Created
June 26, 2024 11:40
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(partial) EasyBuild log for failed build of /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb (PR(s) #20898)
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== 2024-06-26 11:40:46,932 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:46,941 filetools.py:1307 DEBUG Computed sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/spdep_1.3-5.tar.gz: ba8efa06ddbc12408f4f6d4c85606d84922131d9c05953e0b23b81f03e56e626 (correct checksum: ba8efa06ddbc12408f4f6d4c85606d84922131d9c05953e0b23b81f03e56e626) | |
== 2024-06-26 11:40:46,941 easyblock.py:685 INFO Checksum for extension source spdep_1.3-5.tar.gz verified | |
== 2024-06-26 11:40:46,941 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-06-26 11:40:46,941 easyblock.py:726 DEBUG No patches found for extension spdep. | |
== 2024-06-26 11:40:46,941 templates.py:201 DEBUG config: {'name': 'stringmagic', 'version': '1.1.2', 'options': {'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s', 'https://cran.r-project.org/src/contrib/', 'https://cran.freestatistics.org/src/contrib'], 'source_tmpl': '%(name)s_%(version)s.tar.gz', 'checksums': ['eed1c04aa99be5a99ecfdd32498279f170e261669cc1b91d18673454064b8f8c']}, 'easyblock': None} | |
== 2024-06-26 11:40:46,941 templates.py:231 DEBUG version found in easyconfig is 1.1.2 | |
== 2024-06-26 11:40:46,941 templates.py:333 DEBUG name: name, config: stringmagic | |
== 2024-06-26 11:40:46,941 templates.py:333 DEBUG name: version, config: 1.1.2 | |
== 2024-06-26 11:40:46,941 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for stringmagic_1.1.2.tar.gz: /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN | |
== 2024-06-26 11:40:46,941 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /eb/maint/software/EasyBuild/4.9.2/bin/eb | |
== 2024-06-26 11:40:46,942 tools.py:288 INFO Also considering installation prefix /eb/maint/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/easybuild/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/files_pr20898/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/fake_vsc__p48v_u7/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:307 DEBUG Added easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-06-26 11:40:46,943 tools.py:307 DEBUG Added /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:46,944 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN | |
== 2024-06-26 11:40:46,944 easyblock.py:938 DEBUG Trying to download file stringmagic_1.1.2.tar.gz from https://cran.r-project.org/src/contrib/Archive/stringmagic/stringmagic_1.1.2.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz ... | |
== 2024-06-26 11:40:46,944 filetools.py:752 DEBUG Trying to download stringmagic_1.1.2.tar.gz from https://cran.r-project.org/src/contrib/Archive/stringmagic/stringmagic_1.1.2.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz | |
== 2024-06-26 11:40:46,944 filetools.py:755 DEBUG Using timeout of 10 seconds for initiating download | |
== 2024-06-26 11:40:46,944 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:47,064 filetools.py:832 WARNING URL https://cran.r-project.org/src/contrib/Archive/stringmagic/stringmagic_1.1.2.tar.gz was not found (HTTP response code 404), not trying again | |
== 2024-06-26 11:40:47,066 filetools.py:859 WARNING Download of https://cran.r-project.org/src/contrib/Archive/stringmagic/stringmagic_1.1.2.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz failed, done trying | |
== 2024-06-26 11:40:47,077 easyblock.py:938 DEBUG Trying to download file stringmagic_1.1.2.tar.gz from https://cran.r-project.org/src/contrib/stringmagic_1.1.2.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz ... | |
== 2024-06-26 11:40:47,077 filetools.py:752 DEBUG Trying to download stringmagic_1.1.2.tar.gz from https://cran.r-project.org/src/contrib/stringmagic_1.1.2.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz | |
== 2024-06-26 11:40:47,077 filetools.py:755 DEBUG Using timeout of 10 seconds for initiating download | |
== 2024-06-26 11:40:47,077 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:47,199 filetools.py:815 DEBUG HTTP response code for given url https://cran.r-project.org/src/contrib/stringmagic_1.1.2.tar.gz: 200 | |
== 2024-06-26 11:40:47,200 filetools.py:816 INFO File size for https://cran.r-project.org/src/contrib/stringmagic_1.1.2.tar.gz: 3340420 | |
== 2024-06-26 11:40:47,200 filetools.py:270 INFO Not showing progress bar for downloading small file (size 3340420) | |
== 2024-06-26 11:40:47,200 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:47,428 filetools.py:823 INFO Downloaded file stringmagic_1.1.2.tar.gz from url https://cran.r-project.org/src/contrib/stringmagic_1.1.2.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz | |
== 2024-06-26 11:40:47,428 filetools.py:855 INFO Successful download of file stringmagic_1.1.2.tar.gz from url https://cran.r-project.org/src/contrib/stringmagic_1.1.2.tar.gz to path /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz | |
== 2024-06-26 11:40:47,433 easyblock.py:951 INFO Successfully downloaded source file stringmagic_1.1.2.tar.gz from https://cran.r-project.org/src/contrib/stringmagic_1.1.2.tar.gz | |
== 2024-06-26 11:40:47,433 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,439 easyblock.py:679 INFO md5 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz: 0a2fcb182a7006b2cde153f1d1efccec | |
== 2024-06-26 11:40:47,439 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,447 easyblock.py:679 INFO sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz: eed1c04aa99be5a99ecfdd32498279f170e261669cc1b91d18673454064b8f8c | |
== 2024-06-26 11:40:47,447 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-06-26 11:40:47,447 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,455 filetools.py:1307 DEBUG Computed sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/stringmagic_1.1.2.tar.gz: eed1c04aa99be5a99ecfdd32498279f170e261669cc1b91d18673454064b8f8c (correct checksum: eed1c04aa99be5a99ecfdd32498279f170e261669cc1b91d18673454064b8f8c) | |
== 2024-06-26 11:40:47,455 easyblock.py:685 INFO Checksum for extension source stringmagic_1.1.2.tar.gz verified | |
== 2024-06-26 11:40:47,455 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-06-26 11:40:47,455 easyblock.py:726 DEBUG No patches found for extension stringmagic. | |
== 2024-06-26 11:40:47,455 templates.py:201 DEBUG config: {'name': 'dreamerr', 'version': '1.4.0', 'options': {'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s', 'https://cran.r-project.org/src/contrib/', 'https://cran.freestatistics.org/src/contrib'], 'source_tmpl': '%(name)s_%(version)s.tar.gz', 'checksums': ['3e5e4afd10623b6dac6bb9b8bf0480d41c7422884cfec2d9d9786414f9026a87']}, 'easyblock': None} | |
== 2024-06-26 11:40:47,455 templates.py:231 DEBUG version found in easyconfig is 1.4.0 | |
== 2024-06-26 11:40:47,455 templates.py:333 DEBUG name: name, config: dreamerr | |
== 2024-06-26 11:40:47,456 templates.py:333 DEBUG name: version, config: 1.4.0 | |
== 2024-06-26 11:40:47,456 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for dreamerr_1.4.0.tar.gz: /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN | |
== 2024-06-26 11:40:47,456 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /eb/maint/software/EasyBuild/4.9.2/bin/eb | |
== 2024-06-26 11:40:47,456 tools.py:288 INFO Also considering installation prefix /eb/maint/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/easybuild/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/files_pr20898/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/fake_vsc__p48v_u7/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,456 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:307 DEBUG Added easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,457 tools.py:307 DEBUG Added /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,458 easyblock.py:851 INFO Found file dreamerr_1.4.0.tar.gz at /eb/maint/sources/r/R-bundle-CRAN/extensions/dreamerr_1.4.0.tar.gz | |
== 2024-06-26 11:40:47,458 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,460 easyblock.py:679 INFO md5 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/dreamerr_1.4.0.tar.gz: df2e0c5e9378f06e81f48a71389bb692 | |
== 2024-06-26 11:40:47,460 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,463 easyblock.py:679 INFO sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/dreamerr_1.4.0.tar.gz: 3e5e4afd10623b6dac6bb9b8bf0480d41c7422884cfec2d9d9786414f9026a87 | |
