.0_162
NLopt/
NLopt/2.4.2-foss-2018a
Octave/
Octave/4.2.2-foss-2018a
OpenBLAS/
OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0
OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0
OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0
OpenBLAS/0.2.20-GCC-6.4.0-2.28
OpenBLAS/0.3.1-GCC-7.3.0-2.30
OpenMPI/
OpenMPI/1.8.4-GCC-4.8.4
OpenMPI/1.10.3-GCC-5.4.0-2.26
OpenMPI/2.0.2-GCC-6.3.0-2.27
OpenMPI/2.1.1-GCC-6.4.0-2.28
OpenMPI/2.1.2-GCC-6.4.0-2.28
OpenMPI/2.1.2-gcccuda-2018a
OpenMPI/3.1.0-GCC-7.3.0-2.30
OpenMPI/3.1.1-GCC-7.3.0-2.30
OpenMPI/3.1.1-gcccuda-2018b
OpenPGM/
OpenPGM/5.2.122-GCCcore-6.4.0
PCRE/
PCRE/8.39-foss-2016b
PCRE/8.41-GCCcore-6.4.0
PEAR/
PEAR/0.9.11-foss-2018a
PLUMED/
PLUMED/2.4.2-foss-2018b
PROJ/
PROJ/5.0.0-foss-2018a
Pango/
Pango/1.41.1-foss-2018a
Perl/
Perl/5.26.1-foss-2018a
Perl/5.26.1-GCCcore-6.4.0
Perl/5.28.0-GCCcore-7.3.0
Pilon/
Pilon/1.22-Java-1.8.0_162
Pindel/
Pindel/0.2.5b9-20170508-GCC-6.4.0-2.28
PyQt/
PyQt/4.12.1-foss-2018a-Python-2.7.14
PyYAML/
PyYAML/3.12-foss-2018a-Python-3.6.4
PyZMQ/
PyZMQ/17.0.0-foss-2018a-Python-2.7.14-zmq4
Pysam/
Pysam/0.14.1-foss-2018a-Python-2.7.14
Python/
Python/2.7.14-foss-2018a
Python/2.7.14-fosscuda-2018a
Python/2.7.14-GCCcore-6.4.0-bare
Python/2.7.15-foss-2018b
Python/2.7.15-fosscuda-2018b
Python/2.7.15-GCCcore-7.3.0-bare
Python/3.6.4-foss-2018a
Python/3.6.4-fosscuda-2018a
Python/3.6.6-foss-2018b
Python/3.7.0-foss-2018b
Qhull/
Qhull/2015.2-GCCcore-6.4.0
Qt/
Qt/4.8.7-foss-2018a
Qt5/
Qt5/5.10.1-foss-2018a
Qt5/5.10.1-GCCcore-6.4.0
R/
R/3.4.4-foss-2018a-X11-20180131
RELION/
RELION/3.0_beta.2018.08.02-fosscuda-2018a
SAMtools/
SAMtools/0.1.19-foss-2016b
SAMtools/1.7-foss-2018a
SIP/
SIP/4.19.8-foss-2018a-Python-2.7.14
SKESA/
SKESA/2.9.1-foss-2018a
SPAdes/
SPAdes/3.12.0-foss-2018a
SQLite/
SQLite/3.13.0-foss-2016b
SQLite/3.20.1-GCCcore-6.4.0
SQLite/3.21.0-GCCcore-6.4.0
SQLite/3.24.0-GCCcore-7.3.0
SWIG/
SWIG/3.0.12-foss-2018a-Python-2.7.14
SWIG/3.0.12-foss-2018a-Python-3.6.4
ScaLAPACK/
ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0
ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0
ScaLAPACK/2.0.2-gompi-2017b-OpenBLAS-0.2.20
ScaLAPACK/2.0.2-gompi-2018a-OpenBLAS-0.2.20
ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1
ScaLAPACK/2.0.2-gompic-2018a-OpenBLAS-0.2.20
ScaLAPACK/2.0.2-gompic-2018b-OpenBLAS-0.3.1
SuiteSparse/
SuiteSparse/5.1.2-foss-2018a-METIS-5.1.0
Szip/
Szip/2.1.1-GCCcore-6.3.0
Szip/2.1.1-GCCcore-6.4.0
Tcl/
Tcl/8.6.5-foss-2016b
Tcl/8.6.7-GCCcore-6.4.0
Tcl/8.6.8-GCCcore-6.4.0
Tcl/8.6.8-GCCcore-7.3.0
TensorFlow/
TensorFlow/1.6.0-foss-2018a-Python-3.6.4
