Created
June 18, 2018 18:49
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(partial) EasyBuild log for failed build of /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/t/Tkinter/Tkinter-2.7.14-intel-2018a-Python-2.7.14.eb (PR #6467)
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== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: FFTW_STATIC_LIBS_MT (-fftw3xc_intel_pic -mkl_intel_lp64 -mkl_sequential -mkl_core) | |
== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: EBVARBLAS_LAPACK_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: EBDEVELICCIFORT (/mgmt/modules/eb/software/iccifort/2018.1.163-GCC-6.4.0-2.28/easybuild/iccifort-2018.1.163-GCC-6.4.0-2.28-easybuild-devel) | |
== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: CFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: EBVARBLACS_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: FCFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: EBVARI_MPI_F77 (ifort) | |
== 2018-06-18 19:49:39,584 environment.py:175 DEBUG Key in old environment found that is not in new one: EBVERSIONTCL (8.6.8) | |
== 2018-06-18 19:49:39,585 modules.py:413 DEBUG Current module paths: ['/well/rescomp/eb/modules/all', '/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles', '/gpfs0/mgmt/modules/Modules/modulefiles', '/mgmt/modules/eb/modules/all', '/users/rescomp/adamh/.local/easybuild/modules/all']; target module paths: ['/tmp/eb-69H7N1/tmpN368ts/all/', '/well/rescomp/eb/modules/all', '/mgmt/modules/eb/modules/all', '/users/rescomp/adamh/.local/easybuild/modules/all'] | |
== 2018-06-18 19:49:39,585 modules.py:421 DEBUG Not prepending 2 last entries of ['/tmp/eb-69H7N1/tmpN368ts/all/', '/well/rescomp/eb/modules/all', '/mgmt/modules/eb/modules/all', '/users/rescomp/adamh/.local/easybuild/modules/all'] | |
== 2018-06-18 19:49:39,585 filetools.py:1136 DEBUG Not creating existing path /tmp/eb-69H7N1/tmpN368ts/all/ | |
== 2018-06-18 19:49:39,585 modules.py:648 DEBUG Current MODULEPATH: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:39,586 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2018-06-18 19:49:39,586 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2018-06-18 19:49:39,586 modules.py:659 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python use /tmp/eb-69H7N1/tmpN368ts/all/' from /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2018-06-18 19:49:39,595 modules.py:665 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python use /tmp/eb-69H7N1/tmpN368ts/all/': stdout: os.environ['MODULEPATH'] = '/tmp/eb-69H7N1/tmpN368ts/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all' | |
; stderr: | |
== 2018-06-18 19:49:39,596 modules.py:605 DEBUG No checking of module output implemented for EnvironmentModulesC | |
== 2018-06-18 19:49:39,596 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
== 2018-06-18 19:49:39,596 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
== 2018-06-18 19:49:39,597 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2018-06-18 19:49:39,597 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
== 2018-06-18 19:49:39,597 modules.py:326 DEBUG $MODULEPATH after set_mod_paths: /tmp/eb-69H7N1/tmpN368ts/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:39,597 modules.py:426 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/eb-69H7N1/tmpN368ts/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:39,598 modules.py:648 DEBUG Current MODULEPATH: /tmp/eb-69H7N1/tmpN368ts/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:39,598 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2018-06-18 19:49:39,598 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2018-06-18 19:49:39,598 modules.py:659 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python --terse list' from /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2018-06-18 19:49:39,608 modules.py:665 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python --terse list': stdout: ; stderr: Currently Loaded Modulefiles: | |
EasyBuild/3.6.1 | |
== 2018-06-18 19:49:39,609 modules.py:605 DEBUG No checking of module output implemented for EnvironmentModulesC | |
== 2018-06-18 19:49:39,609 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
== 2018-06-18 19:49:39,609 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
== 2018-06-18 19:49:39,609 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2018-06-18 19:49:39,609 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
== 2018-06-18 19:49:39,610 modules.py:648 DEBUG Current MODULEPATH: /tmp/eb-69H7N1/tmpN368ts/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:39,610 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2018-06-18 19:49:39,610 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2018-06-18 19:49:39,610 modules.py:659 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python load Tkinter/2.7.14-intel-2018a-Python-2.7.14' from /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2018-06-18 19:49:40,168 modules.py:665 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python load Tkinter/2.7.14-intel-2018a-Python-2.7.14': stdout: os.environ['ACLOCAL_PATH'] = '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/share/aclocal:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/share/aclocal' | |
os.environ['CPATH'] = '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/include:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/include:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/include:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/include/freetype2:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/include:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/include:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/include:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/include:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib/libffi-3.2.1/include:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/include:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/include:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/include:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/include:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/include:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/include:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/include:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/include64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/include:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/include:/well/rescomp/eb/software/GCCcore/6.4.0/include' | |
os.environ['EBDEVELBINUTILS'] = '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/easybuild/binutils-2.28-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELBZIP2'] = '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/easybuild/bzip2-1.0.6-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELEXPAT'] = '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/easybuild/expat-2.2.5-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELFONTCONFIG'] = '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/easybuild/fontconfig-2.12.6-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELFREETYPE'] = '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/easybuild/freetype-2.9-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELGCCCORE'] = '/well/rescomp/eb/software/GCCcore/6.4.0/easybuild/GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELGMP'] = '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/easybuild/GMP-6.1.2-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELICC'] = '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/easybuild/icc-2018.1.163-GCC-6.4.0-2.28-easybuild-devel' | |
os.environ['EBDEVELICCIFORT'] = '/mgmt/modules/eb/software/iccifort/2018.1.163-GCC-6.4.0-2.28/easybuild/iccifort-2018.1.163-GCC-6.4.0-2.28-easybuild-devel' | |
os.environ['EBDEVELIFORT'] = '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/easybuild/ifort-2018.1.163-GCC-6.4.0-2.28-easybuild-devel' | |
os.environ['EBDEVELIIMPI'] = '/mgmt/modules/eb/software/iimpi/2018a/easybuild/iimpi-2018a-easybuild-devel' | |
os.environ['EBDEVELIMKL'] = '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/easybuild/imkl-2018.1.163-iimpi-2018a-easybuild-devel' | |