== 2024-06-26 11:40:47,463 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-06-26 11:40:47,463 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,466 filetools.py:1307 DEBUG Computed sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/dreamerr_1.4.0.tar.gz: 3e5e4afd10623b6dac6bb9b8bf0480d41c7422884cfec2d9d9786414f9026a87 (correct checksum: 3e5e4afd10623b6dac6bb9b8bf0480d41c7422884cfec2d9d9786414f9026a87) | |
== 2024-06-26 11:40:47,466 easyblock.py:685 INFO Checksum for extension source dreamerr_1.4.0.tar.gz verified | |
== 2024-06-26 11:40:47,466 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-06-26 11:40:47,466 easyblock.py:726 DEBUG No patches found for extension dreamerr. | |
== 2024-06-26 11:40:47,466 templates.py:201 DEBUG config: {'name': 'fixest', 'version': '0.12.1', 'options': {'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s', 'https://cran.r-project.org/src/contrib/', 'https://cran.freestatistics.org/src/contrib'], 'source_tmpl': '%(name)s_%(version)s.tar.gz', 'checksums': ['7ce71ab9856b17000aae7dd578b1b99a43fee35116500626005056b4d9e713df']}, 'easyblock': None} | |
== 2024-06-26 11:40:47,466 templates.py:231 DEBUG version found in easyconfig is 0.12.1 | |
== 2024-06-26 11:40:47,466 templates.py:333 DEBUG name: name, config: fixest | |
== 2024-06-26 11:40:47,467 templates.py:333 DEBUG name: version, config: 0.12.1 | |
== 2024-06-26 11:40:47,467 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for fixest_0.12.1.tar.gz: /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN | |
== 2024-06-26 11:40:47,467 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /eb/maint/software/EasyBuild/4.9.2/bin/eb | |
== 2024-06-26 11:40:47,467 tools.py:288 INFO Also considering installation prefix /eb/maint/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/easybuild/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/files_pr20898/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/fake_vsc__p48v_u7/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:303 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2024-06-26 11:40:47,467 tools.py:307 DEBUG Added easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,468 tools.py:307 DEBUG Added /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,469 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN | |
== 2024-06-26 11:40:47,469 easyblock.py:938 DEBUG Trying to download file fixest_0.12.1.tar.gz from https://cran.r-project.org/src/contrib/Archive/fixest/fixest_0.12.1.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz ... | |
== 2024-06-26 11:40:47,469 filetools.py:752 DEBUG Trying to download fixest_0.12.1.tar.gz from https://cran.r-project.org/src/contrib/Archive/fixest/fixest_0.12.1.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz | |
== 2024-06-26 11:40:47,469 filetools.py:755 DEBUG Using timeout of 10 seconds for initiating download | |
== 2024-06-26 11:40:47,469 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:47,591 filetools.py:832 WARNING URL https://cran.r-project.org/src/contrib/Archive/fixest/fixest_0.12.1.tar.gz was not found (HTTP response code 404), not trying again | |
== 2024-06-26 11:40:47,593 filetools.py:859 WARNING Download of https://cran.r-project.org/src/contrib/Archive/fixest/fixest_0.12.1.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz failed, done trying | |
== 2024-06-26 11:40:47,602 easyblock.py:938 DEBUG Trying to download file fixest_0.12.1.tar.gz from https://cran.r-project.org/src/contrib/fixest_0.12.1.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz ... | |
== 2024-06-26 11:40:47,603 filetools.py:752 DEBUG Trying to download fixest_0.12.1.tar.gz from https://cran.r-project.org/src/contrib/fixest_0.12.1.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz | |
== 2024-06-26 11:40:47,603 filetools.py:755 DEBUG Using timeout of 10 seconds for initiating download | |
== 2024-06-26 11:40:47,603 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:47,723 filetools.py:815 DEBUG HTTP response code for given url https://cran.r-project.org/src/contrib/fixest_0.12.1.tar.gz: 200 | |
== 2024-06-26 11:40:47,723 filetools.py:816 INFO File size for https://cran.r-project.org/src/contrib/fixest_0.12.1.tar.gz: 2325402 | |
== 2024-06-26 11:40:47,723 filetools.py:270 INFO Not showing progress bar for downloading small file (size 2325402) | |
== 2024-06-26 11:40:47,723 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:47,919 filetools.py:823 INFO Downloaded file fixest_0.12.1.tar.gz from url https://cran.r-project.org/src/contrib/fixest_0.12.1.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz | |
== 2024-06-26 11:40:47,919 filetools.py:855 INFO Successful download of file fixest_0.12.1.tar.gz from url https://cran.r-project.org/src/contrib/fixest_0.12.1.tar.gz to path /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz | |
== 2024-06-26 11:40:47,925 easyblock.py:951 INFO Successfully downloaded source file fixest_0.12.1.tar.gz from https://cran.r-project.org/src/contrib/fixest_0.12.1.tar.gz | |
== 2024-06-26 11:40:47,926 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,929 easyblock.py:679 INFO md5 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz: fb9d278858abd82781a01b2fc0ed9b8c | |
== 2024-06-26 11:40:47,930 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,935 easyblock.py:679 INFO sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz: 7ce71ab9856b17000aae7dd578b1b99a43fee35116500626005056b4d9e713df | |
== 2024-06-26 11:40:47,935 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-06-26 11:40:47,935 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,941 filetools.py:1307 DEBUG Computed sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/fixest_0.12.1.tar.gz: 7ce71ab9856b17000aae7dd578b1b99a43fee35116500626005056b4d9e713df (correct checksum: 7ce71ab9856b17000aae7dd578b1b99a43fee35116500626005056b4d9e713df) | |
== 2024-06-26 11:40:47,941 easyblock.py:685 INFO Checksum for extension source fixest_0.12.1.tar.gz verified | |
== 2024-06-26 11:40:47,941 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-06-26 11:40:47,941 easyblock.py:726 DEBUG No patches found for extension fixest. | |
== 2024-06-26 11:40:47,941 templates.py:201 DEBUG config: {'name': 'cmna', 'version': '1.0.5', 'options': {'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s', 'https://cran.r-project.org/src/contrib/', 'https://cran.freestatistics.org/src/contrib'], 'source_tmpl': '%(name)s_%(version)s.tar.gz', 'checksums': ['7cf99880cb70e8fd0b022184167888b1ad32dca503e0250c1d552a84f0613898']}, 'easyblock': None} | |
== 2024-06-26 11:40:47,941 templates.py:231 DEBUG version found in easyconfig is 1.0.5 | |
== 2024-06-26 11:40:47,941 templates.py:333 DEBUG name: name, config: cmna | |
== 2024-06-26 11:40:47,941 templates.py:333 DEBUG name: version, config: 1.0.5 | |
== 2024-06-26 11:40:47,942 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for cmna_1.0.5.tar.gz: /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN | |
== 2024-06-26 11:40:47,942 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /eb/maint/software/EasyBuild/4.9.2/bin/eb | |
== 2024-06-26 11:40:47,942 tools.py:288 INFO Also considering installation prefix /eb/maint/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/easybuild/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/files_pr20898/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/fake_vsc__p48v_u7/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:307 DEBUG Added easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,942 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,943 tools.py:307 DEBUG Added /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,944 easyblock.py:851 INFO Found file cmna_1.0.5.tar.gz at /eb/maint/sources/r/R-bundle-CRAN/extensions/cmna_1.0.5.tar.gz | |
== 2024-06-26 11:40:47,944 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,944 easyblock.py:679 INFO md5 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/cmna_1.0.5.tar.gz: 03b0945df803479bc8d88322e58e18a4 | |
== 2024-06-26 11:40:47,944 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,944 easyblock.py:679 INFO sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/cmna_1.0.5.tar.gz: 7cf99880cb70e8fd0b022184167888b1ad32dca503e0250c1d552a84f0613898 | |
== 2024-06-26 11:40:47,944 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-06-26 11:40:47,945 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,945 filetools.py:1307 DEBUG Computed sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/cmna_1.0.5.tar.gz: 7cf99880cb70e8fd0b022184167888b1ad32dca503e0250c1d552a84f0613898 (correct checksum: 7cf99880cb70e8fd0b022184167888b1ad32dca503e0250c1d552a84f0613898) | |