TensorFlow/1.8.0-foss-2018a-Python-3.6.4
Theano/
Theano/1.0.2-foss-2018a-Python-3.6.4
Tk/
Tk/8.6.8-foss-2018a
Tkinter/
Tkinter/2.7.14-foss-2018a-Python-2.7.14
Trimmomatic/
Trimmomatic/0.38-Java-1.8.0_162
Velvet/
Velvet/1.2.10-foss-2018a-mt-kmer_191
X11/
X11/20180131-GCCcore-6.4.0
X11/20180604-GCCcore-7.3.0
XML-Parser/
XML-Parser/2.44_01-GCCcore-6.4.0-Perl-5.26.1
XML-Parser/2.44_01-GCCcore-7.3.0-Perl-5.28.0
XZ/
XZ/5.2.3-GCCcore-6.4.0
XZ/5.2.4-GCCcore-7.3.0
Yasm/
Yasm/1.3.0-GCCcore-6.4.0
ZeroMQ/
ZeroMQ/4.2.5-foss-2018a
ant/
ant/1.10.1-Java-1.8.0_162
arpack-ng/
arpack-ng/3.5.0-foss-2018a
beagle-lib/
beagle-lib/3.0.1-foss-2018a
binutils/
binutils/2.25-GCCcore-4.9.3
binutils/2.25
binutils/2.26-GCCcore-5.4.0
binutils/2.26
binutils/2.27-GCCcore-6.3.0
binutils/2.27
binutils/2.28-GCCcore-6.3.0
binutils/2.28-GCCcore-6.4.0
binutils/2.28
binutils/2.30-GCCcore-7.3.0
binutils/2.30-GCCcore-8.1.0
binutils/2.30
bzip2/
bzip2/1.0.6-foss-2016b
bzip2/1.0.6-GCCcore-6.3.0
bzip2/1.0.6-GCCcore-6.4.0
bzip2/1.0.6-GCCcore-7.3.0
cURL/
cURL/7.58.0-GCCcore-6.4.0
cairo/
cairo/1.14.12-GCCcore-6.4.0
cuDNN/
cuDNN/7.0.5.15-fosscuda-2018a
cuDNN/7.1.4.18-fosscuda-2018b
expat/
expat/2.2.5-GCCcore-6.4.0
expat/2.2.5-GCCcore-7.3.0
file/
file/5.33-GCCcore-6.4.0
flex/
flex/2.5.39-GCCcore-4.9.3
flex/2.5.39
flex/2.6.0-GCCcore-5.4.0
flex/2.6.0
flex/2.6.3-GCCcore-6.3.0
flex/2.6.3
flex/2.6.4-GCCcore-6.4.0
flex/2.6.4-GCCcore-7.3.0
flex/2.6.4-GCCcore-8.1.0
flex/2.6.4
fontconfig/
fontconfig/2.12.6-GCCcore-6.4.0
fontconfig/2.13.0-GCCcore-7.3.0
foss/
foss/2016b
foss/2017a
foss/2017b
foss/2018a
foss/2018b
fosscuda/
fosscuda/2018a
fosscuda/2018b
freeglut/
freeglut/3.0.0-foss-2018a
freetype/
freetype/2.9-GCCcore-6.4.0
freetype/2.9.1-GCCcore-7.3.0
gc/
gc/7.6.4-GCCcore-7.3.0
gcccuda/
gcccuda/2018a
gcccuda/2018b
gettext/
gettext/0.19.8.1-GCCcore-6.4.0-libxml2-2.9.7
gettext/0.19.8.1-GCCcore-6.4.0
gettext/0.19.8.1-GCCcore-7.3.0
gettext/0.19.8.1
gnuplot/
gnuplot/5.2.2-foss-2018a
gompi/
gompi/1.7.20
gompi/2016b
gompi/2017a
gompi/2017b
gompi/2018a
gompi/2018b
gompic/
gompic/2018a
gompic/2018b
goolf/
goolf/1.7.20
gperf/
gperf/3.1-GCCcore-6.4.0
gperf/3.1-GCCcore-7.3.0
h5py/
h5py/2.7.1-foss-2018a-Python-3.6.4
help2man/
help2man/1.47.4-GCCcore-6.3.0
help2man/1.47.4-GCCcore-6.4.0
help2man/1.47.4-GCCcore-7.3.0
help2man/1.47.4
help2man/1.47.6-GCCcore-8.1.0
hwloc/
hwloc/1.10.1-GCC-4.8.4
hwloc/1.11.2-GCC-4.9.3-2.25
hwloc/1.11.3-GCC-5.4.0-2.26
hwloc/1.11.5-GCC-6.3.0-2.27
hwloc/1.11.7-GCCcore-6.4.0
hwloc/1.11.8-GCCcore-6.4.0
hwloc/1.11.10-GCCcore-7.3.0
intltool/