os.environ['EBDEVELIMPI'] = '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/easybuild/impi-2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28-easybuild-devel' | |
os.environ['EBDEVELINTEL'] = '/mgmt/modules/eb/software/intel/2018a/easybuild/intel-2018a-easybuild-devel' | |
os.environ['EBDEVELLIBFFI'] = '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/easybuild/libffi-3.2.1-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELLIBPNG'] = '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/easybuild/libpng-1.6.34-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELLIBREADLINE'] = '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/easybuild/libreadline-7.0-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELNCURSES'] = '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/easybuild/ncurses-6.0-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELPYTHON'] = '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/easybuild/Python-2.7.14-intel-2018a-easybuild-devel' | |
os.environ['EBDEVELSQLITE'] = '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/easybuild/SQLite-3.21.0-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELTCL'] = '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/easybuild/Tcl-8.6.8-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELTK'] = '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/easybuild/Tk-8.6.8-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELTKINTER'] = '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/easybuild/Tkinter-2.7.14-intel-2018a-Python-2.7.14-easybuild-devel' | |
os.environ['EBDEVELX11'] = '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/easybuild/X11-20180131-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBDEVELZLIB'] = '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/easybuild/zlib-1.2.11-GCCcore-6.4.0-easybuild-devel' | |
os.environ['EBEXTSLISTPYTHON'] = 'setuptools-38.4.0,pip-9.0.1,nose-1.3.7,numpy-1.14.0,scipy-1.0.0,blist-1.3.6,mpi4py-3.0.0,paycheck-1.0.2,pbr-3.1.1,Cython-0.27.3,six-1.11.0,python-dateutil-2.6.1,deap-1.2.2,decorator-4.1.2,liac-arff-2.1.1,pycrypto-2.6.1,ecdsa-0.13,enum34-1.1.6,cryptography-2.1.4,paramiko-2.4.0,pyparsing-2.2.0,netifaces-0.10.6,netaddr-0.7.19,funcsigs-1.0.2,mock-2.0.0,pytz-2017.3,pandas-0.22.0,bitstring-3.1.5,virtualenv-15.1.0,docopt-0.6.2,joblib-0.11,requests-2.18.4' | |
os.environ['EBROOTBINUTILS'] = '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0' | |
os.environ['EBROOTBZIP2'] = '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0' | |
os.environ['EBROOTEXPAT'] = '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0' | |
os.environ['EBROOTFONTCONFIG'] = '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0' | |
os.environ['EBROOTFREETYPE'] = '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0' | |
os.environ['EBROOTGCCCORE'] = '/well/rescomp/eb/software/GCCcore/6.4.0' | |
os.environ['EBROOTGMP'] = '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0' | |
os.environ['EBROOTICC'] = '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28' | |
os.environ['EBROOTICCIFORT'] = '/mgmt/modules/eb/software/iccifort/2018.1.163-GCC-6.4.0-2.28' | |
os.environ['EBROOTIFORT'] = '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28' | |
os.environ['EBROOTIIMPI'] = '/mgmt/modules/eb/software/iimpi/2018a' | |
os.environ['EBROOTIMKL'] = '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a' | |
os.environ['EBROOTIMPI'] = '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28' | |
os.environ['EBROOTINTEL'] = '/mgmt/modules/eb/software/intel/2018a' | |
os.environ['EBROOTLIBFFI'] = '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0' | |
os.environ['EBROOTLIBPNG'] = '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0' | |
os.environ['EBROOTLIBREADLINE'] = '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0' | |
os.environ['EBROOTNCURSES'] = '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0' | |
os.environ['EBROOTPYTHON'] = '/well/rescomp/eb/software/Python/2.7.14-intel-2018a' | |
os.environ['EBROOTSQLITE'] = '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0' | |
os.environ['EBROOTTCL'] = '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0' | |
os.environ['EBROOTTK'] = '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0' | |
os.environ['EBROOTTKINTER'] = '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14' | |
os.environ['EBROOTX11'] = '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0' | |
os.environ['EBROOTZLIB'] = '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0' | |
os.environ['EBVERSIONBINUTILS'] = '2.28' | |
os.environ['EBVERSIONBZIP2'] = '1.0.6' | |
os.environ['EBVERSIONEXPAT'] = '2.2.5' | |
os.environ['EBVERSIONFONTCONFIG'] = '2.12.6' | |
os.environ['EBVERSIONFREETYPE'] = '2.9' | |
os.environ['EBVERSIONGCCCORE'] = '6.4.0' | |
os.environ['EBVERSIONGMP'] = '6.1.2' | |
os.environ['EBVERSIONICC'] = '2018.1.163' | |
os.environ['EBVERSIONICCIFORT'] = '2018.1.163' | |
os.environ['EBVERSIONIFORT'] = '2018.1.163' | |
os.environ['EBVERSIONIIMPI'] = '2018a' | |
os.environ['EBVERSIONIMKL'] = '2018.1.163' | |
os.environ['EBVERSIONIMPI'] = '2018.1.163' | |
os.environ['EBVERSIONINTEL'] = '2018a' | |
os.environ['EBVERSIONLIBFFI'] = '3.2.1' | |
os.environ['EBVERSIONLIBPNG'] = '1.6.34' | |
os.environ['EBVERSIONLIBREADLINE'] = '7.0' | |
os.environ['EBVERSIONNCURSES'] = '6.0' | |
os.environ['EBVERSIONPYTHON'] = '2.7.14' | |
os.environ['EBVERSIONSQLITE'] = '3.21.0' | |
os.environ['EBVERSIONTCL'] = '8.6.8' | |
os.environ['EBVERSIONTK'] = '8.6.8' | |
os.environ['EBVERSIONTKINTER'] = '2.7.14' | |
os.environ['EBVERSIONX11'] = '20180131' | |
os.environ['EBVERSIONZLIB'] = '1.2.11' | |
os.environ['INTEL_PYTHONHOME'] = '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/python/intel64' | |
os.environ['I_MPI_ROOT'] = '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28' | |
os.environ['LD_LIBRARY_PATH'] = '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib' | |
os.environ['LIBRARY_PATH'] = '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib' | |
os.environ['LOADEDMODULES'] = 'EasyBuild/3.6.1:GCCcore/6.4.0:binutils/2.28-GCCcore-6.4.0:icc/2018.1.163-GCC-6.4.0-2.28:ifort/2018.1.163-GCC-6.4.0-2.28:iccifort/2018.1.163-GCC-6.4.0-2.28:impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28:iimpi/2018a:imkl/2018.1.163-iimpi-2018a:intel/2018a:bzip2/1.0.6-GCCcore-6.4.0:zlib/1.2.11-GCCcore-6.4.0:ncurses/6.0-GCCcore-6.4.0:libreadline/7.0-GCCcore-6.4.0:Tcl/8.6.8-GCCcore-6.4.0:SQLite/3.21.0-GCCcore-6.4.0:GMP/6.1.2-GCCcore-6.4.0:libffi/3.2.1-GCCcore-6.4.0:Python/2.7.14-intel-2018a:expat/2.2.5-GCCcore-6.4.0:libpng/1.6.34-GCCcore-6.4.0:freetype/2.9-GCCcore-6.4.0:fontconfig/2.12.6-GCCcore-6.4.0:X11/20180131-GCCcore-6.4.0:Tk/8.6.8-GCCcore-6.4.0:Tkinter/2.7.14-intel-2018a-Python-2.7.14' | |
os.environ['MANPATH'] = '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/man:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/share/man:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/man:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/man:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/man:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/man/common:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/man/common:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/share/man:/well/rescomp/eb/software/GCCcore/6.4.0/share/man:/mgmt/uge/8.5.0/man:/mgmt/uge/8.5.0/man:/usr/share/man/overrides:/usr/share/man/en:/usr/share/man:/usr/local/share/man' | |
os.environ['MKLROOT'] = '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl' | |
os.environ['MKL_EXAMPLES'] = '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/examples/' | |
os.environ['NLSPATH'] = '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/idb/intel64/locale/%l_%t/%N:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/idb/intel64/locale/%l_%t/%N:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/idb/intel64/locale/%l_%t/%N:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/idb/intel64/locale/%l_%t/%N' | |
