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victorlin/accession_summary.json

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accession_summary.json
{
"properties": {
"sra": "ERR2756788",
"genome": "cov3ma",
"date": "200607-01:47"
},
"families": [
{
"family": "AMR",
"score": "100",
"pctid": "97",
"aln": "1382",
"glb": "845",
"panlen": "1000",
"cvg": "Ooo.oooOOOOOOoooo..o....O",
"top": "AY874537_3000883",
"topaln": "570",
"toplen": "861",
"topname": "TEM-11,Proteus mirabilis"
},
{
"family": "Coronaviridae",
"score": "84",
"pctid": "88",
"aln": "7137",
"glb": "615",
"panlen": "30000",
"cvg": "o____......o.Oo..........",
"top": "EU769557.1",
"topaln": "315",
"toplen": "13467",
"topname": "Bat coronavirus Trinidad/1FY2BA/2007 nonfunctional nonstructural protein 1b` gene, partial sequence"
},
{
"family": "Adenoviridae",
"score": "64",
"pctid": "86",
"aln": "1311",
"glb": "47",
"panlen": "33501",
"cvg": "___.O........o.......____",
"top": "NC_002702.1",
"topaln": "33",
"toplen": "32621",
"topname": "Porcine adenovirus 5"
},
{
"family": "Parvoviridae",
"score": "16",
"pctid": "87",
"aln": "51",
"glb": "11",
"panlen": "5075",
"cvg": "_____..___.._.oO.._______",
"top": "NC_002077.1",
"topaln": "26",
"toplen": "4718",
"topname": "Adeno-associated virus - 1"
},
{
"family": "Herpesviridae",
"score": "12",
"pctid": "98",
"aln": "90",
"glb": "0",
"panlen": "148687",
"cvg": "____________O___.__.____o",
"top": "NC_034446.1",
"topaln": "65",
"toplen": "147346",
"topname": "Ateline alphaherpesvirus 1 isolate Lennette"
},
{
"family": "Alloherpesviridae",
"score": "4",
"pctid": "88",
"aln": "11",
"glb": "0",
"panlen": "207914",
"cvg": "___._O___________________",
"top": "NC_019491.1",
"topaln": "10",
"toplen": "291144",
"topname": "Cyprinid herpesvirus 1 strain NG-J1"
},
{
"family": "Poxviridae",
"score": "4",
"pctid": "85",
"aln": "26",
"glb": "2",
"panlen": "181133",
"cvg": "_O.._..____._____________",
"top": "NC_027213.1",
"topaln": "1",
"toplen": "214699",
"topname": "Raccoonpox virus"
},
{
"family": "Flaviviridae",
"score": "4",
"pctid": "91",
"aln": "10",
"glb": "5",
"panlen": "10290",
"cvg": "o_oO_____o_______________",
"top": "NC_034222.1",
"topaln": "4",
"toplen": "2963",
"topname": "Mogiana tick virus isolate MGTV/V4/11 segment 1"
},
{
"family": "Unknown",
"score": "0",
"pctid": "91",
"aln": "1",
"glb": "0",
"panlen": "4668",
"cvg": "________________________.",
"top": "NC_040681.1",
"topaln": "1",
"toplen": "158250",
"topname": "Bufonid herpesvirus 1 strain FO1_2015"
},
{
"family": "Peribunyaviridae",
"score": "0",
"pctid": "100",
"aln": "2",
"glb": "0",
"panlen": "4420",
"cvg": "________________________o",
"top": "NC_018478.1",
"topaln": "2",
"toplen": "4417",
"topname": "Simbu virus Gn-Gc-NSm gene for M polyprotein"
},
{
"family": "Picornaviridae",
"score": "0",
"pctid": "80",
"aln": "1",
"glb": "0",
"panlen": "7591",
"cvg": ".________________________",
"top": "NC_033818.1",
"topaln": "1",
"toplen": "7092",
"topname": "Kunsagivirus B clone Bat/CAM/KuV-P2/2013 polyprotein gene"
},
{
"family": "Iridoviridae",
"score": "0",
"pctid": "81",
"aln": "1",
"glb": "0",
"panlen": "113436",
"cvg": "_________________._______",
"top": "NC_027778.1",
"topaln": "1",
"toplen": "124244",
"topname": "Scale drop disease virus isolate C4575"
}
],
"accessions": [
{
"acc": "AY874537_3000883",
"pctid": "98.1",
"aln": "570",
"glb": "432",
"len": "861",
"cvgpct": "96",
"depth": "92.2",
"cvg": "Oo.ooOOOoOOOOOOOOOOOO.Oo_",
"fam": "AMR",
"name": "TEM-11,Proteus mirabilis"
},
{
"acc": "AY043299.1_3000167",
"pctid": "99.3",
"aln": "450",
"glb": "258",
"len": "1191",
"cvgpct": "84",
"depth": "49.7",
"cvg": "......OOOoo............._",
"fam": "AMR",
"name": "tet(C),Aeromonas salmonicida"
},
{
"acc": "BA000007.3_3000676",
"pctid": "91.9",
"aln": "100",
"glb": "24",
"len": "414",
"cvgpct": "36",
"depth": "34.1",
"cvg": "O...o........o...._______",
"fam": "AMR",
"name": "H-NS,Escherichia coli O157:H7 str. Sakai"
},
{
"acc": "EU769558.1",
"pctid": "85.3",
"aln": "1694",
"glb": "236",
"len": "14335",
"cvgpct": "28",
"depth": "16.5",
"cvg": "..O....__________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus Trinidad/1CO7BA/2007 nonstructural protein 1b` gene, partial cds"
},
{
"acc": "EU769557.1",
"pctid": "82.1",
"aln": "315",
"glb": "9",
"len": "13467",
"cvgpct": "28",
"depth": "2.87",
"cvg": ".._...O_.O_______________",
"fam": "Coronaviridae",
"name": "Bat coronavirus Trinidad/1FY2BA/2007 nonfunctional nonstructural protein 1b` gene, partial sequence"
},
{
"acc": "NC_003266.2",
"pctid": "82.4",
"aln": "44",
"glb": "1",
"len": "35994",
"cvgpct": "20",
"depth": "0.129",
"cvg": "____o_O_O____.___O_______",
"fam": "Adenoviridae",
"name": "Human adenovirus E"
},
{
"acc": "NC_034382.1",
"pctid": "85.4",
"aln": "49",
"glb": "1",
"len": "35555",
"cvgpct": "20",
"depth": "0.125",
"cvg": "____Oo..____O____________",
"fam": "Adenoviridae",
"name": "Cynomolgus adenovirus 1 isolate UK/UK-1/2004"
},
{
"acc": "D16171_3002689",
"pctid": "97.8",
"aln": "40",
"glb": "20",
"len": "660",
"cvgpct": "20",
"depth": "7.6",
"cvg": "o.._.__O_o_ooo..OOOooo___",
"fam": "AMR",
"name": "plasmid-encoded cat (pp-cat),Photobacterium damselae subsp. piscicida"
},
{
"acc": "HQ728485.1",
"pctid": "85.1",
"aln": "119",
"glb": "4",
"len": "13015",
"cvgpct": "20",
"depth": "0.723",
"cvg": ".o..__..__o_________O____",
"fam": "Coronaviridae",
"name": "Miniopterus bat coronavirus/Kenya/KY33/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds"
},
{
"acc": "NC_032107.1",
"pctid": "81.0",
"aln": "134",
"glb": "2",
"len": "28363",
"cvgpct": "20",
"depth": "0.551",
"cvg": "_________.O__O_oO________",
"fam": "Coronaviridae",
"name": "NL63-related bat coronavirus strain BtKYNL63-9a, complete genome"
},
{
"acc": "NC_028113.1",
"pctid": "83.7",
"aln": "25",
"glb": "0",
"len": "35685",
"cvgpct": "16",
"depth": "0.0626",
"cvg": "____O_____o_O_O__________",
"fam": "Adenoviridae",
"name": "Simian adenovirus 8 strain P-5"
},
{
"acc": "U00096.3_3000216",
"pctid": "94.8",
"aln": "32",
"glb": "23",
"len": "3150",
"cvgpct": "16",
"depth": "1.51",
"cvg": "oo_oOOo_.Oo_________.ooO_",
"fam": "AMR",
"name": "acrB,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "NC_028105.1",
"pctid": "82.8",
"aln": "54",
"glb": "0",
"len": "35159",
"cvgpct": "16",
"depth": "0.158",
"cvg": "____O__.____..oO_________",
"fam": "Adenoviridae",
"name": "Simian adenovirus 16 strain C-8"
},
{
"acc": "MG923571.2",
"pctid": "81.7",
"aln": "170",
"glb": "5",
"len": "14035",
"cvgpct": "16",
"depth": "1.52",
"cvg": "___.._O._________________",
"fam": "Coronaviridae",
"name": "Bat alphacoronavirus isolate BtCoV/606_14/M.dau/FIN/2014 polyprotein gene, partial cds"
},
{
"acc": "NC_016895.2",
"pctid": "86.5",
"aln": "269",
"glb": "12",
"len": "31806",
"cvgpct": "16",
"depth": "0.883",
"cvg": "____O_____.__...__.______",
"fam": "Adenoviridae",
"name": "Bat adenovirus TJM"
},
{
"acc": "AP006618.1_3000501",
"pctid": "85.4",
"aln": "25",
"glb": "5",
"len": "3489",
"cvgpct": "16",
"depth": "0.911",
"cvg": "__._o.ooOO._O____..__O___",
"fam": "AMR",
"name": "Nocardia rifampin resistant beta-subunit of RNA polymerase (rpoB2),Nocardia farcinica IFM 10152"
},
{
"acc": "NC_032105.1",
"pctid": "82.7",
"aln": "63",
"glb": "8",
"len": "33562",
"cvgpct": "16",
"depth": "0.229",
"cvg": "____O._________._._______",
"fam": "Adenoviridae",
"name": "Simian mastadenovirus WIV19"
},
{
"acc": "NC_015225.1",
"pctid": "83.7",
"aln": "33",
"glb": "0",
"len": "35499",
"cvgpct": "12",
"depth": "0.0902",
"cvg": "____O...____o____________",
"fam": "Adenoviridae",
"name": "Simian adenovirus 49"
},
{
"acc": "KY770850.1",
"pctid": "83.2",
"aln": "13",
"glb": "0",
"len": "26883",
"cvgpct": "12",
"depth": "0.0372",
"cvg": "_________O_____oO________",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate Anlong-43, complete genome"
},
{
"acc": "KJ473810.1",
"pctid": "88.8",
"aln": "58",
"glb": "0",
"len": "27576",
"cvgpct": "12",
"depth": "0.154",
"cvg": "_______O_____________Oo__",
"fam": "Coronaviridae",
"name": "BtMs-AlphaCoV/GS2013, complete genome"
},
{
"acc": "U00096.3_3003950",
"pctid": "95.0",
"aln": "12",
"glb": "8",
"len": "1749",
"cvgpct": "12",
"depth": "1",
"cvg": "O_O_________________O_.o_",
"fam": "AMR",
"name": "msbA,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "NC_006144.1",
"pctid": "82.1",
"aln": "32",
"glb": "1",
"len": "34246",
"cvgpct": "12",
"depth": "0.102",
"cvg": "____O________o.__._______",
"fam": "Adenoviridae",
"name": "Simian adenovirus 3"
},
{
"acc": "NC_015932.1",
"pctid": "81.8",
"aln": "57",
"glb": "0",
"len": "31616",
"cvgpct": "12",
"depth": "0.206",
"cvg": "____O_________Oo_________",
"fam": "Adenoviridae",
"name": "Bat adenovirus 2"
},
{
"acc": "KY073746.1",
"pctid": "89.2",
"aln": "128",
"glb": "0",
"len": "28442",
"cvgpct": "12",
"depth": "0.279",
"cvg": ".______.___.___________O_",
"fam": "Coronaviridae",
"name": "NL63-related bat coronavirus strain BtKYNL63-15, complete genome"
},
{
"acc": "MK472070.1",
"pctid": "92.4",
"aln": "53",
"glb": "0",
"len": "28009",
"cvgpct": "12",
"depth": "0.104",
"cvg": "______.____.___.________O",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. isolate WA3607, complete genome"
},
{
"acc": "NC_012959.1",
"pctid": "85.7",
"aln": "20",
"glb": "0",
"len": "34920",
"cvgpct": "12",
"depth": "0.0431",
"cvg": "____o_OO_________________",
"fam": "Adenoviridae",
"name": "Human adenovirus 54"
},
{
"acc": "NC_002513.1",
"pctid": "83.1",
"aln": "32",
"glb": "1",
"len": "33034",
"cvgpct": "12",
"depth": "0.108",
"cvg": "____.________O.__________",
"fam": "Adenoviridae",
"name": "Bovine adenovirus type 2"
},
{
"acc": "KY770851.1",
"pctid": "80.9",
"aln": "119",
"glb": "0",
"len": "28096",
"cvgpct": "12",
"depth": "0.459",
"cvg": "___________...o.OO_______",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate Anlong-57, complete genome"
},
{
"acc": "KY073748.1",
"pctid": "85.3",
"aln": "13",
"glb": "0",
"len": "27636",
"cvgpct": "8",
"depth": "0.0467",
"cvg": "_________________OO______",
"fam": "Coronaviridae",
"name": "229E-related bat coronavirus strain BtKY229E-8, complete genome"
},
{
"acc": "MH687939.1",
"pctid": "85.3",
"aln": "7",
"glb": "0",
"len": "28307",
"cvgpct": "8",
"depth": "0.0185",
"cvg": "___________O___O_________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_39_c2, complete genome"
},
{
"acc": "MH687957.1",
"pctid": "89.0",
"aln": "13",
"glb": "0",
"len": "28173",
"cvgpct": "8",
"depth": "0.037",
"cvg": "_________.o._____O_______",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16845_64, complete genome"
},
{
"acc": "HQ728481.1",
"pctid": "84.7",
"aln": "18",
"glb": "0",
"len": "11902",
"cvgpct": "8",
"depth": "0.113",
"cvg": "O______.O________________",
"fam": "Coronaviridae",
"name": "Chaerephon bat coronavirus/Kenya/KY41/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds"
},
{
"acc": "NC_029899.1",
"pctid": "85.0",
"aln": "17",
"glb": "1",
"len": "37556",
"cvgpct": "8",
"depth": "0.0419",
"cvg": "____O_______O____________",
"fam": "Adenoviridae",
"name": "Bat mastadenovirus WIV10"
},
{
"acc": "NC_029898.1",
"pctid": "85.8",
"aln": "15",
"glb": "0",
"len": "37545",
"cvgpct": "8",
"depth": "0.0366",
"cvg": "____O________o___________",
"fam": "Adenoviridae",
"name": "Bat mastadenovirus WIV9"
},
{
"acc": "HQ012368.1",
"pctid": "81.0",
"aln": "22",
"glb": "0",
"len": "29252",
"cvgpct": "8",
"depth": "0.0711",
"cvg": "__________o__O___________",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU18, complete genome"
},
{
"acc": "NC_008618.1_3004480",
"pctid": "84.6",
"aln": "14",
"glb": "0",
"len": "3561",
"cvgpct": "8",
"depth": "0.493",
"cvg": "_________..____.O_O__..__",
"fam": "AMR",
"name": "Bifidobacterium adolescentis rpoB conferring resistance to rifampicin,Bifidobacterium adolescentis"
},
{
"acc": "NC_034626.1",
"pctid": "82.9",
"aln": "6",
"glb": "1",
"len": "29923",
"cvgpct": "8",
"depth": "0.0208",
"cvg": "______________OO_________",
"fam": "Adenoviridae",
"name": "Bat mastadenovirus WIV17"
},
{
"acc": "NC_044936.1",
"pctid": "83.9",
"aln": "7",
"glb": "0",
"len": "33501",
"cvgpct": "8",
"depth": "0.0212",
"cvg": "______O_______O__________",
"fam": "Adenoviridae",
"name": "Tree shrew adenovirus 1"
},
{
"acc": "JN634064.1",
"pctid": "84.5",
"aln": "34",
"glb": "0",
"len": "28984",
"cvgpct": "8",
"depth": "0.108",
"cvg": "______________O_.________",
"fam": "Coronaviridae",
"name": "Feline coronavirus strain WSU 79-1683, complete genome"
},
{
"acc": "NC_001454.1",
"pctid": "82.8",
"aln": "18",
"glb": "5",
"len": "34214",
"cvgpct": "8",
"depth": "0.0576",
"cvg": "____o_________O__________",
"fam": "Adenoviridae",
"name": "Human adenovirus F"
},
{
"acc": "MF094686.1",
"pctid": "92.2",
"aln": "31",
"glb": "0",
"len": "27198",
"cvgpct": "8",
"depth": "0.0631",
"cvg": "________.__O___________._",
"fam": "Coronaviridae",
"name": "Swine acute diarrhea syndrome related coronavirus isolate 8495, complete genome"
},
{
"acc": "MK211371.1",
"pctid": "88.9",
"aln": "19",
"glb": "0",
"len": "28146",
"cvgpct": "8",
"depth": "0.0387",
"cvg": "_______O___._____________",
"fam": "Coronaviridae",
"name": "Coronavirus BtSk-AlphaCoV/GX2018C, complete genome"
},
{
"acc": "EU186072.1",
"pctid": "85.7",
"aln": "24",
"glb": "0",
"len": "29256",
"cvgpct": "8",
"depth": "0.0652",
"cvg": "__________O___O__________",
"fam": "Coronaviridae",
"name": "Feline coronavirus isolate Black, complete genome"
},
{
"acc": "NC_011202.1",
"pctid": "81.7",
"aln": "19",