intltool/0.51.0-GCCcore-6.4.0-Perl-5.26.1
intltool/0.51.0-GCCcore-7.3.0-Perl-5.28.0
libGLU/
libGLU/9.0.0-foss-2018a
libGLU/9.0.0-fosscuda-2018a
libGLU/9.0.0-GCCcore-6.4.0
libcerf/
libcerf/1.5-GCCcore-6.4.0
libdrm/
libdrm/2.4.91-GCCcore-6.4.0
libdrm/2.4.92-GCCcore-7.3.0
libffi/
libffi/3.2.1-foss-2016b
libffi/3.2.1-GCCcore-5.4.0
libffi/3.2.1-GCCcore-6.3.0
libffi/3.2.1-GCCcore-6.4.0
libffi/3.2.1-GCCcore-7.3.0
libgd/
libgd/2.2.5-GCCcore-6.4.0
libjpeg-turbo/
libjpeg-turbo/1.5.0-foss-2016b
libjpeg-turbo/1.5.2-GCCcore-6.4.0
libjpeg-turbo/1.5.3-GCCcore-6.4.0
libmatheval/
libmatheval/1.1.11-GCCcore-7.3.0
libpng/
libpng/1.6.26-foss-2016b
libpng/1.6.34-GCCcore-6.4.0
libpng/1.6.34-GCCcore-7.3.0
libreadline/
libreadline/6.3-foss-2016b
libreadline/7.0-GCCcore-6.4.0
libreadline/7.0-GCCcore-7.3.0
libsndfile/
libsndfile/1.0.28-GCCcore-6.4.0
libsodium/
libsodium/1.0.16-GCCcore-6.4.0
libtool/
libtool/2.4.5-GCC-4.8.4
libtool/2.4.6-foss-2016b
libtool/2.4.6-GCC-4.9.3-2.25
libtool/2.4.6-GCC-5.4.0-2.26
libtool/2.4.6-GCCcore-6.3.0
libtool/2.4.6-GCCcore-6.4.0
libtool/2.4.6-GCCcore-7.3.0
libtool/2.4.6
libunistring/
libunistring/0.9.10-GCCcore-7.3.0
libxml2/
libxml2/2.9.4-GCCcore-6.4.0
libxml2/2.9.7-GCCcore-6.4.0
libxml2/2.9.8-GCCcore-7.3.0
libyaml/
libyaml/0.1.7-GCCcore-6.4.0
lpsolve/
lpsolve/5.5.2.5-foss-2018a
matplotlib/
matplotlib/2.1.2-foss-2018a-Python-2.7.14
mordecai/
mordecai/2.0.1-foss-2018a-Python-3.6.4
motif/
motif/2.3.8-foss-2018a
ncbi-vdb/
ncbi-vdb/2.9.1-1-foss-2018a
ncurses/
ncurses/6.0-foss-2016b
ncurses/6.0-GCCcore-6.4.0
ncurses/6.0
ncurses/6.1-GCCcore-7.3.0
netCDF/
netCDF/4.6.0-foss-2018a
netCDF-Fortran/
netCDF-Fortran/4.4.4-foss-2018a
nettle/
nettle/3.4-foss-2018a
nettle/3.4-foss-2018b
nettle/3.4-GCCcore-6.4.0
numactl/
numactl/2.0.10-GCC-4.8.4
numactl/2.0.11-GCC-4.9.3-2.25
numactl/2.0.11-GCC-5.4.0-2.26
numactl/2.0.11-GCC-6.3.0-2.27
numactl/2.0.11-GCCcore-6.4.0
numactl/2.0.11-GCCcore-7.3.0
opencv_contrib/
opencv_contrib/3.4.1-foss-2018a-Python-3.6.4
pigz/
pigz/2.4-foss-2018a
pixman/
pixman/0.34.0-GCCcore-6.4.0
pkg-config/
pkg-config/0.29.2-GCCcore-6.4.0
pkg-config/0.29.2-GCCcore-7.3.0
pkgconfig/
pkgconfig/1.3.1-foss-2018a-Python-3.6.4
qrupdate/
qrupdate/1.1.2-foss-2018a
seqtk/
seqtk/1.3-foss-2018a
setuptools/
setuptools/39.1.0-GCCcore-6.4.0-Python-2.7.14-bare
texinfo/
texinfo/6.5-GCCcore-6.4.0
util-linux/
util-linux/2.31.1-GCCcore-6.4.0
vsc-base/
vsc-base/2.8.0
vsc-base/2.8.1
vsc-install/
vsc-install/0.11.1
vsc-install/0.11.2
vsc-mympirun/
vsc-mympirun/4.1.4
vsc-mympirun/4.1.5
wheel/
wheel/0.30.0-foss-2018a-Python-3.6.4