os.environ['PATH'] = '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/bin:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/bin:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/bin:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/bin:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/bin:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/bin:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/bin:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/bin:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/bin:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/bin:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/bin:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/bin:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/bin:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/bin:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/bin64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/bin/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/bin/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/bin:/well/rescomp/eb/software/GCCcore/6.4.0/bin:/well/rescomp/eb/software/EasyBuild/3.6.1/bin:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/users/rescomp/adamh/anaconda2/bin:/mgmt/uge/8.5.0/bin/lx-amd64:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/usr/lpp/mmfs/bin:/users/rescomp/adamh/bin:/users/rescomp/adamh/EasyBuild/bin:/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd:/gpfs0/mgmt/modules/Modules/3.2.10/bin/' | |
os.environ['PKG_CONFIG_PATH'] = '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/share/pkgconfig:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/pkgconfig:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib/pkgconfig:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib/pkgconfig' | |
os.environ['PYTHONPATH'] = '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib/python2.7' | |
os.environ['TBBROOT'] = '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb' | |
os.environ['_LMFILES_'] = '/well/rescomp/eb/modules/all/EasyBuild/3.6.1:/well/rescomp/eb/modules/all/GCCcore/6.4.0:/well/rescomp/eb/modules/all/binutils/2.28-GCCcore-6.4.0:/mgmt/modules/eb/modules/all/icc/2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/ifort/2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/iccifort/2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/iimpi/2018a:/mgmt/modules/eb/modules/all/imkl/2018.1.163-iimpi-2018a:/mgmt/modules/eb/modules/all/intel/2018a:/well/rescomp/eb/modules/all/bzip2/1.0.6-GCCcore-6.4.0:/well/rescomp/eb/modules/all/zlib/1.2.11-GCCcore-6.4.0:/well/rescomp/eb/modules/all/ncurses/6.0-GCCcore-6.4.0:/well/rescomp/eb/modules/all/libreadline/7.0-GCCcore-6.4.0:/well/rescomp/eb/modules/all/Tcl/8.6.8-GCCcore-6.4.0:/well/rescomp/eb/modules/all/SQLite/3.21.0-GCCcore-6.4.0:/well/rescomp/eb/modules/all/GMP/6.1.2-GCCcore-6.4.0:/well/rescomp/eb/modules/all/libffi/3.2.1-GCCcore-6.4.0:/well/rescomp/eb/modules/all/Python/2.7.14-intel-2018a:/well/rescomp/eb/modules/all/expat/2.2.5-GCCcore-6.4.0:/well/rescomp/eb/modules/all/libpng/1.6.34-GCCcore-6.4.0:/well/rescomp/eb/modules/all/freetype/2.9-GCCcore-6.4.0:/well/rescomp/eb/modules/all/fontconfig/2.12.6-GCCcore-6.4.0:/well/rescomp/eb/modules/all/X11/20180131-GCCcore-6.4.0:/well/rescomp/eb/modules/all/Tk/8.6.8-GCCcore-6.4.0:/tmp/eb-69H7N1/tmpN368ts/all//Tkinter/2.7.14-intel-2018a-Python-2.7.14' | |
; stderr: | |
== 2018-06-18 19:49:40,169 modules.py:605 DEBUG No checking of module output implemented for EnvironmentModulesC | |
== 2018-06-18 19:49:40,171 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib', '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64', '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/well/rescomp/eb/software/GCCcore/6.4.0/lib64', '/well/rescomp/eb/software/GCCcore/6.4.0/lib'] to ['/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib', '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64', '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/well/rescomp/eb/software/GCCcore/6.4.0/lib64', '/well/rescomp/eb/software/GCCcore/6.4.0/lib'] | |
== 2018-06-18 19:49:40,171 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib (previous value: '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib') | |
== 2018-06-18 19:49:40,171 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2018-06-18 19:49:40,171 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
== 2018-06-18 19:49:40,172 run.py:173 DEBUG run_cmd: running cmd python -c 'import Tkinter' (in /gpfs2/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14) | |
== 2018-06-18 19:49:40,172 run.py:192 INFO running cmd: python -c 'import Tkinter' | |
== 2018-06-18 19:49:40,405 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2018-06-18 19:49:40,406 easyblock.py:2266 WARNING Sanity check: sanity check command python -c 'import Tkinter' exited with code 1 (output: Traceback (most recent call last): | |
File "<string>", line 1, in <module> | |
File "/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module> | |
import _tkinter # If this fails your Python may not be configured for Tk | |
ImportError: /well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib/python2.7/_tkinter.so: undefined symbol: PyUnicodeUCS4_DecodeUTF8 | |
) | |
== 2018-06-18 19:49:40,406 modules.py:648 DEBUG Current MODULEPATH: /tmp/eb-69H7N1/tmpN368ts/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:40,407 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib' to '' in environment for module command | |
== 2018-06-18 19:49:40,407 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2018-06-18 19:49:40,407 modules.py:659 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python unload Tkinter/2.7.14-intel-2018a-Python-2.7.14' from /gpfs2/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14 | |
== 2018-06-18 19:49:40,428 modules.py:665 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python unload Tkinter/2.7.14-intel-2018a-Python-2.7.14': stdout: os.environ['LIBRARY_PATH'] = '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib' | |
os.environ['LOADEDMODULES'] = 'EasyBuild/3.6.1:GCCcore/6.4.0:binutils/2.28-GCCcore-6.4.0:icc/2018.1.163-GCC-6.4.0-2.28:ifort/2018.1.163-GCC-6.4.0-2.28:iccifort/2018.1.163-GCC-6.4.0-2.28:impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28:iimpi/2018a:imkl/2018.1.163-iimpi-2018a:intel/2018a:bzip2/1.0.6-GCCcore-6.4.0:zlib/1.2.11-GCCcore-6.4.0:ncurses/6.0-GCCcore-6.4.0:libreadline/7.0-GCCcore-6.4.0:Tcl/8.6.8-GCCcore-6.4.0:SQLite/3.21.0-GCCcore-6.4.0:GMP/6.1.2-GCCcore-6.4.0:libffi/3.2.1-GCCcore-6.4.0:Python/2.7.14-intel-2018a:expat/2.2.5-GCCcore-6.4.0:libpng/1.6.34-GCCcore-6.4.0:freetype/2.9-GCCcore-6.4.0:fontconfig/2.12.6-GCCcore-6.4.0:X11/20180131-GCCcore-6.4.0:Tk/8.6.8-GCCcore-6.4.0' | |
os.environ['_LMFILES_'] = '/well/rescomp/eb/modules/all/EasyBuild/3.6.1:/well/rescomp/eb/modules/all/GCCcore/6.4.0:/well/rescomp/eb/modules/all/binutils/2.28-GCCcore-6.4.0:/mgmt/modules/eb/modules/all/icc/2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/ifort/2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/iccifort/2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28:/mgmt/modules/eb/modules/all/iimpi/2018a:/mgmt/modules/eb/modules/all/imkl/2018.1.163-iimpi-2018a:/mgmt/modules/eb/modules/all/intel/2018a:/well/rescomp/eb/modules/all/bzip2/1.0.6-GCCcore-6.4.0:/well/rescomp/eb/modules/all/zlib/1.2.11-GCCcore-6.4.0:/well/rescomp/eb/modules/all/ncurses/6.0-GCCcore-6.4.0:/well/rescomp/eb/modules/all/libreadline/7.0-GCCcore-6.4.0:/well/rescomp/eb/modules/all/Tcl/8.6.8-GCCcore-6.4.0:/well/rescomp/eb/modules/all/SQLite/3.21.0-GCCcore-6.4.0:/well/rescomp/eb/modules/all/GMP/6.1.2-GCCcore-6.4.0:/well/rescomp/eb/modules/all/libffi/3.2.1-GCCcore-6.4.0:/well/rescomp/eb/modules/all/Python/2.7.14-intel-2018a:/well/rescomp/eb/modules/all/expat/2.2.5-GCCcore-6.4.0:/well/rescomp/eb/modules/all/libpng/1.6.34-GCCcore-6.4.0:/well/rescomp/eb/modules/all/freetype/2.9-GCCcore-6.4.0:/well/rescomp/eb/modules/all/fontconfig/2.12.6-GCCcore-6.4.0:/well/rescomp/eb/modules/all/X11/20180131-GCCcore-6.4.0:/well/rescomp/eb/modules/all/Tk/8.6.8-GCCcore-6.4.0' | |
os.environ['EBDEVELTKINTER'] = '' | |
del os.environ['EBDEVELTKINTER'] | |
os.environ['EBROOTTKINTER'] = '' | |
del os.environ['EBROOTTKINTER'] | |
os.environ['EBVERSIONTKINTER'] = '' | |
del os.environ['EBVERSIONTKINTER'] | |
os.environ['PYTHONPATH'] = '' | |
del os.environ['PYTHONPATH'] | |
; stderr: | |
== 2018-06-18 19:49:40,428 modules.py:605 DEBUG No checking of module output implemented for EnvironmentModulesC | |