== 2024-06-26 11:40:47,945 easyblock.py:685 INFO Checksum for extension source cmna_1.0.5.tar.gz verified | |
== 2024-06-26 11:40:47,945 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-06-26 11:40:47,945 easyblock.py:726 DEBUG No patches found for extension cmna. | |
== 2024-06-26 11:40:47,945 templates.py:201 DEBUG config: {'name': 'XBRL', 'version': '0.99.19.1', 'options': {'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s', 'https://cran.r-project.org/src/contrib/', 'https://cran.freestatistics.org/src/contrib'], 'source_tmpl': '%(name)s_%(version)s.tar.gz', 'checksums': ['ad9ebb5431bdfecc38b8bf3b2552f1a048878a9ac02f5a9d71279b3b099a9757']}, 'easyblock': None} | |
== 2024-06-26 11:40:47,945 templates.py:231 DEBUG version found in easyconfig is 0.99.19.1 | |
== 2024-06-26 11:40:47,945 templates.py:333 DEBUG name: name, config: XBRL | |
== 2024-06-26 11:40:47,945 templates.py:333 DEBUG name: version, config: 0.99.19.1 | |
== 2024-06-26 11:40:47,945 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for XBRL_0.99.19.1.tar.gz: /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN | |
== 2024-06-26 11:40:47,946 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /eb/maint/software/EasyBuild/4.9.2/bin/eb | |
== 2024-06-26 11:40:47,946 tools.py:288 INFO Also considering installation prefix /eb/maint/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/easybuild/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/files_pr20898/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/fake_vsc__p48v_u7/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:307 DEBUG Added easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,946 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 tools.py:307 DEBUG Added /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,947 easyblock.py:851 INFO Found file XBRL_0.99.19.1.tar.gz at /eb/maint/sources/r/R-bundle-CRAN/extensions/XBRL_0.99.19.1.tar.gz | |
== 2024-06-26 11:40:47,948 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,948 easyblock.py:679 INFO md5 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/XBRL_0.99.19.1.tar.gz: 58452df50e1ac4325b9ee67eb37fdc38 | |
== 2024-06-26 11:40:47,948 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,948 easyblock.py:679 INFO sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/XBRL_0.99.19.1.tar.gz: ad9ebb5431bdfecc38b8bf3b2552f1a048878a9ac02f5a9d71279b3b099a9757 | |
== 2024-06-26 11:40:47,948 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-06-26 11:40:47,948 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:47,948 filetools.py:1307 DEBUG Computed sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/XBRL_0.99.19.1.tar.gz: ad9ebb5431bdfecc38b8bf3b2552f1a048878a9ac02f5a9d71279b3b099a9757 (correct checksum: ad9ebb5431bdfecc38b8bf3b2552f1a048878a9ac02f5a9d71279b3b099a9757) | |
== 2024-06-26 11:40:47,949 easyblock.py:685 INFO Checksum for extension source XBRL_0.99.19.1.tar.gz verified | |
== 2024-06-26 11:40:47,949 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-06-26 11:40:47,949 easyblock.py:726 DEBUG No patches found for extension XBRL. | |
== 2024-06-26 11:40:47,949 templates.py:201 DEBUG config: {'name': 'rhandsontable', 'version': '0.3.8', 'options': {'source_urls': ['https://cran.r-project.org/src/contrib/Archive/%(name)s', 'https://cran.r-project.org/src/contrib/', 'https://cran.freestatistics.org/src/contrib'], 'source_tmpl': '%(name)s_%(version)s.tar.gz', 'checksums': ['901ed9c59936f7fa52ad8db3111c8904ab962f9c74f1b6cd40f81683af35d21d']}, 'easyblock': None} | |
== 2024-06-26 11:40:47,949 templates.py:231 DEBUG version found in easyconfig is 0.3.8 | |
== 2024-06-26 11:40:47,949 templates.py:333 DEBUG name: name, config: rhandsontable | |
== 2024-06-26 11:40:47,949 templates.py:333 DEBUG name: version, config: 0.3.8 | |
== 2024-06-26 11:40:47,949 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for rhandsontable_0.3.8.tar.gz: /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN | |
== 2024-06-26 11:40:47,949 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /eb/maint/software/EasyBuild/4.9.2/bin/eb | |
== 2024-06-26 11:40:47,949 tools.py:288 INFO Also considering installation prefix /eb/maint/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-06-26 11:40:47,949 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/easybuild/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,949 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/local/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/files_pr20898/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-cz9x2qy5/fake_vsc__p48v_u7/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:307 DEBUG Added easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/software/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,950 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,951 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,951 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,951 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,951 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,951 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-06-26 11:40:47,951 tools.py:307 DEBUG Added /eb/maint/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-06-26 11:40:47,951 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN | |
== 2024-06-26 11:40:47,952 easyblock.py:938 DEBUG Trying to download file rhandsontable_0.3.8.tar.gz from https://cran.r-project.org/src/contrib/Archive/rhandsontable/rhandsontable_0.3.8.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz ... | |
== 2024-06-26 11:40:47,952 filetools.py:752 DEBUG Trying to download rhandsontable_0.3.8.tar.gz from https://cran.r-project.org/src/contrib/Archive/rhandsontable/rhandsontable_0.3.8.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz | |
== 2024-06-26 11:40:47,952 filetools.py:755 DEBUG Using timeout of 10 seconds for initiating download | |
== 2024-06-26 11:40:47,952 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:48,072 filetools.py:832 WARNING URL https://cran.r-project.org/src/contrib/Archive/rhandsontable/rhandsontable_0.3.8.tar.gz was not found (HTTP response code 404), not trying again | |
== 2024-06-26 11:40:48,074 filetools.py:859 WARNING Download of https://cran.r-project.org/src/contrib/Archive/rhandsontable/rhandsontable_0.3.8.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz failed, done trying | |
== 2024-06-26 11:40:48,084 easyblock.py:938 DEBUG Trying to download file rhandsontable_0.3.8.tar.gz from https://cran.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz ... | |
== 2024-06-26 11:40:48,085 filetools.py:752 DEBUG Trying to download rhandsontable_0.3.8.tar.gz from https://cran.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz | |
== 2024-06-26 11:40:48,085 filetools.py:755 DEBUG Using timeout of 10 seconds for initiating download | |
== 2024-06-26 11:40:48,085 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:48,208 filetools.py:815 DEBUG HTTP response code for given url https://cran.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz: 200 | |
== 2024-06-26 11:40:48,209 filetools.py:816 INFO File size for https://cran.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz: 3625884 | |
== 2024-06-26 11:40:48,209 filetools.py:270 INFO Not showing progress bar for downloading small file (size 3625884) | |
== 2024-06-26 11:40:48,209 filetools.py:1931 DEBUG Not creating existing path /eb/maint/sources/r/R-bundle-CRAN/extensions | |
== 2024-06-26 11:40:48,440 filetools.py:823 INFO Downloaded file rhandsontable_0.3.8.tar.gz from url https://cran.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz to /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz | |
== 2024-06-26 11:40:48,440 filetools.py:855 INFO Successful download of file rhandsontable_0.3.8.tar.gz from url https://cran.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz to path /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz | |
== 2024-06-26 11:40:48,444 easyblock.py:951 INFO Successfully downloaded source file rhandsontable_0.3.8.tar.gz from https://cran.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz | |
== 2024-06-26 11:40:48,444 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:48,450 easyblock.py:679 INFO md5 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz: 349303d13b2915de63f6d6e2fa9eb51e | |