"glb": "0",
"len": "34794",
"cvgpct": "8",
"depth": "0.0535",
"cvg": "____O________O___________",
"fam": "Adenoviridae",
"name": "Human adenovirus B2"
},
{
"acc": "NC_021168.1",
"pctid": "83.0",
"aln": "13",
"glb": "0",
"len": "34391",
"cvgpct": "8",
"depth": "0.0427",
"cvg": "__________O___O__________",
"fam": "Adenoviridae",
"name": "Simian adenovirus C isolate BaAdV-2"
},
{
"acc": "NC_031948.1",
"pctid": "84.4",
"aln": "29",
"glb": "0",
"len": "31481",
"cvgpct": "8",
"depth": "0.0918",
"cvg": "______________O___o______",
"fam": "Adenoviridae",
"name": "Bat mastadenovirus G isolate 250-A"
},
{
"acc": "MK720944.1",
"pctid": "82.7",
"aln": "13",
"glb": "2",
"len": "27636",
"cvgpct": "8",
"depth": "0.0509",
"cvg": "________.__O_____o______o",
"fam": "Coronaviridae",
"name": "Tylonycteris bat coronavirus HKU33 strain GZ151867, complete genome"
},
{
"acc": "MK472068.1",
"pctid": "86.2",
"aln": "13",
"glb": "1",
"len": "27435",
"cvgpct": "8",
"depth": "0.048",
"cvg": ".__________O_____O_______",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. isolate WA2028, complete genome"
},
{
"acc": "NC_001734.1",
"pctid": "82.4",
"aln": "16",
"glb": "0",
"len": "30536",
"cvgpct": "8",
"depth": "0.0561",
"cvg": "________.____O__o________",
"fam": "Adenoviridae",
"name": "Canine adenovirus"
},
{
"acc": "NC_000942.1",
"pctid": "84.9",
"aln": "8",
"glb": "0",
"len": "30944",
"cvgpct": "8",
"depth": "0.021",
"cvg": "______________OO_________",
"fam": "Adenoviridae",
"name": "Murine adenovirus A"
},
{
"acc": "NC_030792.1",
"pctid": "83.9",
"aln": "66",
"glb": "1",
"len": "32690",
"cvgpct": "8",
"depth": "0.241",
"cvg": "____O_________O._________",
"fam": "Adenoviridae",
"name": "Equine adenovirus 1 strain M1"
},
{
"acc": "NC_001876.1",
"pctid": "89.7",
"aln": "59",
"glb": "0",
"len": "34446",
"cvgpct": "8",
"depth": "0.091",
"cvg": "____O____________._______",
"fam": "Adenoviridae",
"name": "Bovine adenovirus 3 complete genome"
},
{
"acc": "KF294377.1",
"pctid": "84.5",
"aln": "13",
"glb": "0",
"len": "6556",
"cvgpct": "8",
"depth": "0.168",
"cvg": "_______________________oO",
"fam": "Coronaviridae",
"name": "Lushi Ml bat coronavirus isolate Neixiang-14 orf1ab polyprotein gene, partial cds"
},
{
"acc": "NC_029902.1",
"pctid": "85.0",
"aln": "113",
"glb": "7",
"len": "38073",
"cvgpct": "8",
"depth": "0.287",
"cvg": "____O____.___O___________",
"fam": "Adenoviridae",
"name": "Bat mastadenovirus WIV11"
},
{
"acc": "HQ728486.1",
"pctid": "94.0",
"aln": "158",
"glb": "0",
"len": "12499",
"cvgpct": "8",
"depth": "0.739",
"cvg": "__________._____________O",
"fam": "Coronaviridae",
"name": "Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds"
},
{
"acc": "JX537911.1",
"pctid": "85.3",
"aln": "101",
"glb": "0",
"len": "15186",
"cvgpct": "8",
"depth": "0.481",
"cvg": "_O.______________________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus Eptesicus fuscus strain NeCoV isolate Ffrag_SAGA_bigbrown_2010 replicase gene, partial cds"
},
{
"acc": "NC_002077.1",
"pctid": "87.6",
"aln": "26",
"glb": "10",
"len": "4718",
"cvgpct": "8",
"depth": "0.743",
"cvg": "_______________.O________",
"fam": "Parvoviridae",
"name": "Adeno-associated virus - 1"
},
{
"acc": "HM245926.1",
"pctid": "85.0",
"aln": "20",
"glb": "0",
"len": "28915",
"cvgpct": "8",
"depth": "0.0527",
"cvg": "_________._____O_________",
"fam": "Coronaviridae",
"name": "Mink coronavirus strain WD1133, complete genome"
},
{
"acc": "NC_010956.1",
"pctid": "86.1",
"aln": "15",
"glb": "0",
"len": "35083",
"cvgpct": "8",
"depth": "0.029",
"cvg": "____o__O_________._______",
"fam": "Adenoviridae",
"name": "Human adenovirus D"
},
{
"acc": "MH687950.1",
"pctid": "85.0",
"aln": "76",
"glb": "0",
"len": "28155",
"cvgpct": "8",
"depth": "0.2",
"cvg": "___________._________O___",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_77, complete genome"
},
{
"acc": "MK330604.1",
"pctid": "86.6",
"aln": "59",
"glb": "0",
"len": "25402",
"cvgpct": "8",
"depth": "0.136",
"cvg": "____________________OO___",
"fam": "Coronaviridae",
"name": "Porcine deltacoronavirus strain CHN/Sichuan/2017, complete genome"
},
{
"acc": "KY073747.1",
"pctid": "96.8",
"aln": "183",
"glb": "0",
"len": "27837",
"cvgpct": "8",
"depth": "0.259",
"cvg": "._______________.______O_",
"fam": "Coronaviridae",
"name": "229E-related bat coronavirus strain BtKY229E-1, complete genome"
},
{
"acc": "MN611518.1",
"pctid": "87.7",
"aln": "74",
"glb": "0",
"len": "28751",
"cvgpct": "8",
"depth": "0.18",
"cvg": "________.__O_..__________",
"fam": "Coronaviridae",
"name": "Miniopterus pusillus bat coronavirus HKU8-related isolate 6610, complete genome"
},
{
"acc": "JQ989273.1",
"pctid": "83.3",
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"glb": "1",
"len": "28483",
"cvgpct": "8",
"depth": "0.109",
"cvg": "_______.______O.____.____",
"fam": "Coronaviridae",
"name": "Hipposideros bat coronavirus HKU10 isolate TLC1347A, complete genome"
},
{
"acc": "KY799179.1",
"pctid": "81.5",
"aln": "14",
"glb": "2",
"len": "28173",
"cvgpct": "8",
"depth": "0.0422",
"cvg": "_________.____O_Oo_______",
"fam": "Coronaviridae",
"name": "Myotis lucifugus coronavirus, complete genome"
},
{
"acc": "MH938449.1",
"pctid": "99.4",
"aln": "740",
"glb": "0",
"len": "28128",
"cvgpct": "8",
"depth": "0.95",
"cvg": "O________._______________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015, complete genome"
},
{
"acc": "MK211369.1",
"pctid": "92.7",
"aln": "3",
"glb": "0",
"len": "28303",
"cvgpct": "4",
"depth": "0.00583",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Coronavirus BtSk-AlphaCoV/GX2018A, complete genome"
},
{
"acc": "KT253272.1",
"pctid": "85.5",
"aln": "6",
"glb": "0",
"len": "1",
"cvgpct": "4",
"depth": "373",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "229E-related bat coronavirus isolate BtCoV/AT1A-F1/Hip_aba/GHA/2010 orf1ab, orf1a, spike glycoprotein, orf4, E, M, N, and orf8 genes, complete cds"
},
{
"acc": "KY010665.1",
"pctid": "85.0",
"aln": "3",
"glb": "0",
"len": "14870",
"cvgpct": "4",
"depth": "0.013",
"cvg": "_O_______________________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. isolate Kch1-04_Myhs RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "KX512810.1",
"pctid": "81.6",
"aln": "3",
"glb": "0",
"len": "27987",
"cvgpct": "4",
"depth": "0.00836",
"cvg": "_________________O_______",
"fam": "Coronaviridae",
"name": "Ferret systemic coronavirus strain FSCV6, complete genome"
},
{
"acc": "KU215420.1",
"pctid": "83.6",
"aln": "3",
"glb": "0",
"len": "29262",
"cvgpct": "4",
"depth": "0.00748",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus isolate Cat1_day7, complete genome"
},
{
"acc": "MH687949.1",
"pctid": "85.0",
"aln": "5",
"glb": "0",
"len": "28185",
"cvgpct": "4",
"depth": "0.0144",
"cvg": "________o__O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_76, complete genome"
},
{
"acc": "KF530125.1",
"pctid": "82.3",
"aln": "3",
"glb": "0",
"len": "298",
"cvgpct": "4",
"depth": "0.815",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Feline coronavirus strain Felis catus/NLD/UU67/2010 genomic sequence"
},
{
"acc": "NC_027705.1",
"pctid": "88.1",
"aln": "4",
"glb": "0",
"len": "33090",
"cvgpct": "4",
"depth": "0.00762",
"cvg": "___________________O_____",
"fam": "Adenoviridae",
"name": "Equine adenovirus 2 isolate EAdV2.385/75.9"
},
{
"acc": "MG428705.1",
"pctid": "93.5",
"aln": "5",
"glb": "0",
"len": "27587",
"cvgpct": "4",
"depth": "0.00725",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Human coronavirus NL63 isolate Kilifi_HH_0522_21-May-2010, complete genome"
},
{
"acc": "MH687945.1",
"pctid": "88.0",
"aln": "9",
"glb": "0",
"len": "28235",
"cvgpct": "4",
"depth": "0.0243",
"cvg": "_________o_O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_56, complete genome"
},
{
"acc": "NC_038333.1",
"pctid": "83.1",
"aln": "10",
"glb": "0",
"len": "29474",
"cvgpct": "4",
"depth": "0.0248",
"cvg": "___.O____________________",
"fam": "Adenoviridae",
"name": "Bottlenose dolphin adenovirus 1 strain Tt11018"
},
{
"acc": "MK334045.1",
"pctid": "93.7",
"aln": "4",
"glb": "0",
"len": "27544",
"cvgpct": "4",
"depth": "0.00574",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Human coronavirus NL63 strain ChinaGD05, complete genome"
},
{
"acc": "KX722529.1",
"pctid": "77.2",
"aln": "3",
"glb": "0",
"len": "29174",
"cvgpct": "4",
"depth": "0.0132",
"cvg": "______________O__________",
"fam": "Coronaviridae",
"name": "Feline coronavirus isolate UG-FH8, complete genome"
},
{
"acc": "MG428700.1",
"pctid": "80.1",
"aln": "3",
"glb": "0",
"len": "1",
"cvgpct": "4",
"depth": "316",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Human coronavirus NL63 isolate Kilifi_HH_1602_01-Jun-2010, partial genome"
},
{
"acc": "MH002340.1",
"pctid": "86.7",
"aln": "4",
"glb": "0",
"len": "30494",
"cvgpct": "4",
"depth": "0.00787",
"cvg": "_______________O_________",
"fam": "Coronaviridae",
"name": "Pipistrellus bat coronavirus HKU5 isolate BY140535, complete genome"
},
{
"acc": "MN165107.1",
"pctid": "81.4",
"aln": "3",
"glb": "0",
"len": "29286",
"cvgpct": "4",
"depth": "0.00936",
"cvg": "______________O__________",
"fam": "Coronaviridae",
"name": "Feline coronavirus isolate XXN, complete genome"
},
{
"acc": "MH891585.1",
"pctid": "82.5",
"aln": "4",
"glb": "0",
"len": "28027",
"cvgpct": "4",
"depth": "0.0132",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate S14, complete genome"
},
{
"acc": "KF294282.1",
"pctid": "90.2",
"aln": "4",
"glb": "0",
"len": "12891",
"cvgpct": "4",
"depth": "0.0166",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate Neixiang-64 RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "MH687966.1",
"pctid": "93.8",
"aln": "3",
"glb": "0",
"len": "28389",
"cvgpct": "4",
"depth": "0.0062",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_20745_6, complete genome"
},
{
"acc": "MH938448.1",
"pctid": "80.6",
"aln": "5",
"glb": "1",
"len": "27862",
"cvgpct": "4",
"depth": "0.0198",
"cvg": "_____o_____O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206645-41/2011, complete genome"
},
{
"acc": "KX883635.1",
"pctid": "89.3",
"aln": "4",
"glb": "0",
"len": "1",
"cvgpct": "4",
"depth": "244",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain WHZHC72223 ORF1ab, S protein, ORF3 protein, envelope protein, M protein, and nucleoprotein genes, complete cds"
},
{
"acc": "NC_001829.1",
"pctid": "88.0",
"aln": "4",
"glb": "0",
"len": "4767",
"cvgpct": "4",
"depth": "0.0558",
"cvg": "__________________O______",
"fam": "Parvoviridae",
"name": "Adeno-associated virus - 4"
},
{
"acc": "MN611523.1",
"pctid": "78.2",
"aln": "4",
"glb": "0",
"len": "28514",
"cvgpct": "4",
"depth": "0.0191",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Hipposideros pomona bat coronavirus HKU10-related isolate 160942, complete genome"
},
{
"acc": "EU856361.1",
"pctid": "84.7",
"aln": "4",
"glb": "0",
"len": "7645",
"cvgpct": "4",
"depth": "0.0419",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Canine coronavirus strain 341/05 polyprotein 1ab and polyprotein 1a genes, partial cds; and S protein, nsp 3a, nsp 3b, nsp 3c, E protein, M protein, N protein, nsp 7a, and nsp 7b genes, complete cds"
},
{
"acc": "NC_010438.1",
"pctid": "83.1",
"aln": "5",
"glb": "0",
"len": "28773",
"cvgpct": "4",
"depth": "0.0144",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Bat coronavirus HKU8, complete genome"
},
{
"acc": "U00096.3_3000516",
"pctid": "89.2",
"aln": "8",
"glb": "1",
"len": "531",
"cvgpct": "4",
"depth": "2.15",
"cvg": "_..o_._______O___________",
"fam": "AMR",
"name": "emrR,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "MF577027.1",
"pctid": "79.6",
"aln": "5",
"glb": "0",
"len": "28315",
"cvgpct": "4",
"depth": "0.0222",
"cvg": "__________o___O__________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain PEDV/Belgorod/dom/2008, complete genome"
},
{
"acc": "GU338457.1",
"pctid": "90.7",
"aln": "3",
"glb": "0",
"len": "19552",
"cvgpct": "4",
"depth": "0.0066",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Ferret enteric coronavirus strain MSU-2 polymerase 1b gene, partial cds; and spike glycoprotein (S), 3c-like non-structural protein, envelope glycoprotein (E), membrane glycoprotein (M), nucleocapsid (N), hypothetical protein, and nsp 7b glycoprotein genes, complete cds"
},
{
"acc": "NC_005831.2",
"pctid": "92.2",
"aln": "7",
"glb": "0",
"len": "27553",
"cvgpct": "4",
"depth": "0.0107",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Human Coronavirus NL63, complete genome"
},
{
"acc": "KF294379.1",
"pctid": "94.4",
"aln": "7",
"glb": "0",
"len": "7097",
"cvgpct": "4",
"depth": "0.0403",
"cvg": "___________________O_____",
"fam": "Coronaviridae",
"name": "Lucheng Rn rat coronavirus isolate Longquan-311 orf1ab polyprotein gene, partial cds"
},
{
"acc": "MN611517.1",
"pctid": "84.8",
"aln": "14",
"glb": "0",
"len": "27619",
"cvgpct": "4",
"depth": "0.0453",
"cvg": ".________._.______O______",
"fam": "Coronaviridae",
"name": "Rousettus aegyptiacus bat coronavirus 229E-related isolate 5425, complete genome"
},
{
"acc": "MN611524.1",
"pctid": "86.0",
"aln": "6",
"glb": "0",
"len": "28316",
"cvgpct": "4",
"depth": "0.0162",
"cvg": "__________________O______",
"fam": "Coronaviridae",
"name": "Miniopterus schreibersii bat coronavirus 1-related isolate 161454, complete genome"
},
{
"acc": "KY370050.1",
"pctid": "91.1",
"aln": "7",
"glb": "0",
"len": "38",
"cvgpct": "4",