== 2018-06-18 19:49:40,430 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib', '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64', '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/well/rescomp/eb/software/GCCcore/6.4.0/lib64', '/well/rescomp/eb/software/GCCcore/6.4.0/lib'] to ['/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib', '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64', '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/well/rescomp/eb/software/GCCcore/6.4.0/lib64', '/well/rescomp/eb/software/GCCcore/6.4.0/lib'] | |
== 2018-06-18 19:49:40,430 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib (previous value: '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib') | |
== 2018-06-18 19:49:40,431 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2018-06-18 19:49:40,431 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
== 2018-06-18 19:49:40,432 modules.py:648 DEBUG Current MODULEPATH: /tmp/eb-69H7N1/tmpN368ts/all/:/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:40,432 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib' to '' in environment for module command | |
== 2018-06-18 19:49:40,433 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2018-06-18 19:49:40,433 modules.py:659 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python unuse /tmp/eb-69H7N1/tmpN368ts/all/' from /gpfs2/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14 | |
== 2018-06-18 19:49:40,447 modules.py:665 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python unuse /tmp/eb-69H7N1/tmpN368ts/all/': stdout: os.environ['MODULEPATH'] = '/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all' | |
; stderr: | |
== 2018-06-18 19:49:40,448 modules.py:605 DEBUG No checking of module output implemented for EnvironmentModulesC | |
== 2018-06-18 19:49:40,448 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib', '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64', '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/well/rescomp/eb/software/GCCcore/6.4.0/lib64', '/well/rescomp/eb/software/GCCcore/6.4.0/lib'] to ['/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib', '/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib', '/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64', '/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64', '/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64', '/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4', '/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64', '/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib', '/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/well/rescomp/eb/software/GCCcore/6.4.0/lib64', '/well/rescomp/eb/software/GCCcore/6.4.0/lib'] | |
== 2018-06-18 19:49:40,449 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib (previous value: '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib') | |
== 2018-06-18 19:49:40,449 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2018-06-18 19:49:40,450 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
== 2018-06-18 19:49:40,450 modules.py:326 DEBUG $MODULEPATH after set_mod_paths: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all | |
== 2018-06-18 19:49:40,451 filetools.py:1204 INFO Path /tmp/eb-69H7N1/tmpN368ts successfully removed. | |
== 2018-06-18 19:49:40,452 environment.py:170 DEBUG Key in new environment found that is not in old one: CPPFLAGS (-I/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include -I/well/rescomp/eb/software/Python/2.7.14-intel-2018a/include -I/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/include) | |
== 2018-06-18 19:49:40,452 environment.py:97 INFO Environment variable CPPFLAGS set to -I/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include -I/well/rescomp/eb/software/Python/2.7.14-intel-2018a/include -I/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/include (previously undefined) | |
== 2018-06-18 19:49:40,452 environment.py:170 DEBUG Key in new environment found that is not in old one: I_MPI_CC (icc) | |
== 2018-06-18 19:49:40,453 environment.py:97 INFO Environment variable I_MPI_CC set to icc (previously undefined) | |
== 2018-06-18 19:49:40,453 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCC (icc) | |
== 2018-06-18 19:49:40,453 environment.py:97 INFO Environment variable EBVARCC set to icc (previously undefined) | |
== 2018-06-18 19:49:40,454 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPICC (mpiicc) | |
== 2018-06-18 19:49:40,454 environment.py:97 INFO Environment variable EBVARMPICC set to mpiicc (previously undefined) | |
== 2018-06-18 19:49:40,454 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARSCALAPACK_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,454 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,455 environment.py:170 DEBUG Key in new environment found that is not in old one: MPICC (mpiicc) | |
== 2018-06-18 19:49:40,455 environment.py:97 INFO Environment variable MPICC set to mpiicc (previously undefined) | |
== 2018-06-18 19:49:40,455 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBLAPACK_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,455 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,456 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,456 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,456 environment.py:170 DEBUG Key in new environment found that is not in old one: MPI_LIB_STATIC (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.a) | |
== 2018-06-18 19:49:40,457 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.a (previously undefined) | |
== 2018-06-18 19:49:40,457 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_LAPACK_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,457 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,457 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBLAPACK (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,458 environment.py:97 INFO Environment variable LIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,458 environment.py:170 DEBUG Key in new environment found that is not in old one: SCALAPACK_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,458 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,458 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFTW_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,459 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,459 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFT_STATIC_LIBS (libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,459 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,459 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCXXFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,460 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,460 environment.py:170 DEBUG Key in new environment found that is not in old one: FFTW_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw) | |
== 2018-06-18 19:49:40,460 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw (previously undefined) | |
== 2018-06-18 19:49:40,461 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARF90 (ifort) | |
== 2018-06-18 19:49:40,461 environment.py:97 INFO Environment variable EBVARF90 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,461 environment.py:170 DEBUG Key in new environment found that is not in old one: SCALAPACK_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,461 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,462 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPI_LIB_SHARED (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.so) | |
== 2018-06-18 19:49:40,462 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.so (previously undefined) | |
== 2018-06-18 19:49:40,462 environment.py:170 DEBUG Key in new environment found that is not in old one: MPICH_F77 (ifort) | |
== 2018-06-18 19:49:40,463 environment.py:97 INFO Environment variable MPICH_F77 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,463 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBSCALAPACK (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,463 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,463 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBBLACS_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,464 environment.py:97 INFO Environment variable EBVARLIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,464 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPIF77 (mpiifort) | |