== 2024-06-26 11:40:48,450 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:48,459 easyblock.py:679 INFO sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz: 901ed9c59936f7fa52ad8db3111c8904ab962f9c74f1b6cd40f81683af35d21d | |
== 2024-06-26 11:40:48,459 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-06-26 11:40:48,459 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-06-26 11:40:48,467 filetools.py:1307 DEBUG Computed sha256 checksum for /eb/maint/sources/r/R-bundle-CRAN/extensions/rhandsontable_0.3.8.tar.gz: 901ed9c59936f7fa52ad8db3111c8904ab962f9c74f1b6cd40f81683af35d21d (correct checksum: 901ed9c59936f7fa52ad8db3111c8904ab962f9c74f1b6cd40f81683af35d21d) | |
== 2024-06-26 11:40:48,467 easyblock.py:685 INFO Checksum for extension source rhandsontable_0.3.8.tar.gz verified | |
== 2024-06-26 11:40:48,468 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-06-26 11:40:48,468 easyblock.py:726 DEBUG No patches found for extension rhandsontable. | |
== 2024-06-26 11:40:48,468 easyconfig.py:2642 DEBUG Determining full module name for R-bundle-CRAN EasyConfig @ /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb (force_visible: False) | |
== 2024-06-26 11:40:48,468 easyconfig.py:2619 DEBUG No alternative software name specified to determine module name with | |
== 2024-06-26 11:40:48,468 utilities.py:115 DEBUG Module name R-bundle-CRAN/2024.06-foss-2023b validated | |
== 2024-06-26 11:40:48,468 easyconfig.py:2650 DEBUG Obtained valid full module name R-bundle-CRAN/2024.06-foss-2023b | |
== 2024-06-26 11:40:48,468 config.py:700 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /eb/maint/modules | |
== 2024-06-26 11:40:48,468 easyblock.py:2446 INFO Checking dirs that need to be created: ['/eb/maint/software/R-bundle-CRAN/2024.06-foss-2023b', '/eb/maint/modules/all/R-bundle-CRAN', '/eb/maint/modules/lang/R-bundle-CRAN'] | |
== 2024-06-26 11:40:48,468 filetools.py:1912 INFO Creating directory /eb/maint/software/R-bundle-CRAN/2024.06-foss-2023b (parents: True, set_gid: False, sticky: False) | |
== 2024-06-26 11:40:48,469 filetools.py:1931 DEBUG Not creating existing path /eb/maint/modules/all/R-bundle-CRAN | |
== 2024-06-26 11:40:48,469 filetools.py:1931 DEBUG Not creating existing path /eb/maint/modules/lang/R-bundle-CRAN | |
== 2024-06-26 11:40:48,469 build_log.py:267 INFO ... (took 1 min 30 secs) | |
== 2024-06-26 11:40:48,472 easyblock.py:3942 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-06-26 11:40:48,472 build_log.py:267 INFO creating build dir, resetting environment... | |
== 2024-06-26 11:40:48,475 easyblock.py:3950 INFO Starting ready step | |
== 2024-06-26 11:40:48,475 easyconfig.py:1702 INFO Generating template values... | |
== 2024-06-26 11:40:48,475 templates.py:201 DEBUG config: R-bundle-CRAN EasyConfig @ /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb | |
== 2024-06-26 11:40:48,475 templates.py:231 DEBUG version found in easyconfig is 2024.06 | |
== 2024-06-26 11:40:48,475 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,475 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,475 templates.py:333 DEBUG name: name, config: R-bundle-CRAN | |
== 2024-06-26 11:40:48,475 templates.py:333 DEBUG name: parallel, config: None | |
== 2024-06-26 11:40:48,475 templates.py:333 DEBUG name: version, config: 2024.06 | |
== 2024-06-26 11:40:48,475 templates.py:333 DEBUG name: versionsuffix, config: | |
== 2024-06-26 11:40:48,476 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-06-26 11:40:48,476 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-06-26 11:40:48,476 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-06-26 11:40:48,476 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='r-bundle-cran', builddir='/dev/shm/RbundleCRAN/2024.06/foss-2023b', github_account='r-bundle-cran', installdir='/eb/maint/software/R-bundle-CRAN/2024.06-foss-2023b', module_name='R-bundle-CRAN/2024.06-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='R-bundle-CRAN', nameletter='R', nameletterlower='r', namelower='r-bundle-cran', rmajver='4', rminver='4', rshortver='4.4', rver='4.4.1', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='2024.06', version_major='2024', version_major_minor='2024.06', version_minor='06', versionprefix='', versionsuffix='' | |
== 2024-06-26 11:40:48,476 easyblock.py:3958 INFO Running method check_readiness_step part of step ready | |
== 2024-06-26 11:40:48,476 easyblock.py:2246 DEBUG Desired parallelism specified via 'parallel' build option: None | |
== 2024-06-26 11:40:48,476 easyblock.py:2255 INFO Setting parallelism: 8 | |
== 2024-06-26 11:40:48,476 modules.py:814 DEBUG Current MODULEPATH: /eb/maint/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2024-06-26 11:40:48,476 modules.py:828 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /home/software/src/github/easybuild-easyconfigs | |
== 2024-06-26 11:40:48,535 modules.py:835 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: import os | |
os.environ["MODULEPATH"] = "/eb/maint/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "ZHVsZXMvYWxsIiwgIi9ldGMvbW9kdWxlZmlsZXMiLCAiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcyIsICIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwgIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsICIvdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIiwKfSwKc3lzdGVtQmFzZU1QQVRIID0gIi9ldGMvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlczovZWIvbWFpbnQvbW9kdWxlcy9hbGw6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: EasyBuild/4.9.2 | |
== 2024-06-26 11:40:48,536 modules.py:1471 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
== 2024-06-26 11:40:48,538 easyblock.py:2307 WARNING Loaded modules detected: ['EasyBuild/4.9.2'] | |
== 2024-06-26 11:40:48,538 easyblock.py:3958 INFO Running method make_builddir part of step ready | |
== 2024-06-26 11:40:48,539 easyblock.py:1066 DEBUG Creating the build directory /dev/shm/RbundleCRAN/2024.06/foss-2023b (cleanup: True) | |
== 2024-06-26 11:40:48,539 filetools.py:1912 INFO Creating directory /dev/shm/RbundleCRAN/2024.06/foss-2023b (parents: True, set_gid: False, sticky: False) | |
== 2024-06-26 11:40:48,549 easyblock.py:3958 INFO Running method reset_env part of step ready | |
== 2024-06-26 11:40:48,550 easyblock.py:3958 INFO Running method handle_iterate_opts part of step ready | |
== 2024-06-26 11:40:48,550 easyconfig.py:1702 INFO Generating template values... | |
== 2024-06-26 11:40:48,550 templates.py:201 DEBUG config: R-bundle-CRAN EasyConfig @ /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb | |
== 2024-06-26 11:40:48,550 templates.py:231 DEBUG version found in easyconfig is 2024.06 | |
== 2024-06-26 11:40:48,551 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,551 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,551 templates.py:333 DEBUG name: name, config: R-bundle-CRAN | |
== 2024-06-26 11:40:48,551 templates.py:333 DEBUG name: parallel, config: 8 | |
== 2024-06-26 11:40:48,551 templates.py:333 DEBUG name: version, config: 2024.06 | |
== 2024-06-26 11:40:48,551 templates.py:333 DEBUG name: versionsuffix, config: | |
== 2024-06-26 11:40:48,551 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-06-26 11:40:48,551 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-06-26 11:40:48,551 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-06-26 11:40:48,551 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='r-bundle-cran', builddir='/dev/shm/RbundleCRAN/2024.06/foss-2023b', github_account='r-bundle-cran', installdir='/eb/maint/software/R-bundle-CRAN/2024.06-foss-2023b', module_name='R-bundle-CRAN/2024.06-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='R-bundle-CRAN', nameletter='R', nameletterlower='r', namelower='r-bundle-cran', parallel='8', rmajver='4', rminver='4', rshortver='4.4', rver='4.4.1', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='2024.06', version_major='2024', version_major_minor='2024.06', version_minor='06', versionprefix='', versionsuffix='' | |
== 2024-06-26 11:40:48,552 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-06-26 11:40:48,555 easyblock.py:3942 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-06-26 11:40:48,555 build_log.py:267 INFO unpacking... | |
== 2024-06-26 11:40:48,557 easyblock.py:3950 INFO Starting source step | |
== 2024-06-26 11:40:48,558 easyconfig.py:1702 INFO Generating template values... | |
== 2024-06-26 11:40:48,558 templates.py:201 DEBUG config: R-bundle-CRAN EasyConfig @ /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb | |
== 2024-06-26 11:40:48,558 templates.py:231 DEBUG version found in easyconfig is 2024.06 | |
