vivek-bala/extasy_coco_amber_archer

## extasy_coco_amber_archer
cat extasy.log
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] radical.pilot version: 0.20 (v0.20-167-g0a3a8ec@(detached)
2014:10:15 09:43:18 24873  MainThread   saga                  : [INFO    ] saga-python     version: 0.20
2014:10:15 09:43:18 24873  MainThread   radical.utils         : [DEBUG   ] lm new manager
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.context.myproxy
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.context.myproxy for saga.Context API with URL scheme(s) ['myproxy://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.context.x509
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.context.x509 for saga.Context API with URL scheme(s) ['x509://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.context.ssh
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.context.ssh for saga.Context API with URL scheme(s) ['ssh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.context.userpass
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.context.userpass for saga.Context API with URL scheme(s) ['userpass://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.shell.shell_job
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Service API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Job API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.shell.shell_file
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Entry API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.File API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.shell.shell_resource
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [WARNING ] Skipping adaptor saga.adaptors.shell.shell_resource: beta versions are disabled (v0.1.beta)
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.redis.redis_advert
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [WARNING ] Skipping adaptor saga.adaptors.redis.redis_advert 1: module loading failed: No module named redis
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.sge.sgejob
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Service API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Job API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.pbs.pbsjob
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Service API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Job API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.lsf.lsfjob
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Service API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Job API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.condor.condorjob
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Service API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Job API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.slurm.slurm_job
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Service API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Job API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.http.http_file
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.http.http_file for saga.namespace.Entry API with URL scheme(s) ['http://', 'https://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.http.http_file for saga.filesystem.File API with URL scheme(s) ['http://', 'https://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.aws.ec2_resource
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.aws.ec2_resource for saga.Context API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Manager API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Compute API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.loadl.loadljob
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Service API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Job API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Loading  adaptor saga.adaptors.globus_online.go_file
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Directory API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Entry API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.Directory API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://']
2014:10:15 09:43:18 24873  MainThread   saga.Engine           : [INFO    ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.File API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://']
2014:10:15 09:43:18 24873  MainThread   saga.saga.adaptor.ssh : [INFO    ] default ssh key at /home/vivek/.ssh/id_rsa
2014:10:15 09:43:18 24873  MainThread   saga.saga.adaptor.ssh : [INFO    ] ignore ssh key at /home/vivek/.ssh/known_hosts (no public key: /home/vivek/.ssh/known_hosts.pub)
2014:10:15 09:43:18 24873  MainThread   saga.ContextSSH       : [INFO    ] init SSH context for key  at '/home/vivek/.ssh/id_rsa' done
2014:10:15 09:43:18 24873  MainThread   saga.DefaultSession   : [DEBUG   ] default context [saga.adaptor.ssh    ] : {'LifeTime' : '-1', 'Type' : 'ssh', 'UserCert' : '/home/vivek/.ssh/id_rsa.pub', 'UserKey' : '/home/vivek/.ssh/id_rsa'}
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] using database url  mongodb://ec2-184-72-89-141.compute-1.amazonaws.com:27017/
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] using database name radicalpilot
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for local.localhost
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for ncar.yellowstone
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for radical.tutorial
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for lrz.supermuc
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for das4.fs2
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for epsrc.archer
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for xsede.stampede
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for xsede.trestles
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for xsede.gordon
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for xsede.blacklight
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for xsede.lonestar
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for iu.bigred2
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for iu.quarry
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for rice.davinci
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for futuregrid.sierra
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for futuregrid.alamo
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for futuregrid.hotel
2014:10:15 09:43:18 radical.pilot.MainProcess: [INFO    ] Loaded resource configurations for futuregrid.india
2014:10:15 09:43:19 radical.pilot.MainProcess: [INFO    ] New Session created{'uid': '543e79f62330e06129d5cac8', 'created': datetime.datetime(2014, 10, 15, 13, 43, 18, 859752), 'database_auth': ':', 'database_name': 'radicalpilot', 'database_url': 'mongodb://ec2-184-72-89-141.compute-1.amazonaws.com:27017/radicalpilot', 'last_reconnect': None}.
2014:10:15 09:43:19 radical.pilot.MainProcess: [DEBUG   ] Worker thread (ID: Thread-1[140537622558464]) for PilotManager 543e79f72330e06129d5cac9 started.