"depth": "9.16",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Rodent coronavirus isolate RtRl-CoV/FJ2015 ORF1ab polyprotein, spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds"
},
{
"acc": "MH687964.1",
"pctid": "94.1",
"aln": "5",
"glb": "0",
"len": "28210",
"cvgpct": "4",
"depth": "0.00904",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_20745_10, complete genome"
},
{
"acc": "MK472067.1",
"pctid": "81.3",
"aln": "12",
"glb": "0",
"len": "28170",
"cvgpct": "4",
"depth": "0.0544",
"cvg": "______________O__._______",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. isolate WA1087, complete genome"
},
{
"acc": "KT253271.1",
"pctid": "82.3",
"aln": "14",
"glb": "0",
"len": "12",
"cvgpct": "4",
"depth": "85.8",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "229E-related bat coronavirus isolate BtCoV/KW2E-F56/Hip_cf._rub/GHA/2011 orf1ab, orf1a, spike glycoprotein, orf4, E, M, N, and orf8 genes, complete cds"
},
{
"acc": "KU836638.1",
"pctid": "81.7",
"aln": "12",
"glb": "0",
"len": "297",
"cvgpct": "4",
"depth": "4.79",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate Yorkshire-2000, partial genome"
},
{
"acc": "NC_035207.1",
"pctid": "80.3",
"aln": "10",
"glb": "1",
"len": "35030",
"cvgpct": "4",
"depth": "0.033",
"cvg": "____________O____________",
"fam": "Adenoviridae",
"name": "Squirrel adenovirus 1 strain DE/2013/Sciurus vulgaris/2013Pa405-00252"
},
{
"acc": "NC_038539.1",
"pctid": "93.9",
"aln": "3",
"glb": "0",
"len": "4395",
"cvgpct": "4",
"depth": "0.03",
"cvg": "_________________O_______",
"fam": "Parvoviridae",
"name": "California sea lion adeno-associated virus 1 isolate 1187 Rep78 and VP1 genes"
},
{
"acc": "NC_006879.1",
"pctid": "85.9",
"aln": "7",
"glb": "0",
"len": "34450",
"cvgpct": "4",
"depth": "0.0157",
"cvg": "_____._O_________________",
"fam": "Adenoviridae",
"name": "Simian adenovirus 1"
},
{
"acc": "MH891590.1",
"pctid": "81.6",
"aln": "4",
"glb": "0",
"len": "28024",
"cvgpct": "4",
"depth": "0.0132",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate S10, complete genome"
},
{
"acc": "NC_032730.1",
"pctid": "91.1",
"aln": "8",
"glb": "0",
"len": "28763",
"cvgpct": "4",
"depth": "0.0137",
"cvg": "__________O______o_______",
"fam": "Coronaviridae",
"name": "Lucheng Rn rat coronavirus isolate Lucheng-19, complete genome"
},
{
"acc": "NC_024150.1",
"pctid": "82.1",
"aln": "8",
"glb": "0",
"len": "31709",
"cvgpct": "4",
"depth": "0.029",
"cvg": "_____________o_O_________",
"fam": "Adenoviridae",
"name": "California sea lion adenovirus 1 strain Zc11-030"
},
{
"acc": "NC_023760.1",
"pctid": "80.6",
"aln": "7",
"glb": "0",
"len": "28941",
"cvgpct": "4",
"depth": "0.033",
"cvg": "_______________O_________",
"fam": "Coronaviridae",
"name": "Mink coronavirus strain WD1127, complete genome"
},
{
"acc": "NC_003391.1",
"pctid": "84.3",
"aln": "18",
"glb": "2",
"len": "205719",
"cvgpct": "4",
"depth": "0.0103",
"cvg": "_O_______________________",
"fam": "Poxviridae",
"name": "Camelpox virus"
},
{
"acc": "MH687941.1",
"pctid": "92.8",
"aln": "9",
"glb": "0",
"len": "28008",
"cvgpct": "4",
"depth": "0.0184",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_47_c1, complete genome"
},
{
"acc": "NC_028814.1",
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"cvg": "_____O_._______.______.__",
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},
{
"acc": "AP009048.1_3000263",
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"depth": "0.784",
"cvg": "______O__________________",
"fam": "AMR",
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{
"acc": "MK720946.1",
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"depth": "0.119",
"cvg": "_________.___O__.._______",
"fam": "Coronaviridae",
"name": "Rhinolophus bat coronavirus HKU32 strain TLC28A, complete genome"
},
{
"acc": "MH687960.1",
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"depth": "0.00945",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_17819_22, complete genome"
},
{
"acc": "MH687951.1",
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"depth": "0.00784",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_78, complete genome"
},
{
"acc": "KF530134.1",
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"depth": "27.2",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Feline coronavirus strain Felis catus/NLD/UU63/2010 genomic sequence"
},
{
"acc": "JQ304479.1",
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"depth": "0.0263",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Feline coronavirus isolate FIPV603 spike protein (spike) gene, partial cds"
},
{
"acc": "NC_028107.1",
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"depth": "0.0223",
"cvg": "____o__._______O_________",
"fam": "Adenoviridae",
"name": "Simian adenovirus 19 strain AA153"
},
{
"acc": "KY073745.1",
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"depth": "0.0111",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "NL63-related bat coronavirus strain BtKYNL63-9b, complete genome"
},
{
"acc": "KF294381.1",
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"depth": "0.38",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Neixiang Md bat coronavirus isolate Neixiang-31 orf1ab polyprotein gene, partial cds"
},
{
"acc": "NC_014899.1",
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"len": "35203",
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"depth": "0.0134",
"cvg": "____O____________________",
"fam": "Adenoviridae",
"name": "Murine adenovirus 2"
},
{
"acc": "GQ152141.1",
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"len": "28897",
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"depth": "0.0115",
"cvg": "______________O__________",
"fam": "Coronaviridae",
"name": "Feline coronavirus strain FCoV/NTU156/P/2007, complete genome"
},
{
"acc": "NC_028752.1",
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"len": "27395",
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"depth": "0.0115",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015, complete genome"
},
{
"acc": "NC_017825.1",
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"depth": "0.0281",
"cvg": "____Oo.__________________",
"fam": "Adenoviridae",
"name": "Chimpanzee adenovirus Y25"
},
{
"acc": "NC_019491.1",
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"len": "291144",
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"depth": "0.00216",
"cvg": "____O____________________",
"fam": "Alloherpesviridae",
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},
{
"acc": "NC_028811.1",
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"len": "27935",
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"depth": "0.0949",
"cvg": "___________.O____________",
"fam": "Coronaviridae",
"name": "BtMr-AlphaCoV/SAX2011, complete genome"
},
{
"acc": "KF530117.1",
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"depth": "5.65",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Feline coronavirus strain Felis catus/NLD/UU82/2010 genomic sequence"
},
{
"acc": "MK249068.1",
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"len": "11891",
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"depth": "0.0743",
"cvg": "_____oO__________________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus PLMg1 pp1a (ORF1a), pp1ab (ORF1b), and nucleocapsid genes, partial cds; and ORF9 gene, complete cds"
},
{
"acc": "MH974772.1",
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"len": "14299",
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"depth": "0.0837",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate BtCoV_SJRP08I RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "MK211370.1",
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"len": "28175",
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"depth": "0.0438",
"cvg": "_______O__.._____________",
"fam": "Coronaviridae",
"name": "Coronavirus BtSk-AlphaCoV/GX2018B, complete genome"
},
{
"acc": "KJ473803.1",
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"len": "12710",
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"depth": "0.133",
"cvg": "_______O._.______________",
"fam": "Coronaviridae",
"name": "BtMf-AlphaCoV/HuB2013-a spike glycoprotein gene, complete cds"
},
{
"acc": "FJ768952_3000237",
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"depth": "1.72",
"cvg": "ooO._o_o__.__.__o..______",
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},
{
"acc": "KU552072.1",
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"len": "14045",
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"depth": "0.886",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus/4292/2013/Desmodus rotundus/Brazil RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "NC_006273.2",
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"len": "235646",
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"depth": "0.00243",
"cvg": "_________________O_______",
"fam": "Herpesviridae",
"name": "Human herpesvirus 5 strain Merlin"
},
{
"acc": "MF375374.1",
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"len": "28079",
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"depth": "0.133",
"cvg": "______________O__________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate CH/JXJA/2017, complete genome"
},
{
"acc": "MH687937.1",
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"len": "28236",
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"depth": "0.00637",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_32, complete genome"
},
{
"acc": "KF294378.1",
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"len": "6926",
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"depth": "0.103",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Lushi Ml bat coronavirus isolate Neixiang-52 orf1ab polyprotein gene, partial cds"
},
{
"acc": "NC_022103.1",
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"len": "28035",
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"depth": "0.0524",
"cvg": "______________O__________",
"fam": "Coronaviridae",
"name": "Bat coronavirus CDPHE15/USA/2006, complete genome"
},
{
"acc": "NC_034446.1",
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"len": "147346",
"cvgpct": "4",
"depth": "0.0138",
"cvg": "____________O____________",
"fam": "Herpesviridae",
"name": "Ateline alphaherpesvirus 1 isolate Lennette"
},
{
"acc": "NC_027708.1",
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"len": "31848",
"cvgpct": "4",
"depth": "0.0568",
"cvg": "__________.__.O__________",
"fam": "Adenoviridae",
"name": "Skunk adenovirus PB1"
},
{
"acc": "KJ473800.1",
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"glb": "0",
"len": "28735",
"cvgpct": "4",
"depth": "0.0139",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "BtMf-AlphaCoV/HeN2013, complete genome"
},
{
"acc": "KX285991.1",
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"glb": "0",
"len": "17507",
"cvgpct": "4",
"depth": "0.0538",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Chaerephon bat coronavirus/Kenya/KY22/2006 PREDICT_AAUHW RNA-dependent RNA polymerase mRNA, partial cds"
},
{
"acc": "NC_025962.1",
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"len": "31735",
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"depth": "0.0397",
"cvg": "___O_____________________",
"fam": "Adenoviridae",
"name": "Psittacine adenovirus 3 isolate HKU/Parrot19"
},
{
"acc": "JQ989269.1",
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"glb": "1",
"len": "28492",
"cvgpct": "4",
"depth": "0.0837",
"cvg": "_______._______O_________",
"fam": "Coronaviridae",
"name": "Hipposideros bat coronavirus HKU10 isolate LSH5A, complete genome"
},
{
"acc": "KF294382.1",
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"len": "6886",
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"depth": "0.283",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Anlong Ms bat coronavirus isolate Neixiang-32 orf1ab polyprotein gene, partial cds"
},
{
"acc": "KF530128.1",
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"len": "5917",
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"depth": "0.645",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Feline coronavirus strain Felis catus/NLD/UU60/2010 genomic sequence"
},
{
"acc": "MH687955.1",
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"glb": "0",
"len": "28219",
"cvgpct": "4",
"depth": "0.0169",
"cvg": "__________oO_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16845_47, complete genome"
},
{
"acc": "NC_001460.1",
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"glb": "0",
"len": "34125",
"cvgpct": "4",
"depth": "0.0107",
"cvg": "______________O__________",
"fam": "Adenoviridae",
"name": "Human adenovirus A"
},
{
"acc": "NC_028833.1",
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"glb": "0",
"len": "27783",
"cvgpct": "4",
"depth": "0.0458",
"cvg": "________._.___________O__",
"fam": "Coronaviridae",
"name": "BtNv-AlphaCoV/SC2013, complete genome"
},
{
"acc": "NC_028824.1",
"pctid": "86.3",
"aln": "18",
"glb": "0",
"len": "26975",
"cvgpct": "4",
"depth": "0.0432",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "BtRf-AlphaCoV/YN2012, complete genome"
},
{
"acc": "MH687962.1",
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"glb": "0",
"len": "27752",
"cvgpct": "4",
"depth": "0.00739",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_17819_50, complete genome"
},
{
"acc": "FJ647223.1",
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"aln": "4",
"glb": "0",