== 2024-06-26 11:40:48,558 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,558 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,558 templates.py:333 DEBUG name: name, config: R-bundle-CRAN | |
== 2024-06-26 11:40:48,558 templates.py:333 DEBUG name: parallel, config: 8 | |
== 2024-06-26 11:40:48,558 templates.py:333 DEBUG name: version, config: 2024.06 | |
== 2024-06-26 11:40:48,558 templates.py:333 DEBUG name: versionsuffix, config: | |
== 2024-06-26 11:40:48,558 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-06-26 11:40:48,558 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-06-26 11:40:48,558 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-06-26 11:40:48,559 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='r-bundle-cran', builddir='/dev/shm/RbundleCRAN/2024.06/foss-2023b', github_account='r-bundle-cran', installdir='/eb/maint/software/R-bundle-CRAN/2024.06-foss-2023b', module_name='R-bundle-CRAN/2024.06-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='R-bundle-CRAN', nameletter='R', nameletterlower='r', namelower='r-bundle-cran', parallel='8', rmajver='4', rminver='4', rshortver='4.4', rver='4.4.1', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='2024.06', version_major='2024', version_major_minor='2024.06', version_minor='06', versionprefix='', versionsuffix='' | |
== 2024-06-26 11:40:48,559 easyblock.py:3958 INFO Running method checksum_step part of step source | |
== 2024-06-26 11:40:48,559 easyblock.py:3958 INFO Running method extract_step part of step source | |
== 2024-06-26 11:40:48,559 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-06-26 11:40:48,562 easyblock.py:3942 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-06-26 11:40:48,562 build_log.py:267 INFO patching... | |
== 2024-06-26 11:40:48,564 easyblock.py:3950 INFO Starting patch step | |
== 2024-06-26 11:40:48,564 easyconfig.py:1702 INFO Generating template values... | |
== 2024-06-26 11:40:48,564 templates.py:201 DEBUG config: R-bundle-CRAN EasyConfig @ /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb | |
== 2024-06-26 11:40:48,565 templates.py:231 DEBUG version found in easyconfig is 2024.06 | |
== 2024-06-26 11:40:48,565 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,565 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,565 templates.py:333 DEBUG name: name, config: R-bundle-CRAN | |
== 2024-06-26 11:40:48,565 templates.py:333 DEBUG name: parallel, config: 8 | |
== 2024-06-26 11:40:48,565 templates.py:333 DEBUG name: version, config: 2024.06 | |
== 2024-06-26 11:40:48,565 templates.py:333 DEBUG name: versionsuffix, config: | |
== 2024-06-26 11:40:48,565 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-06-26 11:40:48,565 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-06-26 11:40:48,565 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-06-26 11:40:48,565 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='r-bundle-cran', builddir='/dev/shm/RbundleCRAN/2024.06/foss-2023b', github_account='r-bundle-cran', installdir='/eb/maint/software/R-bundle-CRAN/2024.06-foss-2023b', module_name='R-bundle-CRAN/2024.06-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='R-bundle-CRAN', nameletter='R', nameletterlower='r', namelower='r-bundle-cran', parallel='8', rmajver='4', rminver='4', rshortver='4.4', rver='4.4.1', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='2024.06', version_major='2024', version_major_minor='2024.06', version_minor='06', versionprefix='', versionsuffix='' | |
== 2024-06-26 11:40:48,565 easyblock.py:3958 INFO Running method patch_step part of step patch | |
== 2024-06-26 11:40:48,565 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-06-26 11:40:48,568 easyblock.py:3942 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-06-26 11:40:48,568 build_log.py:267 INFO preparing... | |
== 2024-06-26 11:40:48,571 easyblock.py:3950 INFO Starting prepare step | |
== 2024-06-26 11:40:48,571 easyconfig.py:1702 INFO Generating template values... | |
== 2024-06-26 11:40:48,571 templates.py:201 DEBUG config: R-bundle-CRAN EasyConfig @ /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb | |
== 2024-06-26 11:40:48,571 templates.py:231 DEBUG version found in easyconfig is 2024.06 | |
== 2024-06-26 11:40:48,571 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,571 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-06-26 11:40:48,571 templates.py:333 DEBUG name: name, config: R-bundle-CRAN | |
== 2024-06-26 11:40:48,571 templates.py:333 DEBUG name: parallel, config: 8 | |
== 2024-06-26 11:40:48,571 templates.py:333 DEBUG name: version, config: 2024.06 | |
== 2024-06-26 11:40:48,571 templates.py:333 DEBUG name: versionsuffix, config: | |
== 2024-06-26 11:40:48,572 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-06-26 11:40:48,572 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-06-26 11:40:48,572 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-06-26 11:40:48,580 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='r-bundle-cran', builddir='/dev/shm/RbundleCRAN/2024.06/foss-2023b', github_account='r-bundle-cran', installdir='/eb/maint/software/R-bundle-CRAN/2024.06-foss-2023b', module_name='R-bundle-CRAN/2024.06-foss-2023b', mpi_cmd_prefix='mpirun -n 1', name='R-bundle-CRAN', nameletter='R', nameletterlower='r', namelower='r-bundle-cran', parallel='8', rmajver='4', rminver='4', rshortver='4.4', rver='4.4.1', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='2024.06', version_major='2024', version_major_minor='2024.06', version_minor='06', versionprefix='', versionsuffix='' | |
== 2024-06-26 11:40:48,580 easyblock.py:3958 INFO Running method prepare_step part of step prepare | |
== 2024-06-26 11:40:48,580 easyconfig.py:2710 DEBUG Determining initial module paths for R-bundle-CRAN EasyConfig @ /tmp/eb-cz9x2qy5/files_pr20898/r/R-bundle-CRAN/R-bundle-CRAN-2024.06-foss-2023b.eb | |
== 2024-06-26 11:40:48,580 easyconfig.py:2712 DEBUG Obtained initial module paths: [] | |
== 2024-06-26 11:40:48,581 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'pkgconf/2.0.3-GCCcore-13.2.0', 'short_mod_name': 'pkgconf/2.0.3-GCCcore-13.2.0', 'name': 'pkgconf', 'version': '2.0.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Xvfb/21.1.9-GCCcore-13.2.0', 'short_mod_name': 'Xvfb/21.1.9-GCCcore-13.2.0', 'name': 'Xvfb', 'version': '21.1.9', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Autotools/20220317-GCCcore-13.2.0', 'short_mod_name': 'Autotools/20220317-GCCcore-13.2.0', 'name': 'Autotools', 'version': '20220317', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CMake/3.27.6-GCCcore-13.2.0', 'short_mod_name': 'CMake/3.27.6-GCCcore-13.2.0', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'R/4.4.1-gfbf-2023b', 'short_mod_name': 'R/4.4.1-gfbf-2023b', 'name': 'R', 'version': '4.4.1', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libxml2/2.11.5-GCCcore-13.2.0', 'short_mod_name': 'libxml2/2.11.5-GCCcore-13.2.0', 'name': 'libxml2', 'version': '2.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GMP/6.3.0-GCCcore-13.2.0', 'short_mod_name': 'GMP/6.3.0-GCCcore-13.2.0', 'name': 'GMP', 'version': '6.3.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'NLopt/2.7.1-GCCcore-13.2.0', 'short_mod_name': 'NLopt/2.7.1-GCCcore-13.2.0', 'name': 'NLopt', 'version': '2.7.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'FFTW/3.3.10-GCC-13.2.0', 'short_mod_name': 'FFTW/3.3.10-GCC-13.2.0', 'name': 'FFTW', 'version': '3.3.10', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libsndfile/1.2.2-GCCcore-13.2.0', 'short_mod_name': 'libsndfile/1.2.2-GCCcore-13.2.0', 'name': 'libsndfile', 'version': '1.2.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'ICU/74.1-GCCcore-13.2.0', 'short_mod_name': 'ICU/74.1-GCCcore-13.2.0', 'name': 'ICU', 'version': '74.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'HDF5/1.14.3-gompi-2023b', 'short_mod_name': 'HDF5/1.14.3-gompi-2023b', 'name': 'HDF5', 'version': '1.14.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'UDUNITS/2.2.28-GCCcore-13.2.0', 'short_mod_name': 'UDUNITS/2.2.28-GCCcore-13.2.0', 'name': 'UDUNITS', 'version': '2.2.28', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GSL/2.7-GCC-13.2.0', 'short_mod_name': 'GSL/2.7-GCC-13.2.0', 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'ImageMagick/7.1.1-34-GCCcore-13.2.0', 'short_mod_name': 'ImageMagick/7.1.1-34-GCCcore-13.2.0', 'name': 'ImageMagick', 'version': '7.1.1-34', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GLPK/5.0-GCCcore-13.2.0', 'short_mod_name': 'GLPK/5.0-GCCcore-13.2.0', 'name': 'GLPK', 'version': '5.