wheel/0.31.0-foss-2018a-Python-3.6.4
wheel/0.31.0-fosscuda-2018a-Python-3.6.4
wheel/0.31.1-fosscuda-2018b-Python-2.7.15
x264/
x264/20180128-GCCcore-6.4.0
x265/
x265/2.6-GCCcore-6.4.0
xbitmaps/
xbitmaps/1.1.1
xprop/
xprop/1.2.2-GCCcore-6.4.0-X11-20180131
zlib/
zlib/1.2.8-foss-2016b
zlib/1.2.8-GCCcore-4.9.3
zlib/1.2.8-GCCcore-5.4.0
zlib/1.2.8
zlib/1.2.11-GCCcore-6.3.0
zlib/1.2.11-GCCcore-6.4.0
zlib/1.2.11-GCCcore-7.3.0
zlib/1.2.11-GCCcore-8.1.0
zlib/1.2.11
/usr/share/lmod/lmod/modulefiles/Core:
lmod/
lmod/6.5.1
settarg/
settarg/6.5.1
== 2018-08-21 21:36:51,686 modules.py:1137 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse --show-hidden avail ' ran fine
== 2018-08-21 21:36:51,687 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2018-08-21 21:36:51,688 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2018-08-21 21:36:51,688 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-08-21 21:36:51,689 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2018-08-21 21:36:51,697 modules.py:452 DEBUG 'module available ' gave 430 answers: ['ANTLR/2.7.7-foss-2018a-Python-2.7.14', 'ARAGORN/1.2.38-foss-2016b', 'ATK/2.28.1-foss-2018a', 'AUGUSTUS/3.3-foss-2018a', 'Armadillo/8.400.0-foss-2018a', 'Autoconf/2.69', 'Autoconf/2.69-GCC-4.8.4', 'Autoconf/2.69-GCC-4.9.3-2.25', 'Autoconf/2.69-GCC-5.4.0-2.26', 'Autoconf/2.69-GCCcore-6.3.0', 'Autoconf/2.69-GCCcore-6.4.0', 'Autoconf/2.69-GCCcore-7.3.0', 'Autoconf/2.69-foss-2016b', 'Automake/1.15', 'Automake/1.15-GCC-4.8.4', 'Automake/1.15-GCC-4.9.3-2.25', 'Automake/1.15-GCC-5.4.0-2.26', 'Automake/1.15-GCCcore-6.3.0', 'Automake/1.15-foss-2016b', 'Automake/1.15.1-GCCcore-6.4.0', 'Automake/1.16.1-GCCcore-7.3.0', 'Autotools/20150215', 'Autotools/20150215-GCC-4.9.3-2.25', 'Autotools/20150215-GCC-5.4.0-2.26', 'Autotools/20150215-GCCcore-6.3.0', 'Autotools/20150215-foss-2016b', 'Autotools/20170619-GCCcore-6.4.0', 'Autotools/20180311-GCCcore-7.3.0', 'BEDTools/2.27.1-GCCcore-6.4.0', 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== 2018-08-21 21:36:51,698 modules.py:456 DEBUG Cached result for 'module avail' with key '('MODULEPATH=/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', '--show-hidden')': ['ANTLR/2.7.7-foss-2018a-Python-2.7.14', 'ARAGORN/1.2.38-foss-2016b', 'ATK/2.28.1-foss-2018a', 'AUGUSTUS/3.3-foss-2018a', 'Armadillo/8.400.0-foss-2018a', 'Autoconf/2.69', 'Autoconf/2.69-GCC-4.8.4', 'Autoconf/2.69-GCC-4.9.3-2.25', 'Autoconf/2.69-GCC-5.4.0-2.26', 'Autoconf/2.69-GCCcore-6.3.0', 'Autoconf/2.69-GCCcore-6.4.0', 'Autoconf/2.69-GCCcore-7.3.0', 'Autoconf/2.69-foss-2016b', 