vilterp

URL: http://localdocker:8080/workflow/run?id=f2db41e1fa331b3e
File '/galaxy/galaxy-python/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', line 364 in respond
  app_iter = self.application(environ, detect_start_response)
File '/galaxy/galaxy-python/eggs/Paste-1.6-py2.7.egg/paste/debug/prints.py', line 98 in __call__
  environ, self.app)
File '/galaxy/galaxy-python/eggs/Paste-1.6-py2.7.egg/paste/wsgilib.py', line 539 in intercept_output
  app_iter = application(environ, replacement_start_response)
File '/galaxy/galaxy-python/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', line 80 in __call__
  return self.application(environ, start_response)
File '/galaxy/galaxy-python/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', line 632 in __call__

vilterp

docker run -d --name db -v /external/pg_data:/var/lib/postgresql/data postgres
docker run -d -p 80:8080 --name galaxy --link db:db_1 -v /external/tool_deps:/galaxy/compiled_tool_dependencies -v /external/galaxy_database:/galaxy/galaxy-python/database -v /external/shed_tools:/galaxy/shed_tools vilterp/galaxy-es-postgres

vilterp

# the dream
web:
  build: .
  links:
    - db
  volumes:
    - /external/galaxy_data:/galaxy/galaxy-python/database
    - /external/compiled_tool_dependencies:/galaxy/compiled_tool_dependencies
    - /external/tools:/galaxy/shed_tools
  ports:

vilterp

# -*- mode: ruby -*-
# vi: set ft=ruby :

# Vagrantfile API/syntax version. Don't touch unless you know what you're doing!
VAGRANTFILE_API_VERSION = "2"

Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
  # All Vagrant configuration is done here. The most common configuration
  # options are documented and commented below. For a complete reference,
  # please see the online documentation at vagrantup.com.

vilterp

import netCDF4 as nc

def ncdump(path):
    ds = nc.Dataset(path)
    def dim_repr(dim):
        return ['\t{0} = {1} ; {2}'.format(dim._name, 'UNLIMITED' if dim.isunlimited() else len(dim),
                                           '// {0} currently'.format(len(dim)) if dim.isunlimited() else '')]
    def var_repr(var):
        header = '\t{0} {1}({2}) ;'.format(var.dtype, var._name, ', '.join(var.dimensions))
        attrs = ['\t\t{0}:{1} = "{2}" ;'.format(var._name, attr, var.getncattr(attr)) for attr in var.ncattrs()]

vilterp

module Sierpinski where

import Diagrams.Core exposing (..)
import Diagrams.Align exposing (..)
import Diagrams.FillStroke exposing (..)
import Diagrams.FullWindow exposing (..)
import Color

sierpinski n sl = case n of
                    0 -> eqTriangle sl (justSolidFill Color.blue)

vilterp

[2015-02-23 22:22:57]   INFO lt-chitcpd chitcpd running. UNIX socket: /tmp/chitcpd.socket.vilterp. TCP socket: 8745
[2015-02-23 22:22:57]  DEBUG lt-chitcpd Waiting for chiTCP daemon to stop.
[2015-02-23 22:22:59]  TRACE handler-0 Received request (code=SOCKET)
[2015-02-23 22:22:59]  TRACE handler-1 Received request (code=SOCKET)
[2015-02-23 22:22:59]  TRACE handler-0 >>> Entering handler for CHITCPD_MSG_CODE__SOCKET
[2015-02-23 22:22:59]  TRACE handler-1 >>> Entering handler for CHITCPD_MSG_CODE__SOCKET
[2015-02-23 22:22:59]  DEBUG handler-0 Assigned socket 0
[2015-02-23 22:22:59]  DEBUG handler-1 Assigned socket 1
[2015-02-23 22:22:59]  TRACE handler-0 <<< Exiting handler for CHITCPD_MSG_CODE__SOCKET
[2015-02-23 22:22:59]  TRACE handler-1 <<< Exiting handler for CHITCPD_MSG_CODE__SOCKET

vilterp

Converting the Reactor frontend to Elm

As summarized in the reactor issue "WIP: convert JS to Elm", moving as much of the frontend of elm-reactor from JS to Elm as possible would have significant code quality benefits.

Step 1: Move View Code to Elm

As listed in the issue:

• Use sliders from elm-html, not a custom native library
• Move logic for toggling the sidebar and event blocker into Elm

vilterp

To get this, $ elm-make frontend/Debugger.elm in this code tree.

The type annotation for `start` does not match its definition.

92|>        App model error action
93|>     -> Signal action
94|>     -> (Signal Html, Signal (T.Task error ()))

Could not unify user provided type variable `error`. The most likely cases are:

vilterp

A problem that comes up periodically is that people want to know the position of Html elements on the page after they've been laid out, for example so they can:

1. Absolutely position an element based on the position of one or more relatively-positioned elements. E.g:
   1. make a popup seem to "come out of" a certain element (this could be done by adding a child of the div which is positioned relative to it, but is easier if you can just get the laid-out coordinates of the div and position the popup relative to that)
   2. draw a circle around an element, to highlight it (e.g. for a first-time app walkthrough tutorial). Again, maybe possible to do with purely relative layout, but much easier if you can get element position.
   3. draw a line between two page elements
2. know whether an element is visible, given the current scroll window
3. get mouse events on an element which are relative to that element's top-left origin (e.g. for a mouse-interactive Graphics.Collage embedded in HTML)

Elm-html cannot t