"len": "31386",
"cvgpct": "4",
"depth": "0.0157",
"cvg": "_____________O___________",
"fam": "Coronaviridae",
"name": "Murine coronavirus MHV-1, complete genome"
},
{
"acc": "HQ392471.1",
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"aln": "77",
"glb": "0",
"len": "29252",
"cvgpct": "4",
"depth": "0.243",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU20, complete genome"
},
{
"acc": "KT253269.1",
"pctid": "87.5",
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"glb": "0",
"len": "1",
"cvgpct": "4",
"depth": "869",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "229E-related bat coronavirus isolate BtCoV/KW2E-F151/Hip_cf._rub/GHA/2011 orf1ab, orf1a, spike glycoprotein, orf4, E, M, N, and orf8 genes, complete cds"
},
{
"acc": "KX285797.1",
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"glb": "0",
"len": "17259",
"cvgpct": "4",
"depth": "0.0275",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Coronavirus PREDICT CoV-12 PREDICT_CoV-12/Araguari-31 RNA-dependent RNA polymerase mRNA, partial cds"
},
{
"acc": "JN183883.1",
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"aln": "22",
"glb": "0",
"len": "29222",
"cvgpct": "4",
"depth": "0.0702",
"cvg": "__________O____._________",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU54, complete genome"
},
{
"acc": "NC_002645.1",
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"aln": "18",
"glb": "0",
"len": "27317",
"cvgpct": "4",
"depth": "0.064",
"cvg": "______________O__________",
"fam": "Coronaviridae",
"name": "Human coronavirus 229E, complete genome"
},
{
"acc": "AJ011502.1_3004122",
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"aln": "9",
"glb": "0",
"len": "1125",
"cvgpct": "4",
"depth": "0.672",
"cvg": "_.____.O_.________.__.___",
"fam": "AMR",
"name": "Klebsiella pneumoniae OmpK37,Klebsiella pneumoniae"
},
{
"acc": "MH687965.1",
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"aln": "5",
"glb": "0",
"len": "28115",
"cvgpct": "4",
"depth": "0.00928",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_20745_17, complete genome"
},
{
"acc": "FJ938051.1",
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"glb": "0",
"len": "29232",
"cvgpct": "4",
"depth": "0.0264",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus RM, complete genome"
},
{
"acc": "MH891586.1",
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"aln": "5",
"glb": "0",
"len": "28024",
"cvgpct": "4",
"depth": "0.0157",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate S97, complete genome"
},
{
"acc": "JQ900256.1",
"pctid": "91.9",
"aln": "6",
"glb": "0",
"len": "12",
"cvgpct": "4",
"depth": "37.2",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Human coronavirus NL63 strain NL63/DEN/2009/22 genomic sequence"
},
{
"acc": "KU182966.1",
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"len": "1543",
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"depth": "0.527",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Bat coronavirus P1ab (ORF1ab) gene, partial cds; spike protein (S), 3a protein (ORF3a), envelope protein (E), and membrane protein (M) genes, complete cds; and nucleocapsid protein (N) gene, partial cds"
},
{
"acc": "MH938450.1",
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"glb": "0",
"len": "28146",
"cvgpct": "4",
"depth": "0.0572",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206679-3/2010, complete genome"
},
{
"acc": "JQ731782.1",
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"len": "13786",
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"depth": "1.17",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Coronavirus BtCoV/KP816/Phy_dis/PAN/2011 RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "MG923574.2",
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"aln": "489",
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"len": "147",
"cvgpct": "4",
"depth": "373",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Bat alphacoronavirus isolate BtCoV/020_16/M.dau/FIN/2016 polyprotein, spike protein, hypothetical protein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds"
},
{
"acc": "KF530270.1",
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"aln": "14",
"glb": "0",
"len": "40",
"cvgpct": "4",
"depth": "33",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Feline coronavirus strain feline/USA/Muff1-09/2008 genomic sequence"
},
{
"acc": "KX286255.1",
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"aln": "27",
"glb": "0",
"len": "17902",
"cvgpct": "4",
"depth": "0.0689",
"cvg": "O________________________",
"fam": "Coronaviridae",
"name": "Kenya bat coronavirus/KY33/2006 PREDICT_ZB12038 RNA-dependent RNA polymerase mRNA, partial cds"
},
{
"acc": "KY370054.1",
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"aln": "92",
"glb": "0",
"len": "392",
"cvgpct": "4",
"depth": "14.1",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Rodent coronavirus isolate RtClan-CoV/GZ2015 ORF1ab polyprotein gene, partial cds; and spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds"
},
{
"acc": "NC_044934.1",
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"aln": "74",
"glb": "4",
"len": "34185",
"cvgpct": "4",
"depth": "0.24",
"cvg": "____________O____________",
"fam": "Adenoviridae",
"name": "Recombinant adenovirus and mutant adenovirus induced from bovine adenovirus type 1"
},
{
"acc": "MH687943.1",
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"aln": "5",
"glb": "0",
"len": "28240",
"cvgpct": "4",
"depth": "0.0101",
"cvg": "___________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_5, complete genome"
},
{
"acc": "MF094685.1",
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"aln": "86",
"glb": "2",
"len": "27200",
"cvgpct": "4",
"depth": "0.354",
"cvg": "________._______O______._",
"fam": "Coronaviridae",
"name": "Swine acute diarrhea syndrome related coronavirus isolate 8462, complete genome"
},
{
"acc": "MN065811.1",
"pctid": "83.9",
"aln": "16",
"glb": "1",
"len": "28119",
"cvgpct": "4",
"depth": "0.0751",
"cvg": "______________O._________",
"fam": "Coronaviridae",
"name": "Bat alphacoronavirus strain BtCoV/008_16/M.bra/FIN/2016, complete genome"
},
{
"acc": "EF434381.1",
"pctid": "90.2",
"aln": "28",
"glb": "0",
"len": "20246",
"cvgpct": "4",
"depth": "0.0873",
"cvg": "____O____________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus Shandong/977/2006 spike protein (S) gene, complete cds"
},
{
"acc": "KR270796.1",
"pctid": "83.8",
"aln": "8",
"glb": "0",
"len": "27765",
"cvgpct": "4",
"depth": "0.0256",
"cvg": "________________O________",
"fam": "Coronaviridae",
"name": "Porcine respiratory coronavirus strain OH7269, complete genome"
},
{
"acc": "KY566209.1",
"pctid": "81.4",
"aln": "107",
"glb": "0",
"len": "29440",
"cvgpct": "4",
"depth": "0.42",
"cvg": "__________O______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus strain HLJ/HRB/2016/10, complete genome"
},
{
"acc": "KU556805.1",
"pctid": "93.1",
"aln": "5",
"glb": "0",
"len": "1",
"cvgpct": "4",
"depth": "202",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Infectious bronchitis virus isolate Armidale A3, partial genome"
},
{
"acc": "JQ731783.1",
"pctid": "96.2",
"aln": "362",
"glb": "193",
"len": "13786",
"cvgpct": "4",
"depth": "3.74",
"cvg": "O._______________________",
"fam": "Coronaviridae",
"name": "Coronavirus BtCoV/KP817/Phy_dis/PAN/2011 RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "MF113046.1",
"pctid": "93.5",
"aln": "52",
"glb": "0",
"len": "28924",
"cvgpct": "4",
"depth": "0.0764",
"cvg": "________________O________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus Mink/China/1/2016, complete genome"
},
{
"acc": "NC_002702.1",
"pctid": "85.1",
"aln": "33",
"glb": "2",
"len": "32621",
"cvgpct": "4",
"depth": "0.13",
"cvg": "____________O____________",
"fam": "Adenoviridae",
"name": "Porcine adenovirus 5"
},
{
"acc": "MK472069.1",
"pctid": "85.0",
"aln": "36",
"glb": "16",
"len": "27404",
"cvgpct": "4",
"depth": "0.172",
"cvg": ".__________O_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. isolate WA3301, complete genome"
},
{
"acc": "NC_034972.1",
"pctid": "87.3",
"aln": "31",
"glb": "0",
"len": "27682",
"cvgpct": "4",
"depth": "0.0817",
"cvg": "_________________O_______",
"fam": "Coronaviridae",
"name": "Coronavirus AcCoV-JC34, complete genome"
},
{
"acc": "KY370045.1",
"pctid": "85.7",
"aln": "91",
"glb": "0",
"len": "52",
"cvgpct": "4",
"depth": "128",
"cvg": "________________________O",
"fam": "Coronaviridae",
"name": "Rodent coronavirus isolate RtMruf-CoV-1/JL2014 ORF1ab polyprotein, spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds"
},
{
"acc": "L06249_3003748",
"pctid": "92.7",
"aln": "2",
"glb": "0",
"len": "978",
"cvgpct": "0",
"depth": "0.0838",
"cvg": "__o______________________",
"fam": "AMR",
"name": "oleC,Streptomyces antibioticus"
},
{
"acc": "BA000007.3_3000830",
"pctid": "91.1",
"aln": "2",
"glb": "0",
"len": "1374",
"cvgpct": "0",
"depth": "0.187",
"cvg": ".__._____________________",
"fam": "AMR",
"name": "cpxA,Escherichia coli O157:H7 str. Sakai"
},
{
"acc": "MG772808.1",
"pctid": "88.2",
"aln": "1",
"glb": "0",
"len": "27535",
"cvgpct": "0",
"depth": "0.00185",
"cvg": "_____________.___________",
"fam": "Coronaviridae",
"name": "Human coronavirus NL63 isolate CN0601/14, complete genome"
},
{
"acc": "LC119077.1",
"pctid": "88.2",
"aln": "1",
"glb": "0",
"len": "28550",
"cvgpct": "0",
"depth": "0.00179",
"cvg": "_____________.___________",
"fam": "Coronaviridae",
"name": "Ferret coronavirus genomic RNA, complete genome, strain: FRCoV4370"
},
{
"acc": "HQ203032_3000245",
"pctid": "89.3",
"aln": "2",
"glb": "0",
"len": "345",
"cvgpct": "0",
"depth": "0.38",
"cvg": ".______________._________",
"fam": "AMR",
"name": "RbpA,Mycolicibacterium smegmatis MC2 155"
},
{
"acc": "NC_038432.1",
"pctid": "87.4",
"aln": "2",
"glb": "0",
"len": "8880",
"cvgpct": "0",
"depth": "0.0321",
"cvg": "o________________________",
"fam": "Flaviviridae",
"name": "Hepacivirus N"
},
{
"acc": "NC_009657.1",
"pctid": "93.3",
"aln": "1",
"glb": "0",
"len": "28203",
"cvgpct": "0",
"depth": "0.00213",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Scotophilus bat coronavirus 512, complete genome"
},
{
"acc": "KR265845.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "27993",
"cvgpct": "0",
"depth": "0.00171",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain USA/Oklahoma466/2014 from USA, complete genome"
},
{
"acc": "DQ249228.1",
"pctid": "83.4",
"aln": "2",
"glb": "0",
"len": "12913",
"cvgpct": "0",
"depth": "0.0145",
"cvg": ".._______________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus HKU8 isolate HKU8-1 RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "HQ392469.1",
"pctid": "88.0",
"aln": "1",
"glb": "0",
"len": "29233",
"cvgpct": "0",
"depth": "0.00171",
"cvg": "___________________._____",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU40, complete genome"
},
{
"acc": "KR265759.1",
"pctid": "82.1",
"aln": "1",
"glb": "0",
"len": "27984",
"cvgpct": "0",
"depth": "0.00379",
"cvg": "______________.__________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain USA/Minnesota187/2014 from USA, complete genome"
},
{
"acc": "HQ012367.1",
"pctid": "83.6",
"aln": "1",
"glb": "0",
"len": "29202",
"cvgpct": "0",
"depth": "0.0025",
"cvg": "__________.______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU17, complete genome"
},
{
"acc": "MH687954.1",
"pctid": "78.8",
"aln": "1",
"glb": "0",
"len": "28240",
"cvgpct": "0",
"depth": "0.00517",
"cvg": "_________._______________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16845_24, complete genome"
},
{
"acc": "KF294270.1",
"pctid": "81.9",
"aln": "2",
"glb": "0",
"len": "13023",
"cvgpct": "0",
"depth": "0.014",
"cvg": "__.._____________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate Anlong-12 RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "MK071625.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "28013",
"cvgpct": "0",
"depth": "0.00171",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain COL/Antioquia/2014, complete genome"
},
{
"acc": "KY770856.1",
"pctid": "86.1",
"aln": "2",
"glb": "0",
"len": "12322",
"cvgpct": "0",
"depth": "0.0157",
"cvg": "_..______________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate Anlong-54 RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "MK211372.1",
"pctid": "93.3",
"aln": "1",
"glb": "0",
"len": "28238",
"cvgpct": "0",
"depth": "0.00212",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Coronavirus BtSk-AlphaCoV/GX2018D, complete genome"
},
{
"acc": "NC_001729.1",
"pctid": "81.0",
"aln": "2",
"glb": "0",
"len": "4726",
"cvgpct": "0",
"depth": "0.0525",
"cvg": "________________o________",
"fam": "Parvoviridae",
"name": "Adeno-associated virus - 3"
},
{
"acc": "EF434376.1",
"pctid": "86.5",
"aln": "2",
"glb": "0",
"len": "15670",
"cvgpct": "0",
"depth": "0.00849",
"cvg": "__o______________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus Fujian/773/2005 helicase (Hel) gene, partial cds"
},
{
"acc": "AP009048_3000027",
"pctid": "100.0",
"aln": "2",
"glb": "1",
"len": "1173",
"cvgpct": "0",
"depth": "0.251",
"cvg": ".._______________________",
"fam": "AMR",
"name": "emrA,Escherichia coli str. K-12 substr. W3110"
},
{
"acc": "KT323979.1",
"pctid": "80.4",
"aln": "2",
"glb": "1",
"len": "27953",
"cvgpct": "0",
"depth": "0.00876",
"cvg": "________________o________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain CV777, complete genome"