'Automake/1.15', 'Automake/1.15-GCC-4.8.4', 'Automake/1.15-GCC-4.9.3-2.25', 'Automake/1.15-GCC-5.4.0-2.26', 'Automake/1.15-GCCcore-6.3.0', 'Automake/1.15-foss-2016b', 'Automake/1.15.1-GCCcore-6.4.0', 'Automake/1.16.1-GCCcore-7.3.0', 'Autotools/20150215', 'Autotools/20150215-GCC-4.9.3-2.25', 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'flex/2.6.0-GCCcore-5.4.0', 'flex/2.6.3', 'flex/2.6.3-GCCcore-6.3.0', 'flex/2.6.4', 'flex/2.6.4-GCCcore-6.4.0', 'flex/2.6.4-GCCcore-7.3.0', 'flex/2.6.4-GCCcore-8.1.0', 'fontconfig/2.12.6-GCCcore-6.4.0', 'fontconfig/2.13.0-GCCcore-7.3.0', 'foss/2016b', 'foss/2017a', 'foss/2017b', 'foss/2018a', 'foss/2018b', 'fosscuda/2018a', 'fosscuda/2018b', 'freeglut/3.0.0-foss-2018a', 'freetype/2.9-GCCcore-6.4.0', 'freetype/2.9.1-GCCcore-7.3.0', 'gc/7.6.4-GCCcore-7.3.0', 'gcccuda/2018a', 'gcccuda/2018b', 'gettext/0.19.8.1', 'gettext/0.19.8.1-GCCcore-6.4.0', 'gettext/0.19.8.1-GCCcore-6.4.0-libxml2-2.9.7', 'gettext/0.19.8.1-GCCcore-7.3.0', 'gnuplot/5.2.2-foss-2018a', 'gompi/1.7.20', 'gompi/2016b', 'gompi/2017a', 'gompi/2017b', 'gompi/2018a', 'gompi/2018b', 'gompic/2018a', 'gompic/2018b', 'goolf/1.7.20', 'gperf/3.1-GCCcore-6.4.0', 'gperf/3.1-GCCcore-7.3.0', 'h5py/2.7.1-foss-2018a-Python-3.6.4', 'help2man/1.47.4', 'help2man/1.47.4-GCCcore-6.3.0', 'help2man/1.47.4-GCCcore-6.4.0', 'help2man/1.47.4-GCCcore-7.3.0', 'help2man/1.47.6-GCCcore-8.1.0', 'hwloc/1.10.1-GCC-4.8.4', 'hwloc/1.11.10-GCCcore-7.3.0', 'hwloc/1.11.2-GCC-4.9.3-2.25', 'hwloc/1.11.3-GCC-5.4.0-2.26', 'hwloc/1.11.5-GCC-6.3.0-2.27', 'hwloc/1.11.7-GCCcore-6.4.0', 'hwloc/1.11.8-GCCcore-6.4.0', 'intltool/0.51.0-GCCcore-6.4.0-Perl-5.26.1', 'intltool/0.51.0-GCCcore-7.3.0-Perl-5.28.0', 'libGLU/9.0.0-GCCcore-6.4.0', 'libGLU/9.0.0-foss-2018a', 'libGLU/9.0.0-fosscuda-2018a', 'libcerf/1.5-GCCcore-6.4.0', 'libdrm/2.4.91-GCCcore-6.4.0', 'libdrm/2.4.92-GCCcore-7.3.0', 'libffi/3.2.1-GCCcore-5.4.0', 'libffi/3.2.1-GCCcore-6.3.0', 'libffi/3.2.1-GCCcore-6.4.0', 'libffi/3.2.1-GCCcore-7.3.0', 'libffi/3.2.1-foss-2016b', 'libgd/2.2.5-GCCcore-6.4.0', 'libjpeg-turbo/1.5.0-foss-2016b', 'libjpeg-turbo/1.5.2-GCCcore-6.4.0', 'libjpeg-turbo/1.5.3-GCCcore-6.4.0', 'libmatheval/1.1.11-GCCcore-7.3.0', 'libpng/1.6.26-foss-2016b', 'libpng/1.6.34-GCCcore-6.4.0', 'libpng/1.6.34-GCCcore-7.3.0', 'libreadline/6.3-foss-2016b', 'libreadline/7.0-GCCcore-6.4.0', 'libreadline/7.0-GCCcore-7.3.0', 'libsndfile/1.0.28-GCCcore-6.4.0', 'libsodium/1.0.16-GCCcore-6.4.0', 'libtool/2.4.5-GCC-4.8.4', 'libtool/2.4.6', 'libtool/2.4.6-GCC-4.9.3-2.25', 'libtool/2.4.6-GCC-5.4.0-2.26', 'libtool/2.4.6-GCCcore-6.3.0', 