== 2018-06-18 19:49:40,464 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpiifort (previously undefined) | |
== 2018-06-18 19:49:40,464 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARSCALAPACK_STATIC_LIBS (libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,465 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,465 environment.py:170 DEBUG Key in new environment found that is not in old one: LAPACK_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,465 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,465 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPICXX (mpiicpc) | |
== 2018-06-18 19:49:40,465 environment.py:97 INFO Environment variable EBVARMPICXX set to mpiicpc (previously undefined) | |
== 2018-06-18 19:49:40,465 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBLAPACK_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,465 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,465 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFCFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,466 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,466 environment.py:170 DEBUG Key in new environment found that is not in old one: CXX (icpc) | |
== 2018-06-18 19:49:40,466 environment.py:97 INFO Environment variable CXX set to icpc (previously undefined) | |
== 2018-06-18 19:49:40,466 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLACS_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,466 environment.py:97 INFO Environment variable EBVARBLACS_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,466 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFT_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,466 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,466 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBLAPACK_MT_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,467 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,467 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVAROPTFLAGS (-O2 -xHost) | |
== 2018-06-18 19:49:40,467 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -xHost (previously undefined) | |
== 2018-06-18 19:49:40,467 environment.py:170 DEBUG Key in new environment found that is not in old one: FC (ifort) | |
== 2018-06-18 19:49:40,467 environment.py:97 INFO Environment variable FC set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,467 environment.py:170 DEBUG Key in new environment found that is not in old one: SCALAPACK_STATIC_LIBS (libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,467 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,467 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,468 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,468 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPI_LIB_STATIC (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.a) | |
== 2018-06-18 19:49:40,468 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.a (previously undefined) | |
== 2018-06-18 19:49:40,468 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,468 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,468 environment.py:170 DEBUG Key in new environment found that is not in old one: I_MPI_F77 (ifort) | |
== 2018-06-18 19:49:40,468 environment.py:97 INFO Environment variable I_MPI_F77 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,468 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARF90FLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,469 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,469 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARPRECFLAGS (-ftz -fp-speculation=safe -fp-model source) | |
== 2018-06-18 19:49:40,469 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined) | |
== 2018-06-18 19:49:40,469 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARF77 (ifort) | |
== 2018-06-18 19:49:40,469 environment.py:97 INFO Environment variable EBVARF77 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,469 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBBLACS_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,469 environment.py:97 INFO Environment variable LIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,469 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPICH_CXX (icpc) | |
== 2018-06-18 19:49:40,470 environment.py:97 INFO Environment variable EBVARMPICH_CXX set to icpc (previously undefined) | |
== 2018-06-18 19:49:40,470 environment.py:170 DEBUG Key in new environment found that is not in old one: FFTW_STATIC_LIBS (libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,470 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,470 environment.py:170 DEBUG Key in new environment found that is not in old one: MPI_LIB_SHARED (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.so) | |
== 2018-06-18 19:49:40,470 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64/libmpi.so (previously undefined) | |
== 2018-06-18 19:49:40,470 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPI_LIB_DIR (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64) | |
== 2018-06-18 19:49:40,470 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64 (previously undefined) | |
== 2018-06-18 19:49:40,470 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBSCALAPACK_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,471 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,471 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLAPACK_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,471 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,471 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFC (ifort) | |
== 2018-06-18 19:49:40,471 environment.py:97 INFO Environment variable EBVARFC set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,471 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARI_MPI_FC (ifort) | |
== 2018-06-18 19:49:40,471 environment.py:97 INFO Environment variable EBVARI_MPI_FC set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,471 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,472 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,472 environment.py:170 DEBUG Key in new environment found that is not in old one: FFT_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,472 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,472 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBLAPACK (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,472 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,472 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBFFT (-Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,472 environment.py:97 INFO Environment variable LIBFFT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,472 environment.py:170 DEBUG Key in new environment found that is not in old one: FFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,473 environment.py:97 INFO Environment variable FFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,473 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLACS_STATIC_LIBS (libmkl_blacs_intelmpi_lp64.a) | |
== 2018-06-18 19:49:40,473 environment.py:97 INFO Environment variable EBVARBLACS_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
== 2018-06-18 19:49:40,473 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPICH_F77 (ifort) | |
== 2018-06-18 19:49:40,473 environment.py:97 INFO Environment variable EBVARMPICH_F77 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,473 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_MT_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,473 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,473 environment.py:170 DEBUG Key in new environment found that is not in old one: BLACS_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,474 environment.py:97 INFO Environment variable BLACS_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,474 environment.py:170 DEBUG Key in new environment found that is not in old one: BLACS_STATIC_LIBS (libmkl_blacs_intelmpi_lp64.a) | |
== 2018-06-18 19:49:40,474 environment.py:97 INFO Environment variable BLACS_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