2014:10:15 09:43:19 radical.pilot.MainProcess: [WARNING ] using alias 'epsrc.archer' for deprecated resource key 'archer.ac.uk'
2014:10:15 09:43:19 radical.pilot.MainProcess: [DEBUG   ] saga.utils.PTYShell ('sftp://login.archer.ac.uk/')
2014:10:15 09:43:19 radical.pilot.MainProcess: [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd178740810>
2014:10:15 09:43:19 radical.pilot.MainProcess: [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:19 radical.pilot.MainProcess: [DEBUG   ] open master pty for [ssh] [vb224@login.archer.ac.uk] vb224: /usr/bin/env TERM=vt100  "/usr/bin/ssh"   -t -o IdentityFile=/home/vivek/.ssh/id_rsa   -o ControlMaster=yes -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no  -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2   vb224@login.archer.ac.uk'
2014:10:15 09:43:19 radical.pilot.MainProcess: [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd178740bd0>
2014:10:15 09:43:19 radical.pilot.MainProcess: [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=yes -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vb224@login.archer.ac.uk
2014:10:15 09:43:19 radical.pilot.MainProcess: [DEBUG   ] write: [    5] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:19 radical.pilot.MainProcess: [DEBUG   ] Connected to MongoDB. Serving requests for PilotManager 543e79f72330e06129d5cac9.
2014:10:15 09:43:20 radical.pilot.MainProcess: [DEBUG   ] read : [    5] [  730] (------------------------------ ... --------------------------\n\n)
2014:10:15 09:43:20 radical.pilot.MainProcess: [DEBUG   ] write: [    5] [   51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2014:10:15 09:43:20 radical.pilot.MainProcess: [DEBUG   ] write: [    5] [   28] ( printf 'HELLO_%d_SAGA\n' 1\n)
2014:10:15 09:43:20 radical.pilot.MainProcess: [DEBUG   ] read : [    5] [   77] (Last login: Tue Oct 14 23:45:37 2014 from nat-alex-resnet-out-6.rutgers.edu\n)
2014:10:15 09:43:20 radical.pilot.MainProcess: [DEBUG   ] read : [    5] [  514] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIf you are not authorised to use this account then you must logout immediately.\n\n================================================================================\n)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] read : [    5] [   37] (vb224@eslogin007:~> $$HELLO_1_SAGA\n$)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] got shell prompt trigger (4) (--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.

If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------

Last login: Tue Oct 14 23:45:37 2014 from nat-alex-resnet-out-6.rutgers.edu
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $$HELLO_1_SAGA)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] got initial shell prompt (5) (
$)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] Got initial shell prompt (5) (
$)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd178740e50>
2014:10:15 09:43:21 radical.pilot.MainProcess: [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vb224@login.archer.ac.uk
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] write: [    6] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] read : [    6] [  588] (Last login: Wed Oct 15 14:43:20 2014 from ool-43571463.dyn.optonline.net\n================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIf you are not authorised to use this account then you must logout immediately.\n\n================================================================================\n)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] read : [    6] [   21] (vb224@eslogin007:~> $)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] got initial shell prompt (5) (Last login: Wed Oct 15 14:43:20 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] Got initial shell prompt (5) (Last login: Wed Oct 15 14:43:20 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] write: [    6] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] read : [    6] [   14] (eslogin007:~> )
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] write: [    6] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] read : [    6] [   10] (PROMPT-0->)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] got new shell prompt
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] run_sync: echo "WORKDIR: /work/`id -gn`/`id -gn`/$USER"
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] write: [    6] [   46] (echo "WORKDIR: /work/`id -gn`/`id -gn`/$USER"\n)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] read : [    6] [   42] (WORKDIR: /work/e290/e290/vb224\nPROMPT-0->)
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] Determined remote working directory for sftp://login.archer.ac.uk/: '/work/e290/e290/vb224'
2014:10:15 09:43:21 radical.pilot.MainProcess: [DEBUG   ] PTYShell del  <saga.utils.pty_shell.PTYShell object at 0x7fd178740810>
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Launching ComputePilot {u'state': u'PendingLaunch', u'commands': [], u'description': {u'project': u'e290', u'resource': u'archer.ac.uk', u'queue': u'debug', u'sandbox': None, u'cleanup': None, u'pilot_agent_priv': None, u'access_schema': None, u'memory': None, u'cores': 24, u'runtime': 10}, u'sagajobid': None, u'started': None, u'cores_per_node': None, u'output_transfer_started': None, u'finished': None, u'submitted': datetime.datetime(2014, 10, 15, 13, 43, 21, 951000), u'output_transfer_finished': None, u'sandbox': u'sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/', u'pilotmanager': u'543e79f72330e06129d5cac9', u'unitmanager': None, u'heartbeat': None, u'statehistory': [{u'timestamp': datetime.datetime(2014, 10, 15, 13, 43, 21, 949000), u'state': u'PendingLaunch'}], u'input_transfer_started': None, u'_id': ObjectId('543e79f72330e06129d5caca'), u'input_transfer_finished': None, u'nodes': None, u'log': []}
2014:10:15 09:43:22 radical.pilot.MainProcess: [WARNING ] using alias 'epsrc.archer' for deprecated resource key 'archer.ac.uk'
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Using pilot agent /home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Using bootstrapper /home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Creating agent sandbox 'sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/')
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm check   pool ([])
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm create  pool   for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (<type 'str'>) (<radical.utils.lease_manager.LeaseManager object at 0x7fd178ce3690>)
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (0)
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm create  object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd178652ed0>
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd178816ed0>
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vb224@login.archer.ac.uk
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd178740e50>
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Starting InputFileTransferWorker
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Starting InputFileTransferWorker
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Worker thread (ID: Thread-3[140537235502848]) for UnitManager 543e79fa2330e06129d5cacb started.