'libtool/2.4.6-GCCcore-6.4.0', 'libtool/2.4.6-GCCcore-7.3.0', 'libtool/2.4.6-foss-2016b', 'libunistring/0.9.10-GCCcore-7.3.0', 'libxml2/2.9.4-GCCcore-6.4.0', 'libxml2/2.9.7-GCCcore-6.4.0', 'libxml2/2.9.8-GCCcore-7.3.0', 'libyaml/0.1.7-GCCcore-6.4.0', 'lmod/6.5.1', 'lpsolve/5.5.2.5-foss-2018a', 'matplotlib/2.1.2-foss-2018a-Python-2.7.14', 'mordecai/2.0.1-foss-2018a-Python-3.6.4', 'motif/2.3.8-foss-2018a', 'ncbi-vdb/2.9.1-1-foss-2018a', 'ncurses/6.0', 'ncurses/6.0-GCCcore-6.4.0', 'ncurses/6.0-foss-2016b', 'ncurses/6.1-GCCcore-7.3.0', 'netCDF-Fortran/4.4.4-foss-2018a', 'netCDF/4.6.0-foss-2018a', 'nettle/3.4-GCCcore-6.4.0', 'nettle/3.4-foss-2018a', 'nettle/3.4-foss-2018b', 'numactl/2.0.10-GCC-4.8.4', 'numactl/2.0.11-GCC-4.9.3-2.25', 'numactl/2.0.11-GCC-5.4.0-2.26', 'numactl/2.0.11-GCC-6.3.0-2.27', 'numactl/2.0.11-GCCcore-6.4.0', 'numactl/2.0.11-GCCcore-7.3.0', 'opencv_contrib/3.4.1-foss-2018a-Python-3.6.4', 'pigz/2.4-foss-2018a', 'pixman/0.34.0-GCCcore-6.4.0', 'pkg-config/0.29.2-GCCcore-6.4.0', 'pkg-config/0.29.2-GCCcore-7.3.0', 'pkgconfig/1.3.1-foss-2018a-Python-3.6.4', 'qrupdate/1.1.2-foss-2018a', 'seqtk/1.3-foss-2018a', 'settarg/6.5.1', 'setuptools/39.1.0-GCCcore-6.4.0-Python-2.7.14-bare', 'texinfo/6.5-GCCcore-6.4.0', 'util-linux/2.31.1-GCCcore-6.4.0', 'vsc-base/2.8.0', 'vsc-base/2.8.1', 'vsc-install/0.11.1', 'vsc-install/0.11.2', 'vsc-mympirun/4.1.4', 'vsc-mympirun/4.1.5', 'wheel/0.30.0-foss-2018a-Python-3.6.4', 'wheel/0.31.0-foss-2018a-Python-3.6.4', 'wheel/0.31.0-fosscuda-2018a-Python-3.6.4', 'wheel/0.31.1-fosscuda-2018b-Python-2.7.15', 'x264/20180128-GCCcore-6.4.0', 'x265/2.6-GCCcore-6.4.0', 'xbitmaps/1.1.1', 'xprop/1.2.2-GCCcore-6.4.0-X11-20180131', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-6.3.0', 'zlib/1.2.11-GCCcore-6.4.0', 'zlib/1.2.11-GCCcore-7.3.0', 'zlib/1.2.11-GCCcore-8.1.0', 'zlib/1.2.8', 'zlib/1.2.8-GCCcore-4.9.3', 'zlib/1.2.8-GCCcore-5.4.0', 'zlib/1.2.8-foss-2016b']
== 2018-08-21 21:36:51,699 modules.py:648 DEBUG Current MODULEPATH: /home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
== 2018-08-21 21:36:51,700 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2018-08-21 21:36:51,700 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-08-21 21:36:51,701 modules.py:659 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show KMC/3.1.0-foss-2018a' from /home/centos/src/github/easybuild-easyconfigs/easybuild/easyconfigs