== 2018-06-18 19:49:40,474 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBSCALAPACK_MT_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,474 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,474 environment.py:170 DEBUG Key in new environment found that is not in old one: I_MPI_CXX (icpc) | |
== 2018-06-18 19:49:40,474 environment.py:97 INFO Environment variable I_MPI_CXX set to icpc (previously undefined) | |
== 2018-06-18 19:49:40,474 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBBLACS (-Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,475 environment.py:97 INFO Environment variable LIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,475 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,475 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,475 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPIF90 (mpiifort) | |
== 2018-06-18 19:49:40,475 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpiifort (previously undefined) | |
== 2018-06-18 19:49:40,475 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFT_STATIC_LIBS_MT (libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,475 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,475 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLAPACK_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,476 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,476 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBLAPACK_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,476 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,476 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBSCALAPACK (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,476 environment.py:97 INFO Environment variable LIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,476 environment.py:170 DEBUG Key in new environment found that is not in old one: MPI_LIB_DIR (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64) | |
== 2018-06-18 19:49:40,476 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64 (previously undefined) | |
== 2018-06-18 19:49:40,476 environment.py:170 DEBUG Key in new environment found that is not in old one: FCFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,477 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,477 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBSCALAPACK_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,477 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,477 environment.py:170 DEBUG Key in new environment found that is not in old one: CXXFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,477 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,477 environment.py:170 DEBUG Key in new environment found that is not in old one: I_MPI_F90 (ifort) | |
== 2018-06-18 19:49:40,477 environment.py:97 INFO Environment variable I_MPI_F90 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,477 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBBLACS (-Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,478 environment.py:97 INFO Environment variable EBVARLIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,478 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBS (-liomp5 -lpthread) | |
== 2018-06-18 19:49:40,478 environment.py:97 INFO Environment variable LIBS set to -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,478 environment.py:167 DEBUG Key in new environment found that is different from old one: LD_LIBRARY_PATH (/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib) | |
== 2018-06-18 19:49:40,478 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib (previous value: '/well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib:/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/X11/20180131-GCCcore-6.4.0/lib:/well/rescomp/eb/software/fontconfig/2.12.6-GCCcore-6.4.0/lib:/well/rescomp/eb/software/freetype/2.9-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libpng/1.6.34-GCCcore-6.4.0/lib:/well/rescomp/eb/software/expat/2.2.5-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/site-packages/numpy-1.14.0-py2.7-linux-x86_64.egg/numpy/core/lib:/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib64:/well/rescomp/eb/software/libffi/3.2.1-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GMP/6.1.2-GCCcore-6.4.0/lib:/well/rescomp/eb/software/SQLite/3.21.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/Tcl/8.6.8-GCCcore-6.4.0/lib:/well/rescomp/eb/software/libreadline/7.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/ncurses/6.0-GCCcore-6.4.0/lib:/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib:/well/rescomp/eb/software/bzip2/1.0.6-GCCcore-6.4.0/lib:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64:/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib/intel64:/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/lib64:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/ifort/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/debugger_2018/libipt/intel64/lib:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/tbb/lib/intel64/gcc4.4:/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64:/well/rescomp/eb/software/binutils/2.28-GCCcore-6.4.0/lib:/well/rescomp/eb/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/well/rescomp/eb/software/GCCcore/6.4.0/lib64:/well/rescomp/eb/software/GCCcore/6.4.0/lib') | |
== 2018-06-18 19:49:40,478 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,478 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,479 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLACS_MT_STATIC_LIBS (libmkl_blacs_intelmpi_lp64.a) | |
== 2018-06-18 19:49:40,479 environment.py:97 INFO Environment variable EBVARBLACS_MT_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
== 2018-06-18 19:49:40,479 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFTW_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw) | |
== 2018-06-18 19:49:40,479 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw (previously undefined) | |
== 2018-06-18 19:49:40,479 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARI_MPI_CXX (icpc) | |
== 2018-06-18 19:49:40,479 environment.py:97 INFO Environment variable EBVARI_MPI_CXX set to icpc (previously undefined) | |
== 2018-06-18 19:49:40,479 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCXX (icpc) | |
== 2018-06-18 19:49:40,479 environment.py:97 INFO Environment variable EBVARCXX set to icpc (previously undefined) | |
== 2018-06-18 19:49:40,480 environment.py:170 DEBUG Key in new environment found that is not in old one: FFT_STATIC_LIBS (libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,480 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,480 environment.py:170 DEBUG Key in new environment found that is not in old one: F90 (ifort) | |
== 2018-06-18 19:49:40,480 environment.py:97 INFO Environment variable F90 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,480 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBBLAS (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,480 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,480 environment.py:170 DEBUG Key in new environment found that is not in old one: MPICH_CC (icc) | |
== 2018-06-18 19:49:40,480 environment.py:97 INFO Environment variable MPICH_CC set to icc (previously undefined) | |
== 2018-06-18 19:49:40,481 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFTW_STATIC_LIBS_MT (-fftw3xc_intel_pic -mkl_intel_lp64 -mkl_sequential -mkl_core) | |
== 2018-06-18 19:49:40,481 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3xc_intel_pic -mkl_intel_lp64 -mkl_sequential -mkl_core (previously undefined) | |
== 2018-06-18 19:49:40,481 environment.py:170 DEBUG Key in new environment found that is not in old one: F90FLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,481 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,481 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCPPFLAGS (-I/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include -I/well/rescomp/eb/software/Python/2.7.14-intel-2018a/include -I/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/include) | |
== 2018-06-18 19:49:40,481 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include -I/well/rescomp/eb/software/Python/2.7.14-intel-2018a/include -I/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/include -I/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/include (previously undefined) | |