},
{
"acc": "MH687942.1",
"pctid": "93.3",
"aln": "1",
"glb": "0",
"len": "28321",
"cvgpct": "0",
"depth": "0.00212",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_47_c2, complete genome"
},
{
"acc": "NC_006261.1",
"pctid": "85.2",
"aln": "2",
"glb": "0",
"len": "4393",
"cvgpct": "0",
"depth": "0.0569",
"cvg": "______.._________________",
"fam": "Parvoviridae",
"name": "Adeno-associated virus - 8"
},
{
"acc": "NC_030860.1",
"pctid": "89.1",
"aln": "1",
"glb": "0",
"len": "29581",
"cvgpct": "0",
"depth": "0.00156",
"cvg": "_____.___________________",
"fam": "Adenoviridae",
"name": "Bat mastadenovirus WIV12"
},
{
"acc": "KY370046.1",
"pctid": "87.3",
"aln": "2",
"glb": "0",
"len": "8",
"cvgpct": "0",
"depth": "13.8",
"cvg": "________________________o",
"fam": "Coronaviridae",
"name": "Rodent coronavirus isolate RtMruf-CoV-2/JL2014 ORF1ab polyprotein, hemagglutinin-esterase protein, spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds"
},
{
"acc": "U00096_3000793",
"pctid": "99.7",
"aln": "2",
"glb": "1",
"len": "3123",
"cvgpct": "0",
"depth": "0.0964",
"cvg": "____________._.__________",
"fam": "AMR",
"name": "mdtB,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "KU182954.1",
"pctid": "82.2",
"aln": "2",
"glb": "0",
"len": "12050",
"cvgpct": "0",
"depth": "0.0154",
"cvg": "o________________________",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate MLHJC4 P1ab gene, partial cds"
},
{
"acc": "NC_025678.1",
"pctid": "80.0",
"aln": "1",
"glb": "0",
"len": "32661",
"cvgpct": "0",
"depth": "0.00337",
"cvg": "______________.__________",
"fam": "Adenoviridae",
"name": "Simian adenovirus DM-2014 isolate 23336"
},
{
"acc": "MK032689.1",
"pctid": "77.9",
"aln": "1",
"glb": "0",
"len": "28029",
"cvgpct": "0",
"depth": "0.00339",
"cvg": "__________.______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate KNU-1815, complete genome"
},
{
"acc": "KJ473798.1",
"pctid": "97.8",
"aln": "2",
"glb": "0",
"len": "28755",
"cvgpct": "0",
"depth": "0.00313",
"cvg": "___________o_____________",
"fam": "Coronaviridae",
"name": "BtMf-AlphaCoV/HuB2013, complete genome"
},
{
"acc": "MK392335.1",
"pctid": "95.7",
"aln": "1",
"glb": "0",
"len": "28029",
"cvgpct": "0",
"depth": "0.00164",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate LW/L, complete genome"
},
{
"acc": "U00096_3003578",
"pctid": "95.5",
"aln": "2",
"glb": "1",
"len": "969",
"cvgpct": "0",
"depth": "0.228",
"cvg": "___________________.___._",
"fam": "AMR",
"name": "pmrF,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "L36601_3003036",
"pctid": "95.0",
"aln": "1",
"glb": "0",
"len": "1710",
"cvgpct": "0",
"depth": "0.0234",
"cvg": "______________________.__",
"fam": "AMR",
"name": "oleB,Streptomyces antibioticus"
},
{
"acc": "MH687948.1",
"pctid": "89.4",
"aln": "2",
"glb": "0",
"len": "28255",
"cvgpct": "0",
"depth": "0.00499",
"cvg": "__________.._____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_7, complete genome"
},
{
"acc": "MH006960.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "27676",
"cvgpct": "0",
"depth": "0.00173",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain PEDV/MEX/VER/01/2014, complete genome"
},
{
"acc": "KU182965.1",
"pctid": "87.0",
"aln": "1",
"glb": "0",
"len": "30321",
"cvgpct": "0",
"depth": "0.00178",
"cvg": "______________.__________",
"fam": "Coronaviridae",
"name": "Bat coronavirus isolate JPDB144, complete genome"
},
{
"acc": "U00096.3_3003841",
"pctid": "100.0",
"aln": "2",
"glb": "2",
"len": "678",
"cvgpct": "0",
"depth": "0.442",
"cvg": "_________________..______",
"fam": "AMR",
"name": "kdpE,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "NC_006152.1",
"pctid": "86.6",
"aln": "3",
"glb": "0",
"len": "4642",
"cvgpct": "0",
"depth": "0.0819",
"cvg": "_______.______o__________",
"fam": "Parvoviridae",
"name": "Adeno-associated virus 5"
},
{
"acc": "MN026166.1",
"pctid": "94.6",
"aln": "1",
"glb": "0",
"len": "1",
"cvgpct": "0",
"depth": "37",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "Human coronavirus NL63 isolate NL63_KLF_01_2018, partial genome"
},
{
"acc": "KJ645702.1",
"pctid": "77.8",
"aln": "1",
"glb": "0",
"len": "27989",
"cvgpct": "0",
"depth": "0.00514",
"cvg": "_____________.___________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain USA/Ohio126/2014, complete genome"
},
{
"acc": "AP009048_3000829",
"pctid": "100.0",
"aln": "6",
"glb": "3",
"len": "1404",
"cvgpct": "0",
"depth": "0.493",
"cvg": "_.__o__._________._____._",
"fam": "AMR",
"name": "baeS,Escherichia coli str. K-12 substr. W3110"
},
{
"acc": "MK644603.1",
"pctid": "97.6",
"aln": "1",
"glb": "0",
"len": "28043",
"cvgpct": "0",
"depth": "0.00146",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate M3-SX2017, complete genome"
},
{
"acc": "MH581489.1",
"pctid": "93.5",
"aln": "1",
"glb": "0",
"len": "28066",
"cvgpct": "0",
"depth": "0.00164",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate CH/HBTS/2017, complete genome"
},
{
"acc": "NC_035797.1",
"pctid": "79.3",
"aln": "1",
"glb": "0",
"len": "142974",
"cvgpct": "0",
"depth": "0.000811",
"cvg": "__.______________________",
"fam": "Poxviridae",
"name": "UNVERIFIED: Squirrelpox virus Berlin_2015"
},
{
"acc": "JQ023162.1",
"pctid": "78.8",
"aln": "1",
"glb": "1",
"len": "27931",
"cvgpct": "0",
"depth": "0.00541",
"cvg": "_________________._______",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain attenuated DR13, complete genome"
},
{
"acc": "KY370048.1",
"pctid": "84.7",
"aln": "1",
"glb": "0",
"len": "1",
"cvgpct": "0",
"depth": "59",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "Rodent coronavirus isolate RtMm-CoV/GD2015 ORF1ab polyprotein, hemagglutinin-esterase protein, spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds"
},
{
"acc": "KX839248.1",
"pctid": "80.4",
"aln": "2",
"glb": "0",
"len": "27533",
"cvgpct": "0",
"depth": "0.00817",
"cvg": "______________o__________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain 85-7-mutant2, complete genome"
},
{
"acc": "KX285873.1",
"pctid": "86.4",
"aln": "1",
"glb": "0",
"len": "17507",
"cvgpct": "0",
"depth": "0.00337",
"cvg": ".________________________",
"fam": "Coronaviridae",
"name": "Chaerephon bat coronavirus/Kenya/KY22/2006 PREDICT_AATBM RNA-dependent RNA polymerase mRNA, partial cds"
},
{
"acc": "NC_040681.1",
"pctid": "90.8",
"aln": "1",
"glb": "0",
"len": "158250",
"cvgpct": "0",
"depth": "0.000411",
"cvg": "___._____________________",
"fam": "Unknown",
"name": "Bufonid herpesvirus 1 strain FO1_2015"
},
{
"acc": "MF457591.1",
"pctid": "88.0",
"aln": "2",
"glb": "0",
"len": "14201",
"cvgpct": "0",
"depth": "0.0106",
"cvg": "_____o___________________",
"fam": "Coronaviridae",
"name": "Feline coronavirus strain OH11927 polyprotein 1ab gene, partial cds; and spike protein, non-structural protein 3a, non-structural protein 3b, non-structural protein 3c, envelope protein, membrane protein, nucleocapsid protein, non-structural protein 7a, and non-structural protein 7b genes, complete cds"
},
{
"acc": "NC_016993.1",
"pctid": "82.4",
"aln": "2",
"glb": "0",
"len": "26689",
"cvgpct": "0",
"depth": "0.00682",
"cvg": "____________________o____",
"fam": "Coronaviridae",
"name": "Magpie-robin coronavirus HKU18, complete genome"
},
{
"acc": "MH726401.1",
"pctid": "77.3",
"aln": "1",
"glb": "0",
"len": "28038",
"cvgpct": "0",
"depth": "0.00535",
"cvg": "__________.______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate GDS41, complete genome"
},
{
"acc": "AP009048.1_3000491",
"pctid": "96.6",
"aln": "3",
"glb": "1",
"len": "3114",
"cvgpct": "0",
"depth": "0.131",
"cvg": ".._____________________._",
"fam": "AMR",
"name": "acrD,Escherichia coli str. K-12 substr. W3110"
},
{
"acc": "NC_003521.1",
"pctid": "97.0",
"aln": "2",
"glb": "0",
"len": "241087",
"cvgpct": "0",
"depth": "0.000274",
"cvg": "__________o______________",
"fam": "Herpesviridae",
"name": "Panine herpesvirus 2 strain Heberling"
},
{
"acc": "NC_018478.1",
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"glb": "0",
"len": "4417",
"cvgpct": "0",
"depth": "0.0113",
"cvg": "________________________o",
"fam": "Peribunyaviridae",
"name": "Simbu virus Gn-Gc-NSm gene for M polyprotein"
},
{
"acc": "AY518894.1",
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"glb": "0",
"len": "27555",
"cvgpct": "0",
"depth": "0.00152",
"cvg": ".________________________",
"fam": "Coronaviridae",
"name": "Human group 1 coronavirus associated with pneumonia, complete genome"
},
{
"acc": "NC_033176.1",
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"aln": "1",
"glb": "0",
"len": "224064",
"cvgpct": "0",
"depth": "0.000152",
"cvg": "________________________.",
"fam": "Herpesviridae",
"name": "Cynomolgus cytomegalovirus isolate 31908"
},
{
"acc": "JQ394987_3001328",
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"glb": "1",
"len": "1233",
"cvgpct": "0",
"depth": "0.122",
"cvg": "_._______________________",
"fam": "AMR",
"name": "Escherichia coli mdfA,Escherichia coli"
},
{
"acc": "MN315264.1",
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"glb": "0",
"len": "27937",
"cvgpct": "0",
"depth": "0.00598",
"cvg": "__________o______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain AH-2018-HF1, complete genome"
},
{
"acc": "NC_001731.1",
"pctid": "76.8",
"aln": "2",
"glb": "0",
"len": "190289",
"cvgpct": "0",
"depth": "0.00152",
"cvg": "__________o______________",
"fam": "Poxviridae",
"name": "Molluscum contagiosum virus subtype 1"
},
{
"acc": "KY420075.1",
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"glb": "0",
"len": "27967",
"cvgpct": "0",
"depth": "0.00511",
"cvg": "_________________._______",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain PEDV-SX, complete genome"
},
{
"acc": "NC_014564.2",
"pctid": "82.0",
"aln": "2",
"glb": "0",
"len": "45413",
"cvgpct": "0",
"depth": "0.0033",
"cvg": "_________o_______________",
"fam": "Adenoviridae",
"name": "Turkey adenovirus 1"
},
{
"acc": "FJ938062.1",
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"aln": "2",
"glb": "0",
"len": "29266",
"cvgpct": "0",
"depth": "0.00567",
"cvg": "__________o______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU9, complete genome"
},
{
"acc": "MG428702.1",
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"glb": "0",
"len": "27781",
"cvgpct": "0",
"depth": "0.00778",
"cvg": "____________o____________",
"fam": "Coronaviridae",
"name": "Human coronavirus NL63 isolate Kilifi_HH_3807_11-May-2010, complete genome"
},
{
"acc": "KP890336.1",
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"aln": "1",
"glb": "0",
"len": "27996",
"cvgpct": "0",
"depth": "0.00154",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain CH/HNYF/14, complete genome"
},
{
"acc": "KF530115.1",
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"aln": "1",
"glb": "0",
"len": "88",
"cvgpct": "0",
"depth": "1.14",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Feline coronavirus strain Felis catus/NLD/UU68/2010 genomic sequence"
},
{
"acc": "KJ777678.1",
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"glb": "0",
"len": "28038",
"cvgpct": "0",
"depth": "0.00139",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain LZW isolate CPGEN_20140427, complete genome"
},
{
"acc": "MN064712.1",
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"glb": "0",
"len": "19317",
"cvgpct": "0",
"depth": "0.00725",
"cvg": "__o______________________",
"fam": "Coronaviridae",
"name": "Porcine deltacoronavirus isolate CH/XJYN/2016 spike protein (S) gene, complete cds"
},
{
"acc": "KY078912.1",
"pctid": "84.6",
"aln": "1",
"glb": "0",
"len": "19317",
"cvgpct": "0",
"depth": "0.00336",
"cvg": "__.______________________",
"fam": "Coronaviridae",
"name": "Porcine deltacoronavirus isolate CHN-GD16-09 spike protein gene, complete cds"
},
{
"acc": "KM975738.1",
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"aln": "2",
"glb": "0",
"len": "28029",
"cvgpct": "0",
"depth": "0.00974",
"cvg": "______________o__________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain USA/IA/2013/19321, complete genome"
},
{
"acc": "NC_026421.1",
"pctid": "92.0",
"aln": "2",
"glb": "0",
"len": "182380",
"cvgpct": "0",
"depth": "0.000888",
"cvg": "_____________.__________.",
"fam": "Herpesviridae",
"name": "Equid herpesvirus 5 strain 2-141/67"
},
{
"acc": "MG916901.1",
"pctid": "82.6",
"aln": "1",
"glb": "0",
"len": "29102",
"cvgpct": "0",
"depth": "0.00237",
"cvg": "____________________.____",
"fam": "Coronaviridae",
"name": "Bat coronavirus BtCoV/Rh/YN2012 isolate BtCoV/Rh/YN2012_Rs3376, complete genome"
},
{
"acc": "KP849472.1",
"pctid": "87.6",
"aln": "2",
"glb": "0",
"len": "30004",
"cvgpct": "0",
"depth": "0.00377",
"cvg": "________________o________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus 1 strain 23/03, complete genome"
},
{
"acc": "DQ445911.1",
"pctid": "83.1",
"aln": "4",
"glb": "0",
"len": "27550",
"cvgpct": "0",
"depth": "0.0159",
"cvg": ".________._..____________",
"fam": "Coronaviridae",
"name": "Human coronavirus NL63 isolate Amsterdam 057, complete genome"
},
{
"acc": "AP009048.1_3000508",
"pctid": "97.7",
"aln": "2",
"glb": "1",
"len": "825",
"cvgpct": "0",
"depth": "0.364",
"cvg": "____________._______.____",
"fam": "AMR",
"name": "gadX,Escherichia coli str. K-12 substr. W3110"
},
{
"acc": "KC117184.1",
"pctid": "85.2",
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"glb": "0",
"len": "17695",
"cvgpct": "0",
"depth": "0.00723",
"cvg": "o________________________",