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'nodejs/20.9.0-GCCcore-13.2.0', 'short_mod_name': 'nodejs/20.9.0-GCCcore-13.2.0', 'name': 'nodejs', 'version': '20.9.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GDAL/3.9.0-foss-2023b', 'short_mod_name': 'GDAL/3.9.0-foss-2023b', 'name': 'GDAL', 'version': '3.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPFR/4.2.1-GCCcore-13.2.0', 'short_mod_name': 'MPFR/4.2.1-GCCcore-13.2.0', 'name': 'MPFR', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PostgreSQL/16.1-GCCcore-13.2.0', 'short_mod_name': 'PostgreSQL/16.1-GCCcore-13.2.0', 'name': 'PostgreSQL', 'version': '16.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-06-26 11:40:48,581 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'pkgconf/2.0.3-GCCcore-13.2.0', 'short_mod_name': 'pkgconf/2.0.3-GCCcore-13.2.0', 'name': 'pkgconf', 'version': '2.0.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Xvfb/21.1.9-GCCcore-13.2.0', 'short_mod_name': 'Xvfb/21.1.9-GCCcore-13.2.0', 'name': 'Xvfb', 'version': '21.1.9', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Autotools/20220317-GCCcore-13.2.0', 'short_mod_name': 'Autotools/20220317-GCCcore-13.2.0', 'name': 'Autotools', 'version': '20220317', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CMake/3.27.6-GCCcore-13.2.0', 'short_mod_name': 'CMake/3.27.6-GCCcore-13.2.0', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'R/4.4.1-gfbf-2023b', 'short_mod_name': 'R/4.4.1-gfbf-2023b', 'name': 'R', 'version': '4.4.1', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libxml2/2.11.5-GCCcore-13.2.0', 'short_mod_name': 'libxml2/2.11.5-GCCcore-13.2.0', 'name': 'libxml2', 'version': '2.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GMP/6.3.0-GCCcore-13.2.0', 'short_mod_name': 'GMP/6.3.0-GCCcore-13.2.0', 'name': 'GMP', 'version': '6.3.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'NLopt/2.7.1-GCCcore-13.2.0', 'short_mod_name': 'NLopt/2.7.1-GCCcore-13.2.0', 'name': 'NLopt', 'version': '2.7.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'FFTW/3.3.10-GCC-13.2.0', 'short_mod_name': 'FFTW/3.3.10-GCC-13.2.0', 'name': 'FFTW', 'version': '3.3.10', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libsndfile/1.2.2-GCCcore-13.2.0', 'short_mod_name': 'libsndfile/1.2.2-GCCcore-13.2.0', 'name': 'libsndfile', 'version': '1.2.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'ICU/74.1-GCCcore-13.2.0', 'short_mod_name': 'ICU/74.1-GCCcore-13.2.0', 'name': 'ICU', 'version': '74.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'HDF5/1.14.3-gompi-2023b', 'short_mod_name': 'HDF5/1.14.3-gompi-2023b', 'name': 'HDF5', 'version': '1.14.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'UDUNITS/2.2.28-GCCcore-13.2.0', 'short_mod_name': 'UDUNITS/2.2.28-GCCcore-13.2.0', 'name': 'UDUNITS', 'version': '2.2.28', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GSL/2.7-GCC-13.2.0', 'short_mod_name': 'GSL/2.7-GCC-13.2.0', 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'ImageMagick/7.1.1-34-GCCcore-13.2.0', 'short_mod_name': 'ImageMagick/7.1.1-34-GCCcore-13.2.0', 'name': 'ImageMagick', 'version': '7.1.1-34', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GLPK/5.0-GCCcore-13.2.0', 'short_mod_name': 'GLPK/5.0-GCCcore-13.2.0', 'name': 'GLPK', 'version': '5.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'nodejs/20.9.0-GCCcore-13.2.0', 'short_mod_name': 'nodejs/20.9.0-GCCcore-13.2.0', 'name': 'nodejs', 'version': '20.9.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GDAL/3.9.0-foss-2023b', 'short_mod_name': 'GDAL/3.9.0-foss-2023b', 'name': 'GDAL', 'version': '3.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPFR/4.2.1-GCCcore-13.2.0', 'short_mod_name': 'MPFR/4.2.1-GCCcore-13.2.0', 'name': 'MPFR', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PostgreSQL/16.1-GCCcore-13.2.0', 'short_mod_name': 'PostgreSQL/16.1-GCCcore-13.2.0', 'name': 'PostgreSQL', 'version': '16.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-06-26 11:40:48,582 toolchain.py:527 DEBUG _check_dependencies: adding toolchain dependencies [{'full_mod_name': 'pkgconf/2.0.3-GCCcore-13.2.0', 'short_mod_name': 'pkgconf/2.0.3-GCCcore-13.2.0', 'name': 'pkgconf', 'version': '2.0.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Xvfb/21.1.9-GCCcore-13.2.0', 'short_mod_name': 'Xvfb/21.1.9-GCCcore-13.2.0', 'name': 'Xvfb', 'version': '21.1.9', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Autotools/20220317-GCCcore-13.2.0', 'short_mod_name': 'Autotools/20220317-GCCcore-13.2.0', 'name': 'Autotools', 'version': '20220317', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CMake/3.27.6-GCCcore-13.2.0', 'short_mod_name': 'CMake/3.27.6-GCCcore-13.2.0', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'R/4.4.1-gfbf-2023b', 'short_mod_name': 'R/4.4.1-gfbf-2023b', 'name': 'R', 'version': '4.4.1', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libxml2/2.11.5-GCCcore-13.2.0', 'short_mod_name': 'libxml2/2.11.5-GCCcore-13.2.0', 'name': 'libxml2', 'version': '2.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GMP/6.3.0-GCCcore-13.2.0', 'short_mod_name': 'GMP/6.3.0-GCCcore-13.2.0', 'name': 'GMP', 'version': '6.3.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'NLopt/2.7.1-GCCcore-13.2.0', 'short_mod_name': 'NLopt/2.7.1-GCCcore-13.2.0', 'name': 'NLopt', 'version': '2.7.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'FFTW/3.3.10-GCC-13.2.0', 'short_mod_name': 'FFTW/3.3.10-GCC-13.2.0', 'name': 'FFTW', 'version': '3.3.10', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libsndfile/1.2.2-GCCcore-13.2.0', 'short_mod_name': 'libsndfile/1.2.2-GCCcore-13.2.0', 'name': 'libsndfile', 'version': '1.2.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'ICU/74.1-GCCcore-13.2.0', 'short_mod_name': 'ICU/74.1-GCCcore-13.2.0', 'name': 'ICU', 'version': '74.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'HDF5/1.14.3-gompi-2023b', 'short_mod_name': 'HDF5/1.14.3-gompi-2023b', 'name': 'HDF5', 'version': '1.14.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'UDUNITS/2.2.28-GCCcore-13.2.0', 'short_mod_name': 'UDUNITS/2.2.28-GCCcore-13.2.0', 'name': 'UDUNITS', 'version': '2.2.28', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GSL/2.7-GCC-13.2.0', 'short_mod_name': 'GSL/2.7-GCC-13.2.0', 'name': 'GSL', 'version': '2.7', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'ImageMagick/7.1.1-34-GCCcore-13.2.0', 'short_mod_name': 'ImageMagick/7.1.1-34-GCCcore-13.2.0', 'name': 'ImageMagick', 'version': '7.1.1-34', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GLPK/5.0-GCCcore-13.2.0', 'short_mod_name': 'GLPK/5.0-GCCcore-13.2.0', 'name': 'GLPK', 'version': '5.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'nodejs/20.9.0-GCCcore-13.2.0', 'short_mod_name': 'nodejs/20.9.0-GCCcore-13.2.0', 'name': 'nodejs', 'version': '20.9.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'GDAL/3.9.0-foss-2023b', 'short_mod_name': 'GDAL/3.9.0-foss-2023b', 'name': 'GDAL', 'version': '3.9.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPFR/4.2.1-GCCcore-13.2.0', 'short_mod_name': 'MPFR/4.2.1-GCCcore-13.2.0', 'name': 'MPFR', 'version': '4.2.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PostgreSQL/16.1-GCCcore-13.2.0', 'short_mod_name': 'PostgreSQL/16.1-GCCcore-13.2.0', 'name': 'PostgreSQL', 'version': '16.