== 2018-06-18 19:49:40,481 environment.py:170 DEBUG Key in new environment found that is not in old one: MPICXX (mpiicpc) | |
== 2018-06-18 19:49:40,481 environment.py:97 INFO Environment variable MPICXX set to mpiicpc (previously undefined) | |
== 2018-06-18 19:49:40,482 environment.py:170 DEBUG Key in new environment found that is not in old one: LAPACK_MT_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,482 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,482 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPI_INC_DIR (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/include64) | |
== 2018-06-18 19:49:40,482 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/include64 (previously undefined) | |
== 2018-06-18 19:49:40,482 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,482 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,483 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_LAPACK_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,483 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,483 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_LAPACK_MT_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,483 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,483 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_LAPACK_MT_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,483 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,483 environment.py:170 DEBUG Key in new environment found that is not in old one: CC (icc) | |
== 2018-06-18 19:49:40,484 environment.py:97 INFO Environment variable CC set to icc (previously undefined) | |
== 2018-06-18 19:49:40,484 environment.py:170 DEBUG Key in new environment found that is not in old one: MPICH_CXX (icpc) | |
== 2018-06-18 19:49:40,484 environment.py:97 INFO Environment variable MPICH_CXX set to icpc (previously undefined) | |
== 2018-06-18 19:49:40,484 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_LAPACK_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,484 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,484 environment.py:170 DEBUG Key in new environment found that is not in old one: MPICH_F90 (ifort) | |
== 2018-06-18 19:49:40,484 environment.py:97 INFO Environment variable MPICH_F90 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,485 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFTW_STATIC_LIBS (libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,485 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,485 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBLAPACK_MT_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,485 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,485 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBBLAS (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,485 environment.py:97 INFO Environment variable LIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,486 environment.py:170 DEBUG Key in new environment found that is not in old one: PRECFLAGS (-ftz -fp-speculation=safe -fp-model source) | |
== 2018-06-18 19:49:40,486 environment.py:97 INFO Environment variable PRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined) | |
== 2018-06-18 19:49:40,486 environment.py:170 DEBUG Key in new environment found that is not in old one: F77 (ifort) | |
== 2018-06-18 19:49:40,486 environment.py:97 INFO Environment variable F77 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,486 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARSCALAPACK_MT_STATIC_LIBS (libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,486 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,487 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBSCALAPACK_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,487 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,487 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBBLAS_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,487 environment.py:97 INFO Environment variable LIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,487 environment.py:170 DEBUG Key in new environment found that is not in old one: MPICH_FC (ifort) | |
== 2018-06-18 19:49:40,487 environment.py:97 INFO Environment variable MPICH_FC set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,487 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPIFC (mpiifort) | |
== 2018-06-18 19:49:40,487 environment.py:97 INFO Environment variable EBVARMPIFC set to mpiifort (previously undefined) | |
== 2018-06-18 19:49:40,488 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBFFT_MT (-Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,488 environment.py:97 INFO Environment variable LIBFFT_MT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,488 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBS (-liomp5 -lpthread) | |
== 2018-06-18 19:49:40,488 environment.py:97 INFO Environment variable EBVARLIBS set to -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,488 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBLAPACK_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,488 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,488 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARI_MPI_F90 (ifort) | |
== 2018-06-18 19:49:40,489 environment.py:97 INFO Environment variable EBVARI_MPI_F90 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,489 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARSCALAPACK_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,489 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,489 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBFFT_MT (-Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,489 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,489 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_LAPACK_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,489 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,489 environment.py:170 DEBUG Key in new environment found that is not in old one: MPI_INC_DIR (/mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/include64) | |
== 2018-06-18 19:49:40,490 environment.py:97 INFO Environment variable MPI_INC_DIR set to /mgmt/modules/eb/software/impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28/include64 (previously undefined) | |
== 2018-06-18 19:49:40,490 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPICH_F90 (ifort) | |
== 2018-06-18 19:49:40,490 environment.py:97 INFO Environment variable EBVARMPICH_F90 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,490 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPICH_FC (ifort) | |
== 2018-06-18 19:49:40,490 environment.py:97 INFO Environment variable EBVARMPICH_FC set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,490 environment.py:170 DEBUG Key in new environment found that is not in old one: LAPACK_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,490 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,490 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLAPACK_MT_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,490 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,491 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBSCALAPACK_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,491 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,491 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBBLAS_MT (-Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,491 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,491 environment.py:170 DEBUG Key in new environment found that is not in old one: FFT_STATIC_LIBS_MT (libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,491 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3xc_intel_pic.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,491 environment.py:170 DEBUG Key in new environment found that is not in old one: LIBSCALAPACK_MT_ONLY (-Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread) | |
== 2018-06-18 19:49:40,492 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
== 2018-06-18 19:49:40,492 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARMPICH_CC (icc) | |
== 2018-06-18 19:49:40,492 environment.py:97 INFO Environment variable EBVARMPICH_CC set to icc (previously undefined) | |