"fam": "Coronaviridae",
"name": "Coronavirus Mex_CoV-6 isolate PMX-210 replicase polyprotein ORF 1ab gene, partial cds"
},
{
"acc": "KP981644.1",
"pctid": "84.0",
"aln": "1",
"glb": "0",
"len": "29278",
"cvgpct": "0",
"depth": "0.00321",
"cvg": "______________.__________",
"fam": "Coronaviridae",
"name": "Canine coronavirus strain CB/05, complete genome"
},
{
"acc": "MH593900.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "28009",
"cvgpct": "0",
"depth": "0.00171",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain S236, complete genome"
},
{
"acc": "LC063838.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "27481",
"cvgpct": "0",
"depth": "0.00175",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus genomic RNA, complete genome, strain: MYG-1/JPN/2014"
},
{
"acc": "LM645057.1",
"pctid": "100.0",
"aln": "1",
"glb": "0",
"len": "28028",
"cvgpct": "0",
"depth": "0.00118",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus L00721/GER/2014, complete genome"
},
{
"acc": "LC215871.1",
"pctid": "82.1",
"aln": "3",
"glb": "0",
"len": "28542",
"cvgpct": "0",
"depth": "0.00725",
"cvg": "_____________.___o_______",
"fam": "Coronaviridae",
"name": "Ferret coronavirus genomic RNA, complete genome, strain: ferret063"
},
{
"acc": "AP009048.1_3003549",
"pctid": "98.3",
"aln": "4",
"glb": "3",
"len": "2052",
"cvgpct": "0",
"depth": "0.292",
"cvg": "___oo____________________",
"fam": "AMR",
"name": "mdtO,Escherichia coli str. K-12 substr. W3110"
},
{
"acc": "KF530116.1",
"pctid": "81.4",
"aln": "1",
"glb": "0",
"len": "66",
"cvgpct": "0",
"depth": "1.55",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "UNVERIFIED: Feline coronavirus strain Felis catus/NLD/UU61/2010 genomic sequence"
},
{
"acc": "MH687967.1",
"pctid": "93.3",
"aln": "1",
"glb": "0",
"len": "27726",
"cvgpct": "0",
"depth": "0.00216",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_20745_8, complete genome"
},
{
"acc": "NC_015323.1",
"pctid": "81.4",
"aln": "2",
"glb": "0",
"len": "45667",
"cvgpct": "0",
"depth": "0.00613",
"cvg": "___________o_____________",
"fam": "Adenoviridae",
"name": "Fowl adenovirus C"
},
{
"acc": "U00096_3001216",
"pctid": "97.3",
"aln": "2",
"glb": "2",
"len": "1209",
"cvgpct": "0",
"depth": "0.248",
"cvg": "___________._______._____",
"fam": "AMR",
"name": "mdtH,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "MG334006.1",
"pctid": "88.5",
"aln": "1",
"glb": "0",
"len": "20599",
"cvgpct": "0",
"depth": "0.00252",
"cvg": "____.____________________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate YnP5 spike glycoprotein (S) gene, complete cds"
},
{
"acc": "MN611521.1",
"pctid": "93.3",
"aln": "1",
"glb": "0",
"len": "27933",
"cvgpct": "0",
"depth": "0.00215",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Scotophilus kuhlii bat coronavirus 512-related isolate HK140714, complete genome"
},
{
"acc": "MK644604.1",
"pctid": "83.3",
"aln": "1",
"glb": "0",
"len": "28046",
"cvgpct": "0",
"depth": "0.00342",
"cvg": "__________.______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate N7-GD2017, complete genome"
},
{
"acc": "NC_006263.1",
"pctid": "85.8",
"aln": "1",
"glb": "0",
"len": "4682",
"cvgpct": "0",
"depth": "0.0286",
"cvg": "______.__________________",
"fam": "Parvoviridae",
"name": "Avian adeno-associated virus strain DA-1"
},
{
"acc": "KT253270.1",
"pctid": "83.2",
"aln": "1",
"glb": "0",
"len": "1",
"cvgpct": "0",
"depth": "137",
"cvg": "________________________.",
"fam": "Coronaviridae",
"name": "229E-related bat coronavirus isolate BtCoV/FO1A-F2/Hip_aba/GHA/2010 orf1ab, orf1a, spike glycoprotein, orf4, E, M, N, and orf8 genes, complete cds"
},
{
"acc": "NC_001266.1",
"pctid": "84.8",
"aln": "1",
"glb": "0",
"len": "159857",
"cvgpct": "0",
"depth": "0.000413",
"cvg": "__.______________________",
"fam": "Poxviridae",
"name": "Rabbit fibroma virus"
},
{
"acc": "MN037494.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "28070",
"cvgpct": "0",
"depth": "0.00171",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain WHLL, complete genome"
},
{
"acc": "NC_009988.1",
"pctid": "94.8",
"aln": "2",
"glb": "0",
"len": "27165",
"cvgpct": "0",
"depth": "0.00353",
"cvg": "_______________________..",
"fam": "Coronaviridae",
"name": "Bat coronavirus HKU2, complete genome"
},
{
"acc": "AE000511.1_3003964",
"pctid": "96.3",
"aln": "2",
"glb": "0",
"len": "1332",
"cvgpct": "0",
"depth": "0.0616",
"cvg": "______o__________________",
"fam": "AMR",
"name": "hp1181,Helicobacter pylori 26695"
},
{
"acc": "MH052684.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "27999",
"cvgpct": "0",
"depth": "0.00171",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate KNU-1705, complete genome"
},
{
"acc": "KX512809.1",
"pctid": "90.7",
"aln": "1",
"glb": "0",
"len": "28151",
"cvgpct": "0",
"depth": "0.00153",
"cvg": "_________________._______",
"fam": "Coronaviridae",
"name": "Ferret enteric coronavirus strain FECV1, complete genome"
},
{
"acc": "MH726408.1",
"pctid": "83.2",
"aln": "4",
"glb": "0",
"len": "28026",
"cvgpct": "0",
"depth": "0.0134",
"cvg": "__________.._____o_______",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate GDS09, complete genome"
},
{
"acc": "NC_033818.1",
"pctid": "79.6",
"aln": "1",
"glb": "0",
"len": "7092",
"cvgpct": "0",
"depth": "0.0214",
"cvg": ".________________________",
"fam": "Picornaviridae",
"name": "Kunsagivirus B clone Bat/CAM/KuV-P2/2013 polyprotein gene"
},
{
"acc": "KY292377.1",
"pctid": "86.0",
"aln": "1",
"glb": "0",
"len": "29303",
"cvgpct": "0",
"depth": "0.00195",
"cvg": "__________.______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus strain HLJ/DQ/2016/01, complete genome"
},
{
"acc": "JQ989271.1",
"pctid": "82.7",
"aln": "1",
"glb": "0",
"len": "28489",
"cvgpct": "0",
"depth": "0.00284",
"cvg": "________.________________",
"fam": "Coronaviridae",
"name": "Rousettus bat coronavirus HKU10 isolate 175A, complete genome"
},
{
"acc": "NC_027016.1",
"pctid": "94.6",
"aln": "2",
"glb": "0",
"len": "226084",
"cvgpct": "0",
"depth": "0.000327",
"cvg": "________________o________",
"fam": "Herpesviridae",
"name": "Papio ursinus cytomegalovirus isolate OCOM4-52"
},
{
"acc": "KM392229.1",
"pctid": "85.5",
"aln": "1",
"glb": "0",
"len": "27437",
"cvgpct": "0",
"depth": "0.00226",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain TC PC177-P2, complete genome"
},
{
"acc": "KY078906.1",
"pctid": "86.2",
"aln": "1",
"glb": "0",
"len": "19306",
"cvgpct": "0",
"depth": "0.00337",
"cvg": "__.______________________",
"fam": "Coronaviridae",
"name": "Porcine deltacoronavirus isolate CHN-GD16-03 spike protein gene, complete cds"
},
{
"acc": "KJ473804.1",
"pctid": "84.8",
"aln": "2",
"glb": "0",
"len": "13024",
"cvgpct": "0",
"depth": "0.0162",
"cvg": "_o_______________________",
"fam": "Coronaviridae",
"name": "BtMf-AlphaCoV/HeN2013-a RNA-dependent RNA polymerase gene, partial cds"
},
{
"acc": "KU893872.1",
"pctid": "95.8",
"aln": "1",
"glb": "0",
"len": "28021",
"cvgpct": "0",
"depth": "0.00171",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus strain PC22A-P120, complete genome"
},
{
"acc": "U00096_3000794",
"pctid": "99.0",
"aln": "2",
"glb": "2",
"len": "3078",
"cvgpct": "0",
"depth": "0.0978",
"cvg": "_______._._______________",
"fam": "AMR",
"name": "mdtC,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "MH687961.1",
"pctid": "91.7",
"aln": "1",
"glb": "0",
"len": "28168",
"cvgpct": "0",
"depth": "0.00213",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_17819_4, complete genome"
},
{
"acc": "X53401_3002891",
"pctid": "85.0",
"aln": "1",
"glb": "0",
"len": "1992",
"cvgpct": "0",
"depth": "0.0402",
"cvg": "__.______________________",
"fam": "AMR",
"name": "otr(A),Streptomyces rimosus"
},
{
"acc": "U00096_3000499",
"pctid": "100.0",
"aln": "2",
"glb": "2",
"len": "1158",
"cvgpct": "0",
"depth": "0.261",
"cvg": "_______.__.______________",
"fam": "AMR",
"name": "acrE,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "U00096_3003577",
"pctid": "97.0",
"aln": "2",
"glb": "1",
"len": "1167",
"cvgpct": "0",
"depth": "0.258",
"cvg": "_______________.___._____",
"fam": "AMR",
"name": "ugd,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "NC_027778.1",
"pctid": "81.0",
"aln": "1",
"glb": "0",
"len": "124244",
"cvgpct": "0",
"depth": "0.000676",
"cvg": "_______________._________",
"fam": "Iridoviridae",
"name": "Scale drop disease virus isolate C4575"
},
{
"acc": "MH687938.1",
"pctid": "94.0",
"aln": "2",
"glb": "0",
"len": "28349",
"cvgpct": "0",
"depth": "0.00409",
"cvg": "___________o_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_39_c1, complete genome"
},
{
"acc": "KJ473797.1",
"pctid": "79.6",
"aln": "1",
"glb": "0",
"len": "28758",
"cvgpct": "0",
"depth": "0.00529",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "BtMf-AlphaCoV/GD2012, complete genome"
},
{
"acc": "MF542265.1",
"pctid": "81.1",
"aln": "1",
"glb": "0",
"len": "27271",
"cvgpct": "0",
"depth": "0.00389",
"cvg": "___________._____________",
"fam": "Coronaviridae",
"name": "Human coronavirus 229E strain 229E/Haiti-1/2016, complete genome"
},
{
"acc": "MH687944.1",
"pctid": "89.4",
"aln": "2",
"glb": "0",
"len": "28219",
"cvgpct": "0",
"depth": "0.00503",
"cvg": "__________.._____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_53, complete genome"
},
{
"acc": "MG916904.1",
"pctid": "95.7",
"aln": "1",
"glb": "0",
"len": "28751",
"cvgpct": "0",
"depth": "0.00163",
"cvg": "______________.__________",
"fam": "Coronaviridae",
"name": "Bat coronavirus BtCoV/Rh/YN2012 isolate BtCoV/Rh/YN2012_Ra13591, complete genome"
},
{
"acc": "NC_001401.2",
"pctid": "79.1",
"aln": "2",
"glb": "0",
"len": "4679",
"cvgpct": "0",
"depth": "0.0492",
"cvg": "__________________o______",
"fam": "Parvoviridae",
"name": "Adeno-associated virus - 2"
},
{
"acc": "AP009048_3003576",
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{
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{
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"cvg": "_____________.___________",
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"name": "Betacoronavirus sp. strain VZ_BetaCoV_16715_52, complete genome"
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{
"acc": "MH726381.1",
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"cvg": "__________.._____________",
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"name": "Porcine epidemic diarrhea virus isolate GDS43, complete genome"
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{
"acc": "NC_003678.1",
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"cvg": "_________o_______________",
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"name": "Pestivirus giraffe-1 H138 complete genome"
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{
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"cvg": "________.______________._",
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"name": "Swine acute diarrhea syndrome related coronavirus isolate 141388, complete genome"
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{
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{
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"cvg": "___________._____________",
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"name": "Porcine epidemic diarrhea virus strain USA/2014/IL/20697 P7, complete genome"
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{
"acc": "GU553361.1",
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"depth": "0.00499",
"cvg": "__________o______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU22 isolate TCVSP-ROTTIER-00022, complete genome"
},
{
"acc": "NC_001701.1",
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"cvg": "_______________._________",
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"name": "Goose parvovirus"
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{
"acc": "NC_019495.1",
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"cvg": "__.______________________",
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{
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"cvg": "__________.._____________",
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"name": "Porcine epidemic diarrhea virus isolate S100, complete genome"
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{
"acc": "HQ012369.1",
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"cvg": "__________o______________",
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"name": "Feline coronavirus UU21, complete genome"
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{
"acc": "NC_014468.1",
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"cvg": "____________..__..o._____",
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{
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"cvg": "________________________.",
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"name": "Sequence 2 from Patent WO2016130569"
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{
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{
"acc": "DQ249247.1",
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{
"acc": "U00096_3000792",
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"cvg": ".________________________",
"fam": "AMR",
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{
"acc": "NC_016447.1",
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"cvg": "_____________o___________",
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{
"acc": "MH891584.1",