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-06-26 11:40:48,582 toolchain.py:537 DEBUG _check_dependencies: MODULEPATH: /eb/maint/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2024-06-26 11:40:48,582 modules.py:492 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/eb/maint/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', '--show-hidden')': ['AFNI/18.3.00-foss-2018b-Python-3.6.6', 'AFNI/23.0.03-foss-2022a', 'AGAT/1.1.0-GCC-12.2.0', 'AGeNT/3.0.6', 'ALL/0.9.2-foss-2022b', 'AMOS/3.1.0-foss-2018b', 'AMPtk/1.5.4-foss-2021b', 'AMRFinderPlus/3.11.18-gompi-2021b', 'AMRFinderPlus/3.11.18-gompi-2022b', 'ANTLR/2.7.7-GCCcore-11.3.0-Java-11', 'ANTs/2.3.1-foss-2018b-Python-3.6.6', 'ANTs/2.5.0-foss-2022b', 'AOCC/3.0.0-GCCcore-10.2.0', 'AOCC/4.0.0-GCCcore-12.2.0', 'APR-util/1.6.1-GCCcore-11.3.0', 'APR/1.7.0-GCCcore-11.3.0', 'ARIBA/2.14.6-foss-2021a', 'ASCAT/3.1.2-foss-2022a-R-4.2.1', 'ASE/3.21.1-foss-2020a-Python-3.8.2', 'ASE/3.21.1-foss-2020b', 'ASE/3.22.1-foss-2022a', 'ASE/3.22.1-gomkl-2021a', 'ASE/3.22.1-intel-2022a', 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'spglib-python/2.0.0-intel-2022a', 'spglib/2.0.2-GCCcore-11.3.0', 'spoa/4.0.0-GCC-8.3.0', 'spoa/4.0.7-GCC-10.2.0', 'spoa/4.0.7-GCC-10.3.0', 'spoa/4.0.7-GCC-11.2.0', 'spoa/4.0.7-GCC-11.3.0', 'spoa/4.0.7-GCC-12.2.0', 'spoa/4.1.0-GCC-12.3.0', 'sradownloader/3.9-GCCcore-11.3.0', 'statsmodels/0.12.1-foss-2020b', 'statsmodels/0.12.2-foss-2021a', 'statsmodels/0.13.1-foss-2021b', 'statsmodels/0.13.1-foss-2022a', 'statsmodels/0.14.0-gfbf-2022b', 'statsmodels/0.14.1-gfbf-2023a', 'subunit/1.4.3-GCCcore-12.2.0', 'sympy/1.11.1-intel-2022a', 'sympy/1.12-gfbf-2023a', 'sympy/1.5.1-foss-2019b-Python-3.7.4', 'sympy/1.8-foss-2021a', 'synapseclient/3.0.0-GCCcore-12.2.0', 'tRNAscan-SE/2.0.12-GCC-11.2.0', 'tRNAscan-SE/2.0.12-foss-2022b', 'tabix/0.2.6-GCCcore-11.3.0', 'tabixpp/1.1.0-GCC-10.3.0', 'tabixpp/1.1.0-GCC-9.3.0', 'tabixpp/1.1.2-GCC-11.3.0', 'tabixpp/1.1.2-GCC-12.2.0', 'tama/0.2-foss-2021b-Python-2.7.18', 'tbb/2018_U5-GCCcore-7.3.0', 'tbb/2019_U4-GCCcore-8.2.0', 'tbb/2019_U9-GCCcore-8.3.0', 'tbb/2020.1-GCCcore-9.3.0', 'tbb/2020.3-GCCcore-10.2.0', 'tbb/2020.3-GCCcore-10.3.0', 'tbb/2020.3-GCCcore-11.2.0', 'tbb/2021.10.0-GCCcore-12.2.0', 'tbb/2021.5.0-GCCcore-11.3.0', 'tbl2asn/20200302-linux64', 'tbl2asn/20220427-linux64', 'tbl2asn/20230713-linux64', 'tcsh/6.20.00-GCCcore-6.4.0', 'tcsh/6.20.00-GCCcore-7.3.0', 'tcsh/6.24.01-GCCcore-11.3.0', 'tcsh/6.24.10-GCCcore-12.3.0', 'tensorboard/2.10.0-foss-2022a', 'tensorboard/2.15.1-gfbf-2023a', 'tensorboard/2.8.0-foss-2021a', 'tensorboard/2.8.0-fosscuda-2020b', 'tensorboardX/2.5.1-foss-2022a', 'tensorboardX/2.6.2.2-foss-2023a', 'tensorflow-probability/0.19.0-foss-2022a', 'terastructure/1.0-GCC-8.3.0', 'tesseract/4.1.0-GCCcore-10.3.0', 'tesseract/5.3.0-GCCcore-11.3.0', 'texinfo/6.6-GCCcore-8.2.0', 'texinfo/6.7-GCCcore-8.3.0', 'texlive/20230313-GCCcore-12.2.0', 'thirdorder/1.1.1-foss-2022a', 'tidymodels/1.1.0-foss-2022b', 'tiktoken/0.6.0-GCCcore-12.3.0', 'time/1.9-GCCcore-10.3.0', 'timm/0.6.13-foss-2022a-CUDA-11.7.0', 'tmap/20220502-GCC-11.2.0', 'tokenizers/0.15.2-GCCcore-12.3.0', 'torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0-CUDA-11.7.0', 'torchvision/0.10.0-fosscuda-2020b', 'torchvision/0.13.1-foss-2022a', 'torchvision/0.13.1-foss-2022a-CUDA-11.7.0', 'torchvision/0.3.0-foss-2019a-Python-3.7.2', 'tornado/6.3.2-GCCcore-12.3.0', 'tox/3.25.1-GCCcore-10.2.0', 'tox/3.25.1-GCCcore-11.3.0', 'tqdm/4.41.1-GCCcore-8.3.0', 'tqdm/4.47.0-GCCcore-9.3.0', 'tqdm/4.56.2-GCCcore-10.2.0', 'tqdm/4.60.0-GCCcore-10.2.0', 'tqdm/4.61.1-GCCcore-10.3.0', 'tqdm/4.61.2-GCCcore-10.3.0', 'tqdm/4.62.3-GCCcore-11.2.0', 'tqdm/4.64.0-GCCcore-11.3.0', 'tqdm/4.64.1-GCCcore-12.2.0', 'tqdm/4.66.1-GCCcore-12.3.0', 'tqdm/4.66.2-GCCcore-13.2.0', 'trimAl/1.4.1-GCCcore-11.3.0', 'trimesh/3.17.1-foss-2022a', 'turbinesFoam/20220516-foss-2020a-OpenFOAM-8', 'typing-extensions/3.10.0.0-GCCcore-10.3.0', 'typing-extensions/3.10.0.2-GCCcore-11.2.0', 'typing-extensions/3.7.4.3-GCCcore-10.2.0', 'typing-extensions/4.3.0-GCCcore-11.3.0', 'typing-extensions/4.9.0-GCCcore-12.3.0', 'umap-learn/0.5.3-foss-2022a', 'umap-learn/0.5.3-foss-2022b', 'umap-learn/0.5.5-foss-2023a', 'unimap/0.1-GCCcore-10.2.0', 'unixODBC/2.3.11-foss-2022b', 'unixODBC/2.3.12-foss-2022a', 'utf8proc/2.7.0-GCCcore-11.3.0', 'utf8proc/2.8.0-GCCcore-12.2.0', 'utf8proc/2.8.0-GCCcore-12.3.0', 'util-linux/2.31.1-GCCcore-6.4.0', 'util-linux/2.32-GCCcore-7.3.0', 'util-linux/2.33-GCCcore-8.2.0', 'util-linux/2.34-GCCcore-8.3.0', 'util-linux/2.35-GCCcore-9.3.0', 'util-linux/2.36-GCCcore-10.2.0', 'util-linux/2.36-GCCcore-10.3.0', 'util-linux/2.37-GCCcore-11.2.0', 'util-linux/2.38-GCCcore-11.3.0', 'util-linux/2.38.1-GCCcore-12.2.0', 'util-linux/2.39-GCCcore-12.3.0', 'util-linux/2.39-GCCcore-13.2.0', 'vcflib/1.0.2-GCC-9.3.0-Python-3.8.2', 'vcflib/1.0.3-foss-2021a-R-4.1.0', 'vcflib/1.0.9-foss-2022a-R-4.2.1', 'vcflib/1.0.9-foss-2022b-R-4.2.2', 'velocyto/0.17.17-foss-2022a', 'velocyto/0.17.17-foss-2023a', 'virtualenv/20.23.1-GCCcore-12.3.0', 'virtualenv/20.24.6-GCCcore-13.2.0', 'visdom/0.2.4-foss-2022a', 'vispr/0.4.14-foss-2022a', 'wandb/0.13.4-GCCcore-11.3.0', 'wandb/0.16.1-GCC-12.3.0', 'wget/1.21.1-GCCcore-10.3.0', 'wget/1.21.3-GCCcore-11.3.0', 'wpebackend-fdo/1.13.1-GCCcore-11.2.0', 'wrapt/1.15.0-gfbf-2022b', 'wrapt/1.15.0-gfbf-2023a', 'wtdbg2/2.5-GCCcore-9.3.0', 'wxPython/4.2.0-foss-2021b', 'wxWidgets/3.0.4-GCC-8.2.0-2.31.1', 'wxWidgets/3.2.0-GCC-11.2.0', 'wxWidgets/3.2.1-GCC-11.3.0', 'wxWidgets/3.2.2.1-GCC-12.2.0', 'wxWidgets/3.2.2.1-GCCcore-12.2.0', 'x264/20190413-GCCcore-8.2.0', 'x264/20190925-GCCcore-8.3.0', 'x264/20191217-GCCcore-9.3.0', 'x264/20201026-GCCcore-10.2.0', 'x264/20210414-GCCcore-10.3.0', 'x264/20210613-GCCcore-11.2.0', 'x264/20220620-GCCcore-11.3.0', 'x264/20230226-GCCcore-12.2.0', 'x264/20230226-GCCcore-12.3.0', 'x264/20231019-GCCcore-13.2.0', 'x265/3.0-GCCcore-8.2.0', 'x265/3.2-GCCcore-8.3.0', 'x265/3.3-GCCcore-10.2.0', 'x265/3.3-GCCcore-9.3.0', 'x265/3.5-GCCcore-10.3.0', 'x265/3.5-GCCcore-11.2.0', 'x265/3.5-GCCcore-11.3.0', 'x265/3.5-GCCcore-12.2.0', 'x265/3.5-GCCcore-12.3.0', 'x265/3.5-GCCcore-13.2.0', 'xarray/0.15.1-foss-2019b-Python-3.7.4', 'xarray/0.19.0-foss-2021a', 'xarray/2022.6.0-foss-2022a', 'xarray/2023.9.0-gfbf-2023a', 'xorg-macros/1.19.1-GCCcore-6.4.0', 'xorg-macros/1.19.2-GCCcore-10.2.0', 'xorg-macros/1.19.2-GCCcore-7.3.0', 'xorg-macros/1.19.2-GCCcore-8.2.0', 'xorg-macros/1.19.2-GCCcore-8.3.0', 'xorg-macros/1.19.2-GCCcore-9.2.0', 'xorg-macros/1.19.2-GCCcore-9.3.0', 'xorg-macros/1.19.3-GCCcore-10.3.0', 'xorg-macros/1.19.3-GCCcore-11.2.0', 'xorg-macros/1.19.3-GCCcore-11.3.0', 'xorg-macros/1.19.3-GCCcore-12.2.0', 'xorg-macros/1.20.0-GCCcore-12.3.0', 'xorg-macros/1.20.0-GCCcore-13.2.0', 'xprop/1.2.2-GCCcore-6.4.0-X11-20180131', 'xprop/1.2.4-GCCcore-8.2.0', 'xprop/1.2.5-GCCcore-10.2.0', 'xtb/6.6.1-gfbf-2022b', 'xtb/6.6.1-gfbf-2023a', 'xxHash/0.8.0-GCCcore-11.2.0', 'xxHash/0.8.1-GCCcore-11.3.0', 'yaff/1.6.0-foss-2020a-Python-3.8.2', 'yaml-cpp/0.7.0-GCCcore-11.3.0', 'yaml-cpp/0.7.0-GCCcore-12.2.0', 'yaml-cpp/0.7.0-GCCcore-12.3.0', 'yaml-cpp/0.8.0-GCCcore-13.2.0', 'zUMIs/2.9.7-foss-2023a-R-4.3.2', 'zarr/2.10.1-foss-2021a', 'zarr/2.17.1-foss-2023a', 'zfp/1.0.0-GCCcore-10.3.0', 'zfp/1.0.0-GCCcore-11.3.0', 'zfp/1.0.1-GCCcore-12.3.0', 'zlib-ng/2.0.6-GCCcore-10.3.0', 'zlib-ng/2.0.7-GCCcore-11.3.0', 'zlib-ng/2.1.6-GCCcore-12.3.0', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-10.1.0', 'zlib/1.2.11-GCCcore-10.2.0', 'zlib/1.2.11-GCCcore-10.3.0', 'zlib/1.2.11-GCCcore-11.2.0', 'zlib/1.2.11-GCCcore-6.4.0', 'zlib/1.2.11-GCCcore-7.3.0', 'zlib/1.2.11-GCCcore-8.2.0', 'zlib/1.2.11-GCCcore-8.3.0', 'zlib/1.2.11-GCCcore-8.4.0', 'zlib/1.2.11-GCCcore-9.2.0', 'zlib/1.2.11-GCCcore-9.3.0', 'zlib/1.2.12', 'zlib/1.2.12-GCCcore-11.3.0', 'zlib/1.2.12-GCCcore-12.1.0', 'zlib/1.2.12-GCCcore-12.2.0', 'zlib/1.2.13', 'zlib/1.2.13-GCCcore-12.3.0', 'zlib/1.2.13-GCCcore-13.2.0', 'zstd/1.4.0-GCCcore-8.2.0', 'zstd/1.4.4-GCCcore-9.3.0', 'zstd/1.4.5-GCCcore-10.2.0', 'zstd/1.4.9-GCCcore-10.3.0', 'zstd/1.5.0-GCCcore-11.2.0', 'zstd/1.5.2-GCCcore-11.3.0', 'zstd/1.5.2-GCCcore-12.2.0', 'zstd/1.5.5-GCCcore-12.3.0', 'zstd/1.5.5-GCCcore-13.2.0'] | |
== 2024-06-26 11:40:48,587 modules.py:628 INFO Checking whether pkgconf/2.0.3-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,587 modules.py:633 INFO Module pkgconf/2.0.3-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,587 modules.py:656 INFO Result for existence check of pkgconf/2.0.3-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:48,587 modules.py:628 INFO Checking whether Xvfb/21.1.9-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,587 modules.py:633 INFO Module Xvfb/21.1.9-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,587 modules.py:656 INFO Result for existence check of Xvfb/21.1.9-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:48,587 modules.py:628 INFO Checking whether Autotools/20220317-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,588 modules.py:633 INFO Module Autotools/20220317-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,588 modules.py:656 INFO Result for existence check of Autotools/20220317-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:48,588 modules.py:628 INFO Checking whether CMake/3.27.6-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,588 modules.py:633 INFO Module CMake/3.27.6-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,588 modules.py:656 INFO Result for existence check of CMake/3.27.6-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:48,588 modules.py:628 INFO Checking whether R/4.4.1-gfbf-2023b exists... | |
== 2024-06-26 11:40:48,588 modules.py:633 INFO Module R/4.4.1-gfbf-2023b exists (found in list of available modules) | |