== 2018-08-21 21:36:51,838 modules.py:665 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show KMC/3.1.0-foss-2018a': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "dWlsZC8zLjYuMi5sdWEiLFsiZGVmYXVsdCJdPTEsWyJmdWxsTmFtZSJdPSJFYXN5QnVpbGQvMy42LjIiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09IkVhc3lCdWlsZCIsWyJzdGF0dXMiXT0iYWN0aXZlIix9LH0sbXBhdGhBPXsiL2hvbWUvY2VudG9zLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXgiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmUiLCIvdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1";
os.environ["_ModuleTable003_"] = "bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4Oi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZTovdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "3";
; stderr: Failed to find the following module(s): "KMC/3.1.0-foss-2018a" in your MODULEPATH
Try:
"module spider KMC/3.1.0-foss-2018a"
to see if the module(s) are available across all compilers and MPI implementations.
== 2018-08-21 21:36:51,840 modules.py:561 DEBUG Cached result for 'module show KMC/3.1.0-foss-2018a' with key '('MODULEPATH=/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'KMC/3.1.0-foss-2018a')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["MODULEPATH"] = "/home/centos/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "dWlsZC8zLjYuMi5sdWEiLFsiZGVmYXVsdCJdPTEsWyJmdWxsTmFtZSJdPSJFYXN5QnVpbGQvMy42LjIiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09IkVhc3lCdWlsZCIsWyJzdGF0dXMiXT0iYWN0aXZlIix9LH0sbXBhdGhBPXsiL2hvbWUvY2VudG9zLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXgiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmUiLCIvdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1";
os.environ["_ModuleTable003_"] = "bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4Oi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZTovdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "3";
Failed to find the following module(s): "KMC/3.1.0-foss-2018a" in your MODULEPATH
Try:
"module spider KMC/3.1.0-foss-2018a"
to see if the module(s) are available across all compilers and MPI implementations.
== 2018-08-21 21:36:51,848 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): Missing modules for one or more dependencies: KMC/3.1.0-foss-2018a (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/easybuild/tools/toolchain/toolchain.py:401 in add_dependencies)
== 2018-08-21 21:36:51,849 easyblock.py:2776 WARNING build failed (first 300 chars): Missing modules for one or more dependencies: KMC/3.1.0-foss-2018a
== 2018-08-21 21:36:51,850 easyblock.py:281 INFO Closing log for application name shovill version 0.9.0
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