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"cvgpct": "0",
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"cvg": "__________o______________",
"fam": "Coronaviridae",
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{
"acc": "EF203066.1",
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"cvg": "_______________________o_",
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{
"acc": "LT898425.1",
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"cvg": "___________._____________",
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{
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"cvg": "______________._____o____",
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"name": "Coronavirus BtRs-AlphaCoV/YN2018, complete genome"
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{
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"cvg": "______.._________________",
"fam": "Flaviviridae",
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{
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"cvg": "._.______o__________...._",
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{
"acc": "AB587082_3002069",
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"cvg": "_______________.____.____",
"fam": "AMR",
"name": "CMY-59,Escherichia coli"
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{
"acc": "MH687956.1",
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"len": "28050",
"cvgpct": "0",
"depth": "0.00428",
"cvg": "___________o_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16845_53, complete genome"
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{
"acc": "EU420137.1",
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"len": "28476",
"cvgpct": "0",
"depth": "0.00688",
"cvg": "______________o__________",
"fam": "Coronaviridae",
"name": "Bat coronavirus 1B strain AFCD307, complete genome"
},
{
"acc": "U00096_3000502",
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"len": "3105",
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"cvg": "_____..___________.._____",
"fam": "AMR",
"name": "acrF,Escherichia coli str. K-12 substr. MG1655"
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{
"acc": "NC_027213.1",
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"cvg": "____.____________________",
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{
"acc": "MH615810.1",
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"depth": "0.00504",
"cvg": ".______________________._",
"fam": "Coronaviridae",
"name": "Swine acute diarrhea syndrome coronavirus isolate SADS-CoV-CH-FJWT-2018, complete genome"
},
{
"acc": "NC_012584.1",
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"cvg": "______________.__________",
"fam": "Adenoviridae",
"name": "Murine adenovirus 3"
},
{
"acc": "MH243319.1",
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"len": "28017",
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"depth": "0.00371",
"cvg": "__________.______________",
"fam": "Coronaviridae",
"name": "Porcine epidemic diarrhea virus isolate KNU-1807, complete genome"
},
{
"acc": "MH687958.1",
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"len": "28036",
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"cvg": "__________.o_____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16845_87, complete genome"
},
{
"acc": "MH687952.1",
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"depth": "0.00397",
"cvg": "________.__._____________",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_84, complete genome"
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{
"acc": "MH687947.1",
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"cvg": "______________o____._____",
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"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_63, complete genome"
},
{
"acc": "NC_009020.1",
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"cvgpct": "0",
"depth": "0.00154",
"cvg": "_______________._________",
"fam": "Coronaviridae",
"name": "Bat coronavirus HKU5-1, complete genome"
},
{
"acc": "CP000800.1_3001329",
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"len": "1227",
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"cvg": "__._______._.____________",
"fam": "AMR",
"name": "mdtG,Escherichia coli O139:H28 str. E24377A"
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{
"acc": "HQ392470.1",
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"len": "29255",
"cvgpct": "0",
"depth": "0.00578",
"cvg": "__________o______________",
"fam": "Coronaviridae",
"name": "Feline coronavirus UU19, complete genome"
},
{
"acc": "MH687934.1",
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"len": "28249",
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"depth": "0.0139",
"cvg": "__________oo____________o",
"fam": "Coronaviridae",
"name": "Alphacoronavirus sp. strain VZ_AlphaCoV_16715_23, complete genome"
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{
"acc": "FN649414.1_3004611",
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"cvg": "___._.__________.._._.___",
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"name": "Escherichia coli ampC1 beta-lactamase,Escherichia coli ETEC H10407"
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{
"acc": "NC_034222.1",
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"depth": "0.203",
"cvg": "__________o_o____________",
"fam": "Flaviviridae",
"name": "Mogiana tick virus isolate MGTV/V4/11 segment 1"
},
{
"acc": "NC_001405.1",
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"len": "35937",
"cvgpct": "0",
"depth": "0.00301",
"cvg": "____._____________.______",
"fam": "Adenoviridae",
"name": "Human adenovirus C"
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{
"acc": "U00096_3000833",
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"cvgpct": "0",
"depth": "0.25",
"cvg": "_____..__..___o__________",
"fam": "AMR",
"name": "evgS,Escherichia coli str. K-12 substr. MG1655"
},
{
"acc": "KY370043.1",
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"len": "1",
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"depth": "118",
"cvg": "________________________o",
"fam": "Coronaviridae",
"name": "Rodent coronavirus isolate RtRn-CoV/YN2013 ORF1ab polyprotein, hemagglutinin-esterase protein, spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds"
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{
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"cvg": "_o_______________________",
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],
"fasta": ">Cov.1\nCTTTTGTCTACTCTTCTCAACTAAACGAAATTCTATTGTGGGCCAATGGCTATTGGTCCTCAATATTTGTGAAATTTCGTCTAGCCGGTCTGCGTTAGGAAGGCAAGTGTAGTGCTTGCTGTAAGCTCTAGTGCAGTGTTCCGTCACTGT\n>Cov.8\nATGGTGACAAATTTGTTGGAACATTTGAAGGTGCTGCTGTTGGCACTTTTGTCTTGGACATACGTTCCTATGAGAGGCTGGTTAATTCTGTGTCAGCTGACAAGTTAAGACGTCATGCCGCTGATTATAACAAGTATAAGTACTATAGTGG\n>Cov.10\nAAGTATTTGTACTTCGTTAAGAACCTCAATACTTTATGACGCGGTGCTGTTCTTGGTTTCATCGGATCTACTATCAGACTTCAAGCTGGTAGACAGACCGAGGTTGCCACAAAAAGTTCTTTGTTGTCTGTTTGCGCGTTTGCAGTTGATC\n>Cov.11\nTTACTAAGTACACTATGATGGACCTTTGCTATGCACTCAGAAACTTTGACGAGAAGGATTGCGATATTCTTCGTGATATTCTCGTTCTTACTGGTGCATGCGAGGAATCGTACTTTGATAATCCCAAGTGGTACGACCCTGTCGAGAATG\n>Cov.12\nCCTGGTATGGGTGTCCCACTTGTTACATCTTACTACTCCTATATGATGCCAGTCATGGGTATGACTAATTGTCTTGCCCATGAGTGCTTCCAGAAGAGTGATATCTTTGGCTCTGACTTTAAGACTTTTGATTTGCTTACTTATGACTTTA\n>Cov.13\nGATCCTGAGTATCAGAAGGTGTTTTACACCATGCTTGAGTGGGTTAAGCACCTCACTAAAACTCTACACCAGGGTACTCTTGAAACATTCTCTGTCACTTTGTTGGAAGATGCTTCTAGCAAGTTTTGGACTGAGAGTTTCTATGCTGGTT\n>Cov.14\nAGCCACCACTTAATCGCAACTCTGTTTTTACTGGTTACCAGATTAACAAAGACTCAAGGTTCCAAGTCGGTGAGTTTATATTTGAAAAGTTAGAATACGGTTCTGATACCGTTACTTTCAAAACTACCGCCACTACCAAATTGGTGCCTGG\n>Cov.15\nGGTAGTGGCAAGTCACACTGTGTGATTGGCCTTGGTTTGTATTACCCTGGTGCTCGTATTGTGTTCACTGCCTGCTCTCATGCAGCTGTGGATTCGCTGTGCCATAAGGCTGCCACTGCTTATAGTACTGATAAGTGCTCCCGCATCATCC\n>Cov.16\nGTGCAGTTACAGAAGTACCTTGGTATTGTTACGACAAAGATCCTGTTAACACCAATGTGAAGGCTCTTGAGTATGACTATATGACACATGGCCAATTGGACGGGCTGTGTTTGTTTTGGAATTGCAATGTTGACATGTACCCAGGTTTTGC\n>Cov.17\nAATACACACAGTTGTGCCAATATCTGAATACAACATCGCTCGCAGTTCCTAATTATATGCGTGTGCTTCATTTGGGTGCTAGTAGTGGCTATGGTACTTCACCTGGTAGCTCGGTGCTACGCAGATGGTTACCCGATGACGCCATACTGGT\n>Cov.18\nTTTGATTGGTGTTAATTATCTTGGTGATTTTTCCACCAGTCCAATTACGTCTGGTGAAACGATTCATGCCAACTATATTTTCTGGCGTAACTCTACAGTTATGTCCCAGTCATATAACTCTGTTCTTGATTTGTCCAAATTTAAACTTAA\n>Cov.19\nCATCAGAAGCATTTTTGATTGGTTTTAATTATCTTGGTGAATTATCCACCAGTCCAATTACGTCTGGTGAAACGATTCATGCCAACTTTATATTCTGGCGTAACTCTACAGTTATGTCCCAGTCATATAACTCTGTTCTTGATTTGTCCC\n>Cov.20\nAAGATTAATGAGTGCGTTAAATCTCAATCATCGCGTTATGTGTTTTGCGGTAATGGCACTCATTTATTTAGCGTTGTAAATGCGGCTCCTAATGGTTTCCTGTTTTTACATACTGTGCTGGTACCTACAGAGTGGCAGCAGGTACAGGCA\n>Cov.22\nTATTAATGACACTCGCGTGGACTTGCAGTGGCTTAGCAGGATTGAACGCTACGTTAAATGGCCATGGTACGTGTGGCTTGCCATAGGTTTGGCTGTCATATTTGCCTGCGCCATACTAGTGTTCTGCTGTTTATCTACAGGCTGCTGTGGC\n>Cov.23\nGCAGAACTCGTACGTTCTGGGCGTTTAACCCTGAAACTGATGCCATCATTGTTATTTCTGTCTTTGGTCGAAATTATTCGATCCCAATCATTAAGGCACCAACCGGCATAACCCTCACACTTCTTAGTGGAACACTTCTAGTCGACGGCAT\n>Cov.24\nGGTGTTGTCTGGGTTGCAGTTAATGGTGCTAAAACATCTAACACTGGCCTTGGAACTCGCTCCAGGAACCAGAAGGCTAAGGTGCCTCAATTTAACGTAGCTCTTCCATCTGACATTGTCATTGCTGATAGCGGTAACAGCTCACGAAGC\n>Cov.25\nGCTTGACGAGCCTATATGGAAGAGCTGTCAGCGAGCTTGCACAAACCAGTTAGTAGTTGTTAGTGGAACGGTGACATAATAATCTCTTCTTATACTAGTATTATTACAGGCTTACCATTGCGTATAAGGCTAAATTGTACACATAAAGAGT\n>Other.1\nGAACAACATCCGTACTCTTCGTGCGCAGGCAAGAGAATGCACTCTGGAAACGCTTGAAGAAATGCTGGAAAAATTAGAAGTTGTAGTTAGCGAGCGTCGCGAAGAAGAAAGCGCTGCTGCCGCTGAAGTTGAAGAACGCACTCGTAAAC\n>Other.2\nGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTG\n>Other.3\nGACATCTGACCCGGCTCTGCAGTATGAACGCATAACGCCGGAGTGGACGGCAGAGGCTGTGATCGAGGGGTGTGCCCCACTCACTCCACTGAACATGACCAGAGCTATAGCAGAAATGCATATGGAATACCCACCTTTGGGGATAACTAGA\n>Other.4\nGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTAC\n>Other.5\nCTTTTCCTTGGCCGCGATGTTCAGTTGCACGTACTCTCTAGCTAGGCACTTCCACTCTGGGAAGACGGTGGTTCTTTCGTCGGGGACAATTTTAACTCGCCACCCGCGGTTGTGAAGTGTAATGACGTCAATGGAAGTGGCCACCTCGCCC\n>Other.6\nCTGCTCGCTTCGCTACTTGGAGCCACTATCGACTACGCGATCATGGCGACCACACCCGTCCTGTGGATCCTCTACGCCGGACGCATCGTGGCCGGCATCACCGGCGCCACAGGTGCGGTTGCTGGCGCCTATATCGCCGACATCACCGATG\n>Other.7\nCTTGGAGCCACTATCGACTACGCGATCATGGCGACCACACCCGTCCTGTGGATCCTCTACGCCGGACGCATCGTGGCCGGCATCACCGGCGCCACAGGTGCGGTTGCTGGCGCCTATATCGCCGACATCACCGATGGGGAAGATCGGGCTC\n>Other.8\nCACCAGTCACGGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGG\n>Other.9\nATGGCATGACAGTAAGAGAATTATGCATTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTG\n>Other.10\nGGAAGATCGGGCTCGCCACTTCGGGCTCATGAGCGCTTGTTTCGGCGTGGGTATGGTGGCAGGCCCCGTGGCCGGGGGACTGTTGGGCGCCATCTCCTTGCATGCACCATTCCTTGCGGCGGCGGTGCTCAACGGCCTCAACCTACTACTG\n>Other.11\nGTGGCAGGCCCCGTGGCCGGGGGACTGTTGGGCGCCATCTCCTTGCATGCACCATTCCTTGCGGCGGCGGTGCTCAACGGCCTCAACCTACTACTGGGCTGCTTCCTAATGCAGGAGTCGCATAAGGGAGAGCGTCGAATGGTGCACTCTC\n>Other.12\nCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTT\n>Other.13\nTACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTC\n>Other.14\nAACCTGCTGCTGTTGCCCGGAACTTACACTTACGAGTGGTCTTTTAGAAAAGACGTTAACATGATTCTCCAAAGCAGCCTGGGCAACGATTTGCGTGTGGACGGGGCCAGCATTAACATCAAAAGCGTAAACCTGTACGCCTCGTTTTTCC\n>Other.15\nGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTG\n>Other.16\nGGTGAGATCACTTATAAACTCGAATCTGGTACTCAGCCTGTTTGTCACTACGTTTATCATCCAGGTGGCGACGGGCTCATTTGCCCCCATTGTGACGCTGTATGTCCGCGAACTGGCGGGTAACGTCAGTAACGTCGCCTTTATAAGTGG\n>Other.17\nCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGATGAGCGTGGGTCTCGCGGTATCATTGCAGCACTTGTGATAGATTGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAAT\n>Other.18\nACACATGGCAAGAAGCCATGGGCGTGTGGCAGCAGTGTCTGGAAGAAAGCAACCTTCGAGAATTAACCAAACTGCTTCGCCGCGCACGCCGCAGCCTTTGGACGGGCTTTTCAGAGCTGTCCGTGGCGCAGGAGCTGTCCAGCATCATCT\n>Other.19\nGCGCGGCGATGATCGGCCTGTCGCTTGCGGTATTCGGAATCTTGCACGCCCTCGCTCAAGCCTTCGTCACTGGTCCCGCCACCAAACGTTTCGGCGAGAAGCAGGCCATTATCGCCGGCATGGCGGCCGACGCGCTGGGCTACGTCTTGCT\n>Other.20\nACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAA\n>Other.21\nATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAAGTGTCAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCT\n>Other.22\nATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGCCCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTG\n>Other.23\nCGACGCGAGGCTGGATGGCCTTCCCCATTATGATTCTTCTCGCTTCCGGCGGCATCGGGATGCCCGCGTTGCAGGCCATGCTGTCCAGGCAGGTAGATGACGACCATCAGGGACAGCTTCAAGGATCGCTCGCGGCTCTTACCAGCCTAAC\n>Other.24\nCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAGGTTTAAATTTTTCTCCGATCACCGTTTCACACAATATCCATGCTGGAACACAGCTTAGCCCCGGAGGATGGG\n>Other.25\nCCGAACATCGGCCTGATCGGCTCGCTGTCGTCGTACGGCCGCGTCAACCCGTTCGGCTTCATCGAGACGCCGTACCGCAAGGTCGACGCCGGCCGCGTGACCGACCAGATCGACTACCTGACCGCGGACGAGGAGGACCGGCACGTCTCGC\n"
}
Raw
heatmap.js
"use strict";
function drawHeatmap(summary, selector) {
var cvgCartoonMap = {
'_': 0,
'.': 0.25,
'o': 0.5,
'O': 1
}
function linspace(start, end, n) {
var out = [];
var delta = (end - start) / (n - 1);
var i = 0;
while(i < (n - 1)) {
out.push(start + (i * delta));
i++;
}
out.push(end);
return out;
}
function getFamilyCoverageData(family) {
var familyCoverageData = [];
[...family.cvg].forEach(function(bit, i) {
familyCoverageData.push({
family: family.family,
bin: i,
cartoonChar: bit
})
});
return familyCoverageData;
}
function getAccessionCoverageData(accession) {
var coverageData = [];
[...accession.cvg].forEach(function(bit, i) {
coverageData.push({
accession: accession.acc,
bin: i,
cartoonChar: bit
})
});
return coverageData;
}
// adapted from https://bl.ocks.org/starcalibre/6cccfa843ed254aa0a0d
function drawLegend() {
var legendWidth = 80,