== 2018-06-18 19:49:40,492 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLDFLAGS (-L/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib -L/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib) | |
== 2018-06-18 19:49:40,492 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib -L/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib (previously undefined) | |
== 2018-06-18 19:49:40,492 environment.py:170 DEBUG Key in new environment found that is not in old one: LDFLAGS (-L/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib -L/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib) | |
== 2018-06-18 19:49:40,492 environment.py:97 INFO Environment variable LDFLAGS set to -L/mgmt/modules/eb/software/icc/2018.1.163-GCC-6.4.0-2.28/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 -L/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/lib -L/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib -L/well/rescomp/eb/software/Tk/8.6.8-GCCcore-6.4.0/lib -L/well/rescomp/eb/software/zlib/1.2.11-GCCcore-6.4.0/lib (previously undefined) | |
== 2018-06-18 19:49:40,492 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLAPACK_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,493 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,493 environment.py:170 DEBUG Key in new environment found that is not in old one: BLAS_LAPACK_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include) | |
== 2018-06-18 19:49:40,493 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include (previously undefined) | |
== 2018-06-18 19:49:40,493 environment.py:170 DEBUG Key in new environment found that is not in old one: BLACS_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,493 environment.py:97 INFO Environment variable BLACS_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,493 environment.py:170 DEBUG Key in new environment found that is not in old one: MPIF90 (mpiifort) | |
== 2018-06-18 19:49:40,493 environment.py:97 INFO Environment variable MPIF90 set to mpiifort (previously undefined) | |
== 2018-06-18 19:49:40,493 environment.py:170 DEBUG Key in new environment found that is not in old one: BLACS_MT_STATIC_LIBS (libmkl_blacs_intelmpi_lp64.a) | |
== 2018-06-18 19:49:40,494 environment.py:97 INFO Environment variable BLACS_MT_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
== 2018-06-18 19:49:40,494 environment.py:170 DEBUG Key in new environment found that is not in old one: LAPACK_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,494 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,494 environment.py:170 DEBUG Key in new environment found that is not in old one: I_MPI_FC (ifort) | |
== 2018-06-18 19:49:40,494 environment.py:97 INFO Environment variable I_MPI_FC set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,494 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLACS_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,494 environment.py:97 INFO Environment variable EBVARBLACS_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,494 environment.py:170 DEBUG Key in new environment found that is not in old one: FFTW_LIB_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64) | |
== 2018-06-18 19:49:40,495 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/lib/intel64 (previously undefined) | |
== 2018-06-18 19:49:40,495 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_MT_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,495 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,495 environment.py:170 DEBUG Key in new environment found that is not in old one: OPTFLAGS (-O2 -xHost) | |
== 2018-06-18 19:49:40,495 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -xHost (previously undefined) | |
== 2018-06-18 19:49:40,495 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARLIBFFT (-Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic) | |
== 2018-06-18 19:49:40,495 environment.py:97 INFO Environment variable EBVARLIBFFT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel_pic -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
== 2018-06-18 19:49:40,495 environment.py:170 DEBUG Key in new environment found that is not in old one: FFT_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw) | |
== 2018-06-18 19:49:40,496 environment.py:97 INFO Environment variable FFT_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw (previously undefined) | |
== 2018-06-18 19:49:40,496 environment.py:170 DEBUG Key in new environment found that is not in old one: MPIF77 (mpiifort) | |
== 2018-06-18 19:49:40,496 environment.py:97 INFO Environment variable MPIF77 set to mpiifort (previously undefined) | |
== 2018-06-18 19:49:40,496 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARI_MPI_CC (icc) | |
== 2018-06-18 19:49:40,496 environment.py:97 INFO Environment variable EBVARI_MPI_CC set to icc (previously undefined) | |
== 2018-06-18 19:49:40,496 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARCFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,496 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,496 environment.py:170 DEBUG Key in new environment found that is not in old one: FFTW_STATIC_LIBS_MT (-fftw3xc_intel_pic -mkl_intel_lp64 -mkl_sequential -mkl_core) | |
== 2018-06-18 19:49:40,497 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3xc_intel_pic -mkl_intel_lp64 -mkl_sequential -mkl_core (previously undefined) | |
== 2018-06-18 19:49:40,497 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARBLAS_LAPACK_STATIC_LIBS (libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a) | |
== 2018-06-18 19:49:40,497 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
== 2018-06-18 19:49:40,497 environment.py:170 DEBUG Key in new environment found that is not in old one: CFLAGS (-O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC) | |
== 2018-06-18 19:49:40,497 environment.py:97 INFO Environment variable CFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fPIC (previously undefined) | |
== 2018-06-18 19:49:40,497 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARFFT_INC_DIR (/mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw) | |
== 2018-06-18 19:49:40,497 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /mgmt/modules/eb/software/imkl/2018.1.163-iimpi-2018a/mkl/include/fftw (previously undefined) | |
== 2018-06-18 19:49:40,498 environment.py:170 DEBUG Key in new environment found that is not in old one: SCALAPACK_MT_STATIC_LIBS (libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a) | |
== 2018-06-18 19:49:40,498 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
== 2018-06-18 19:49:40,498 environment.py:170 DEBUG Key in new environment found that is not in old one: EBVARI_MPI_F77 (ifort) | |
== 2018-06-18 19:49:40,498 environment.py:97 INFO Environment variable EBVARI_MPI_F77 set to ifort (previously undefined) | |
== 2018-06-18 19:49:40,498 environment.py:170 DEBUG Key in new environment found that is not in old one: MPIFC (mpiifort) | |
== 2018-06-18 19:49:40,498 environment.py:97 INFO Environment variable MPIFC set to mpiifort (previously undefined) | |
== 2018-06-18 19:49:40,499 easyblock.py:2286 DEBUG Skiping RPATH sanity check | |
== 2018-06-18 19:49:41,293 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Sanity check failed: sanity check command python -c 'import Tkinter' exited with code 1 (output: Traceback (most recent call last): | |
File "<string>", line 1, in <module> | |
File "/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module> | |
import _tkinter # If this fails your Python may not be configured for Tk | |
ImportError: /well/rescomp/eb/software/Tkinter/2.7.14-intel-2018a-Python-2.7.14/lib/python2.7/_tkinter.so: undefined symbol: PyUnicodeUCS4_DecodeUTF8 | |
) (at easybuild/framework/easyblock.py:2290 in _sanity_check_step) | |
== 2018-06-18 19:49:41,293 easyblock.py:2778 WARNING build failed (first 300 chars): Sanity check failed: sanity check command python -c 'import Tkinter' exited with code 1 (output: Traceback (most recent call last): | |
File "<string>", line 1, in <module> | |
File "/well/rescomp/eb/software/Python/2.7.14-intel-2018a/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module> | |
import _tk | |
== 2018-06-18 19:49:41,293 easyblock.py:281 INFO Closing log for application name Tkinter version 2.7.14 |
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