== 2024-06-26 11:40:48,588 modules.py:656 INFO Result for existence check of R/4.4.1-gfbf-2023b module: True | |
== 2024-06-26 11:40:48,588 modules.py:628 INFO Checking whether libxml2/2.11.5-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,588 modules.py:633 INFO Module libxml2/2.11.5-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,588 modules.py:656 INFO Result for existence check of libxml2/2.11.5-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:48,588 modules.py:628 INFO Checking whether GMP/6.3.0-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,588 modules.py:633 INFO Module GMP/6.3.0-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,588 modules.py:656 INFO Result for existence check of GMP/6.3.0-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:48,588 modules.py:628 INFO Checking whether NLopt/2.7.1-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,588 modules.py:633 INFO Module NLopt/2.7.1-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,589 modules.py:656 INFO Result for existence check of NLopt/2.7.1-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:48,589 modules.py:628 INFO Checking whether FFTW/3.3.10-GCC-13.2.0 exists... | |
== 2024-06-26 11:40:48,589 modules.py:633 INFO Module FFTW/3.3.10-GCC-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:48,589 modules.py:656 INFO Result for existence check of FFTW/3.3.10-GCC-13.2.0 module: True | |
== 2024-06-26 11:40:48,589 modules.py:628 INFO Checking whether libsndfile/1.2.2-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:48,589 modules.py:636 INFO Module libsndfile/1.2.2-GCCcore-13.2.0 not found in list of available modules, checking via 'module show'... | |
== 2024-06-26 11:40:48,589 modules.py:572 DEBUG Checking whether libsndfile/1.2.2-GCCcore-13.2.0 exists based on output of 'module show' | |
== 2024-06-26 11:40:48,589 modules.py:814 DEBUG Current MODULEPATH: /eb/maint/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2024-06-26 11:40:48,589 modules.py:828 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show libsndfile/1.2.2-GCCcore-13.2.0' from /home/software/src/github/easybuild-easyconfigs | |
== 2024-06-26 11:40:49,004 modules.py:835 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show libsndfile/1.2.2-GCCcore-13.2.0': stdout: import os | |
os.environ["MODULEPATH"] = "/eb/maint/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IDcyMDAsCmNfc2hvcnRUaW1lID0gMC4wMDE1NDI4MDY2MjUzNjYyLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0gewpFYXN5QnVpbGQgPSB7CmZuID0gIi9lYi9tYWludC9tb2R1bGVzL2FsbC9FYXN5QnVpbGQvNC45LjIubHVhIiwKZnVsbE5hbWUgPSAiRWFzeUJ1aWxkLzQuOS4yIiwKbG9hZE9yZGVyID0gMSwKcHJvcFQgPSB7fSwKc3RhY2tEZXB0aCA9IDAsCnN0YXR1cyA9ICJhY3RpdmUiLAp1c2VyTmFtZSA9ICJFYXN5QnVpbGQvNC45LjIiLAp3ViA9ICIwMDAwMDAwMDQuMDAwMDAwMDA5LjAwMDAwMDAwMi4qemZpbmFsIiwKfSwKfSwKbXBhdGhBID0gewoiL2ViL21haW50L21v"; | |
os.environ["_ModuleTable002_"] = "ZHVsZXMvYWxsIiwgIi9ldGMvbW9kdWxlZmlsZXMiLCAiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcyIsICIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwgIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsICIvdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIiwKfSwKc3lzdGVtQmFzZU1QQVRIID0gIi9ldGMvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlczovZWIvbWFpbnQvbW9kdWxlcy9hbGw6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: | |
== 2024-06-26 11:40:49,005 modules.py:723 DEBUG Cached result for 'module show libsndfile/1.2.2-GCCcore-13.2.0' with key '('MODULEPATH=/eb/maint/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'libsndfile/1.2.2-GCCcore-13.2.0')': | |
== 2024-06-26 11:40:49,011 modules.py:582 DEBUG Checking line '' to determine whether libsndfile/1.2.2-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,011 modules.py:586 DEBUG Treating line '' as whitespace, so skipping it | |
== 2024-06-26 11:40:49,012 modules.py:649 INFO Module libsndfile/1.2.2-GCCcore-13.2.0 not found via module avail/show, checking whether it is a wrapper | |
== 2024-06-26 11:40:49,013 modules.py:656 INFO Result for existence check of libsndfile/1.2.2-GCCcore-13.2.0 module: False | |
== 2024-06-26 11:40:49,013 modules.py:628 INFO Checking whether ICU/74.1-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,013 modules.py:633 INFO Module ICU/74.1-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,013 modules.py:656 INFO Result for existence check of ICU/74.1-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:49,014 modules.py:628 INFO Checking whether HDF5/1.14.3-gompi-2023b exists... | |
== 2024-06-26 11:40:49,014 modules.py:633 INFO Module HDF5/1.14.3-gompi-2023b exists (found in list of available modules) | |
== 2024-06-26 11:40:49,014 modules.py:656 INFO Result for existence check of HDF5/1.14.3-gompi-2023b module: True | |
== 2024-06-26 11:40:49,014 modules.py:628 INFO Checking whether UDUNITS/2.2.28-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,014 modules.py:633 INFO Module UDUNITS/2.2.28-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,015 modules.py:656 INFO Result for existence check of UDUNITS/2.2.28-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:49,015 modules.py:628 INFO Checking whether GSL/2.7-GCC-13.2.0 exists... | |
== 2024-06-26 11:40:49,015 modules.py:633 INFO Module GSL/2.7-GCC-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,015 modules.py:656 INFO Result for existence check of GSL/2.7-GCC-13.2.0 module: True | |
== 2024-06-26 11:40:49,015 modules.py:628 INFO Checking whether ImageMagick/7.1.1-34-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,015 modules.py:633 INFO Module ImageMagick/7.1.1-34-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,016 modules.py:656 INFO Result for existence check of ImageMagick/7.1.1-34-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:49,016 modules.py:628 INFO Checking whether GLPK/5.0-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,016 modules.py:633 INFO Module GLPK/5.0-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,016 modules.py:656 INFO Result for existence check of GLPK/5.0-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:49,016 modules.py:628 INFO Checking whether nodejs/20.9.0-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,017 modules.py:633 INFO Module nodejs/20.9.0-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,017 modules.py:656 INFO Result for existence check of nodejs/20.9.0-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:49,017 modules.py:628 INFO Checking whether GDAL/3.9.0-foss-2023b exists... | |
== 2024-06-26 11:40:49,017 modules.py:633 INFO Module GDAL/3.9.0-foss-2023b exists (found in list of available modules) | |
== 2024-06-26 11:40:49,017 modules.py:656 INFO Result for existence check of GDAL/3.9.0-foss-2023b module: True | |
== 2024-06-26 11:40:49,018 modules.py:628 INFO Checking whether MPFR/4.2.1-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,018 modules.py:633 INFO Module MPFR/4.2.1-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,018 modules.py:656 INFO Result for existence check of MPFR/4.2.1-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:49,018 modules.py:628 INFO Checking whether PostgreSQL/16.1-GCCcore-13.2.0 exists... | |
== 2024-06-26 11:40:49,018 modules.py:633 INFO Module PostgreSQL/16.1-GCCcore-13.2.0 exists (found in list of available modules) | |
== 2024-06-26 11:40:49,018 modules.py:656 INFO Result for existence check of PostgreSQL/16.1-GCCcore-13.2.0 module: True | |
== 2024-06-26 11:40:49,024 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): libsndfile/1.2.2-GCCcore-13.2.0 (at easybuild/tools/toolchain/toolchain.py:563 in _check_dependencies) | |
== 2024-06-26 11:40:49,025 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-06-26 11:40:49,029 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /eb/maint/software | |
== 2024-06-26 11:40:49,029 filetools.py:2013 INFO Removing lock /eb/maint/software/.locks/_eb_maint_software_R-bundle-CRAN_2024.06-foss-2023b.lock... | |
== 2024-06-26 11:40:49,030 filetools.py:383 INFO Path /eb/maint/software/.locks/_eb_maint_software_R-bundle-CRAN_2024.06-foss-2023b.lock successfully removed. | |
== 2024-06-26 11:40:49,030 filetools.py:2017 INFO Lock removed: /eb/maint/software/.locks/_eb_maint_software_R-bundle-CRAN_2024.06-foss-2023b.lock | |
== 2024-06-26 11:40:49,030 easyblock.py:4285 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): libsndfile/1.2.2-GCCcore-13.2.0 | |
== 2024-06-26 11:40:49,030 easyblock.py:328 INFO Closing log for application name R-bundle-CRAN version 2024.06 |
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