legendHeight = 200,
margin = {top: 10, right: 60, bottom: 10, left: 2};
var legendSvg = chartSvg.append("svg")
.attr("width", legendWidth)
.attr("height", legendHeight);
var gradient = legendSvg.append('defs')
.append('linearGradient')
.attr('id', 'gradient')
.attr('x1', '0%') // bottom
.attr('y1', '100%')
.attr('x2', '0%') // to top
.attr('y2', '0%')
.attr('spreadMethod', 'pad');
var pct = linspace(0, 100, colorScale.length).map(function(d) {
return Math.round(d) + '%';
});
var colourPct = d3.zip(pct, colorScale);
colourPct.forEach(function(d) {
gradient.append('stop')
.attr('offset', d[0])
.attr('stop-color', d[1])
.attr('stop-opacity', 1);
});
legendSvg.append('rect')
.attr('x1', 0)
.attr('y1', 0)
.attr('width', legendWidth - margin.left - margin.right)
.attr('height', legendHeight - margin.top - margin.bottom)
.style('fill', 'url(#gradient)')
.attr("transform", `translate(1, ${margin.top})`)
.style("stroke", "black")
.style("stroke-width", 1);
// create a scale and axis for the legend
var legendScale = d3.scaleLinear()
.domain([0, 1])
.range([legendHeight - margin.top - margin.bottom, 0]);
var legendAxis = legendSvg.append("g")
.attr("transform", `translate(${legendWidth - margin.left - margin.right}, ${margin.top - 0.5})`)
.call(d3.axisRight(legendScale));
};
function addColumns(gElement, summaryEntry=null) {
var yShift = 15;
var colHeight = sectionHeight;
var colMap = {
"score": {
"name": "Score",
"size": 50,
"domain": [0, 100],
"fill": "#67c286"
},
"pctid": {
"name": "Identity%",
"size": 80,
"domain": [75, 100],
"fill": "#fdb53c"
},
"aln": {
"name": "Reads",
"size": 70,
"domain": [0, 1000],
"fill": "#658fc4"
}
}
var textG = gElement.append("g")
.attr("transform",
`translate(${sectionMargin.left + barWidth + 10}, ${yShift})`);
var prevWidth = 0;
var columns = ["score", "pctid", "aln"];
columns.forEach((column) => {
var colAttrs = colMap[column];
var colWidth = colAttrs["size"];
var colText = summaryEntry ? summaryEntry[column] : colAttrs["name"];
var cellG = textG.append("g");
var text = textG.append("text")
.text(colText)
.style("text-anchor", "middle")
.attr("x", prevWidth + (colWidth / 2));
if (summaryEntry) {
if (colText != null) {
text.style("opacity", 0)
.attr("column", column)
.style("font-size", 12);
var diff = parseInt(colText) - colAttrs["domain"][0];
var diffCapped = Math.min(diff, colAttrs["domain"][1]);
var range = colAttrs["domain"][1] - colAttrs["domain"][0];
var barWidth = colWidth * diffCapped / range;
var colorBar = cellG.append("rect")
.attr("fill", colAttrs["fill"])
.attr("width", barWidth)
.attr("height", colHeight)
.attr("x", prevWidth)
.attr("y", -yShift);
var border = cellG.append("rect")
.attr("fill", "none")
.style("stroke", "black")
.style("stroke-width", 1)
.attr("width", colWidth)
.attr("height", colHeight)
.attr("x", prevWidth)
.attr("y", -yShift);
}
}
else {
var hoverForColumnText = textG.append("rect")
.attr("width", colWidth)
.attr("height", colHeight)
.attr("x", prevWidth)
.attr("y", -yShift)
.style("opacity", 0)
.on("mouseover", () => {
d3.selectAll(`[column="${column}"]`).style("opacity", 1);
})
.on("mouseout", () => {
d3.selectAll(`[column="${column}"]`).style("opacity", 0);
});
}
prevWidth += colWidth;
});
}
function addFamilyText(gElement, family) {
var textGroup = gElement.append("g")
.attr("transform",
`translate(${sectionMargin.left}, ${sectionMargin.top})`);
var link, linkText, linkWidth;
if (family.family == "AMR") {
link = "https://card.mcmaster.ca/";
linkText = "CARD";
linkWidth = 45;
}
else {
link = `https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=${family.family}`;
linkText = "NCBI Taxonomy Browser";
linkWidth = 175;
}
var linkHeight = 20;
var linkSvg = textGroup.append("svg")
.attr("width", linkWidth)
.attr("height", linkHeight)
.attr("x", 20);
var linkRectA = linkSvg
.append("a")
.attr("xlink:href", link)
.attr("target", "_blank")
.append("rect")
.attr("opacity", 0)
.attr("width", linkWidth)
.attr("height", linkHeight);
var linkTextA = linkSvg.append("text")
.style("fill", "blue")
.style("pointer-events", "none")
.text(linkText)
.attr("transform",
`translate(0, ${sectionMargin.top + 14})`);
var accessionsHeaderY = 40;
var textEntry = textGroup.append("text")
.attr("transform",
`translate(0, ${accessionsHeaderY})`)
.text(`Top ${maxAccessions} accessions by cvgpct:`);
}
function addAccessionText(gElement, family, accession) {
var link;
if (family.family == "AMR") {
var genbank_acc = accession.acc.slice(0, accession.acc.lastIndexOf("_"))
link = `https://www.ncbi.nlm.nih.gov/nuccore/${genbank_acc}`;
}
else {
link = `https://www.ncbi.nlm.nih.gov/nuccore/${accession.acc}`;
}
var linkText = "GenBank";
var linkWidth = 200;
var linkHeight = 20;
var textGroup = gElement.append("g")
.attr("transform",
`translate(${sectionMargin.left}, ${sectionMargin.top})`);
var linkSvg = textGroup.append("svg")
.attr("width", linkWidth)
.attr("height", linkHeight)
.attr("x", 20);
var linkRectA = linkSvg
.append("a")
.attr("xlink:href", link)
.attr("target", "_blank")
.append("rect")
.attr("opacity", 0)
.attr("width", linkWidth)
.attr("height", linkHeight);
var linkTextA = linkSvg.append("text")
.style("fill", "blue")
.style("pointer-events", "none")
.text(linkText)
.attr("transform",
`translate(0, ${sectionMargin.top + 14})`);
}
function toggleVisibilityValue(currentValue) {
return (currentValue == "visible" ? "hidden" : "visible");
}
function toggleIRow(allRows, currentRow, subsectionHeight) {
var subsectionG = currentRow.select("g.subsection");
var subsectionVisibility = subsectionG.attr("visibility");
var subSectionVisible = subsectionVisibility == "visible";
var shiftY = subSectionVisible ? -subsectionHeight : subsectionHeight;
var caretRotate = subSectionVisible ? -30 : 60;
var fadeTime = 500;
var shift = false;
allRows.each(function(d, i) {
if (shift) {
var currentY = parseInt(d3.select(this).select("svg").attr("y"));
d3.select(this).select("svg").transition().duration(fadeTime).attr("y", currentY + shiftY);
}
if (d3.select(this).attr("rowid") == currentRow.attr("rowid")) {
shift = true;
subsectionG.attr("visibility", toggleVisibilityValue(subsectionVisibility));
var currentHeight = parseInt(d3.select(this).select("svg").attr("height"));
d3.select(this).select(".click-expand")
.attr("visibility", "hidden");
d3.select(this).select("svg")
.transition().duration(fadeTime)
.attr("height", currentHeight + shiftY);
d3.select(this).select(".expand-caret")
.transition().duration(fadeTime)
.attr("transform", `rotate(${caretRotate})`)
.on("end", () => {
d3.select(this).select(".click-expand")
.attr("visibility", "visible");
});
}
else {
d3.select(this).select(".heatmap-cover")
.transition().duration(fadeTime)
.style("opacity", subSectionVisible ? 0 : 0.4);
var currentClickExpandVisibility = d3.select(this).select(".click-expand")
.attr("visibility");
d3.select(this).select(".click-expand")
.attr("visibility", toggleVisibilityValue(currentClickExpandVisibility));
}
});
}
function toggleFamilyRow(familyName) {
var allRows = d3.selectAll(".family");
var currentRow = d3.select(`.family[rowid="${familyName}"]`);
var subsectionHeight = 300;
toggleIRow(allRows, currentRow, subsectionHeight);
}
function shiftLowerFamilies(familyName, shiftY) {
var fadeTime = 500;
var shift = false;
d3.selectAll(".family").each(function(d, i) {
if (shift) {
var currentY = parseInt(d3.select(this).select("svg").attr("y"));
d3.select(this).select("svg").transition().duration(fadeTime).attr("y", currentY + shiftY);
}
if (d3.select(this).attr("rowid") == familyName) {
shift = true;
var currentHeight = parseInt(d3.select(this).select("svg").attr("height"));
d3.select(this).select("svg").transition().duration(fadeTime).attr("height", currentHeight + shiftY);
}
});
}
function toggleAccessionRow(familyName, accessionName) {
var allRows = d3.selectAll(".accession");
var currentRow = d3.select(`.accession[rowid="${accessionName}"]`);
var subsectionVisibility = currentRow.select("g.subsection").attr("visibility");
var subSectionVisible = subsectionVisibility == "visible";
var subsectionHeight = 100;
var shiftY = subSectionVisible ? -subsectionHeight : subsectionHeight;
toggleIRow(allRows, currentRow, subsectionHeight);
shiftLowerFamilies(familyName, shiftY);
}
function drawExpandableRow(gElement, name, dataBin, heatSquareData, rowIndex) {
var rowType = dataBin;
y = rowIndex * sectionHeight;
var entrySvg = gElement.append("svg")
.attr("y", y)
.attr("width", sectionWidth)
.attr("height", sectionHeight)
.attr("border", barBorder.size)
.style("display", "block")
var entryG = entrySvg.append("g")
.attr("transform",
`translate(${sectionMargin.left}, ${sectionMargin.top})`);
var x = d3.scaleBand()
.range([ 0, barWidth ])
.domain(genomeBins)
.padding(0.01);
var y = d3.scaleBand()
.range([ 0, barHeight ])
.domain([name])
.padding(0.01);
var yAxis = entryG.append("g")
.call(d3.axisLeft(y));
yAxis.select("path").remove();
yAxis.select("line").remove();
yAxis.selectAll("text")
.attr("x", -25)
.style("font-size", 12);
var caret = yAxis.append("g")
.attr("transform", `translate(-12, 9)`)
.append("path")
.attr("class", "expand-caret")
.attr("d", d3.symbol().type(d3.symbolTriangle))
.attr('fill', 'black')
.attr("transform", "rotate(-30)");
var heatBar = entryG.append("g")
.attr("class", "heatbar");
var heatSquares = heatBar.selectAll()
.data(heatSquareData)
.enter()
.append("rect")
.attr("x", d => x(d.bin) )
.attr("y", d => y(d[dataBin]) )
.attr("width", x.bandwidth() )
.attr("height", y.bandwidth() )
.style("fill", d => colorMap(cvgCartoonMap[d.cartoonChar]) )
var barBorderPath = entryG
.append("rect")
.attr("width", barWidth)
.attr("height", barHeight)
.style("fill", "none")
.style("stroke", barBorder.color)
.style("stroke-width", barBorder.size);
var heatmapCover = entryG
.append("rect")
.attr("width", barWidth)
.attr("height", barHeight)
.attr("class", "heatmap-cover")
.style("opacity", 0)
.style("fill", "#000");
var clickExpandRect = entrySvg.append("rect")
.attr("class", "click-expand")
.attr("visibility", "visible")
.attr("width", sectionWidth)
.attr("height", sectionHeight)
.style("stroke", barBorder.color)
.style("opacity", 0)
.style("stroke-width", barBorder.size)
.style('cursor', 'pointer').on("click", function() {
if (rowType == "family") {
toggleFamilyRow(name);
}
else {
var familyName = gElement.attr("family");
toggleAccessionRow(familyName, name);
}
});
var subsection = entrySvg
.append("g")
.attr("class", "subsection")
.attr("visibility", "hidden")
.attr("transform",
`translate(0, ${sectionMargin.top + barHeight})`);
return subsection
}
var sectionMargin = {top: 2, right: 300, bottom: 2, left: 200};
var sectionWidth = 750;
var sectionHeight = 20;
var barWidth = sectionWidth - sectionMargin.left - sectionMargin.right;
var barHeight = sectionHeight - sectionMargin.top - sectionMargin.bottom;
var barBorder = {size: 1, color: '#999'};
var colorMap = d3.scaleSequential(d3.interpolateYlOrRd)
.domain([0, 1]);
var colorScale = Object.values(cvgCartoonMap).map((value) => colorMap(value));
var cvgLength = summary["families"][0]["cvg"].length;
var genomeBins = [...Array(cvgLength).keys()];
var chartSvg = d3.select(selector)
.append("svg")
.attr("viewBox", `0 0 750 660`);
var familiesSvg = chartSvg.append("svg")
.attr("y", 20);
drawLegend();
addColumns(chartSvg);
var familyTextHeight = 50;
var accessionsByFamily = d3.nest()
.key(d => d.fam)
.entries(summary["accessions"])
.reduce(function(obj, x) {
obj[x["key"]] = x["values"]
return obj;
}, {});
var maxAccessions = 10;
summary["families"].forEach((family, i) => {
var familyCoverageData = getFamilyCoverageData(family);
var familyG = familiesSvg.append("g")
.attr("class", "family")
.attr("rowid", `${family.family}`);
var familySubGroup = drawExpandableRow(familyG, family.family, "family", familyCoverageData, i);
addColumns(familyG.select("svg"), family);
addFamilyText(familySubGroup, family);
var familyAccessionsG = familySubGroup.append("g")
.attr("class", "family-accessions")
.attr("transform", `translate(0, ${familyTextHeight})`)
var accessions = accessionsByFamily[family.family]
.sort((a, b) => parseFloat(a.cvgpct) < parseFloat(b.cvgpct));
if (accessions.length > maxAccessions) {
accessions = accessions.slice(0, maxAccessions);
}
accessions.forEach((accession, i) => {
var accessionCoverageData = getAccessionCoverageData(accession);
var accessionG = familyAccessionsG.append("g")
.attr("class", "accession")
.attr("rowid", `${accession.acc}`)
.attr("family", `${family.family}`);
var accessionSubGroup = drawExpandableRow(
accessionG, accession.acc, "accession",
accessionCoverageData, i);
addColumns(accessionG.select("svg"), accession);
addAccessionText(accessionSubGroup, family, accession);
});
});
}
Raw
index.html
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>D3 Heatmap</title>
<script src="https://d3js.org/d3.v5.js"></script>
<script src="https://d3js.org/d3-scale-chromatic.v0.3.min.js"></script>
<script src="heatmap.js" type="text/javascript"></script>
<link rel="stylesheet" href="style.css">
</head>
<body>
<div id="summaryHeatmap"></div>
<script>
async function draw() {
var summary = await d3.json("accession_summary.json");
drawHeatmap(summary, "#summaryHeatmap");
}
draw();
</script>
</body>
</html>
Raw
style.css
html {
font-family: system-ui,-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Helvetica Neue",Arial,"Noto Sans",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";
}
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