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Loaded scheduler: DirectSubmissionScheduler.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Connected to MongoDB. Serving requests for UnitManager 543e79fa2330e06129d5cacb.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Connected to MongoDB. Serving requests for UnitManager 543e79fa2330e06129d5cacb.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Connected to MongoDB. Serving requests for UnitManager 543e79fa2330e06129d5cacb.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Connected to MongoDB. Serving requests for UnitManager 543e79fa2330e06129d5cacb.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [  588] (Last login: Wed Oct 15 14:43:21 2014 from ool-43571463.dyn.optonline.net\n================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIf you are not authorised to use this account then you must logout immediately.\n\n================================================================================\n)
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_0.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_0.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_1.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_1.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_2.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_2.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_3.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_3.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_4.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_4.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_5.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_5.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_6.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_6.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.crd > min0.crd' into dict '{'action': 'Transfer', 'source': './penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min0.crd', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './min.in' into dict '{'action': 'Transfer', 'source': './min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string './mdshort.in' into dict '{'action': 'Transfer', 'source': './mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'mdshort.in', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md0.ncdf > md_0_7.ncdf' into dict '{'action': 'Transfer', 'source': 'md0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_7.ncdf', 'priority': 0}'
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] ComputePilot '543e79f72330e06129d5caca' state changed from 'PendingLaunch' to 'Launching'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacc' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   20] (vb224@eslogin007:~> )
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] got initial shell prompt (5) (Last login: Wed Oct 15 14:43:21 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> )
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] Got initial shell prompt (5) (Last login: Wed Oct 15 14:43:21 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> )
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [    1] ($)
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cace' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad3' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad1' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacf' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   14] (eslogin007:~> )
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] got new shell prompt
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.0s
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: True -- new!
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd /work/e290/e290/vb224/radical.pilot.sandbox &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca' ;  cd '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  220] (cd /work/e290/e290/vb224/radical.pilot.sandbox &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca' ;  cd '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca'\n)
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacd' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad2' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad0' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    0.1s
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] initialized directory (0)()
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd17863c510>
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] open master pty for [sh] [localhost] vivek: /usr/bin/env TERM=vt100  "/bin/bash"  -i'
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17863c150>
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   13] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   13] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17863c2d0>
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:22 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc')
2014:10:15 09:43:22 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell'])
2014:10:15 09:43:22 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (1)
2014:10:15 09:43:22 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:22 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:22 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  test -d  '/' && cd '/'
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [   32] (cd / &&  test -d  '/' && cd '/'\n)
2014:10:15 09:43:22 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace.
2014:10:15 09:43:22 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace')
2014:10:15 09:43:22 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell'])
2014:10:15 09:43:22 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (1)
2014:10:15 09:43:22 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm create  object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:22 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1742e0350>
2014:10:15 09:43:22 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [    1] ($)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17863c810>
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)2014:10:15 09:43:23 radical.pilot.MainProcess: [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vb224@login.archer.ac.uk

2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [   11] ($PROMPT-0->)
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] got new shell prompt
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [   10] (PROMPT-0->)
2014:10:15 09:43:23 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacc' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:23 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cace' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYShell del  <saga.utils.pty_shell.PTYShell object at 0x7fd17863c510>
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd17863c2d0>
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] Copying bootstrapper 'file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh' to agent sandbox (sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/).
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh
2014:10:15 09:43:23 radical.pilot.MainProcess: [INFO    ] Scheduled ComputeUnits [] for execution on ComputePilot '543e79f72330e06129d5caca'.
2014:10:15 09:43:23 radical.pilot.MainProcess: [INFO    ] 0 units remain unscheduled
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   74] (Last login: Wed Oct 15 14:43:22 2014 from ool-43571463.dyn.optonline.net\n)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [  349] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\n)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [  165] (If you are not authorised to use this account then you must logout immediately.\n\n================================================================================\n)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   21] (vb224@eslogin007:~> $)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] got initial shell prompt (5) (Last login: Wed Oct 15 14:43:22 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] Got initial shell prompt (5) (Last login: Wed Oct 15 14:43:22 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:23 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   14] (eslogin007:~> )
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   10] (PROMPT-0->)
2014:10:15 09:43:23 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] got new shell prompt
2014:10:15 09:43:23 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0001 was unused for    0.0s
2014:10:15 09:43:23 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: True -- new!
2014:10:15 09:43:23 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  test -d  '/' && cd '/'
2014:10:15 09:43:23 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [   32] (cd / &&  test -d  '/' && cd '/'\n)
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.0s
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] initialized directory (0)()
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd178685c10>2014:10:15 09:43:23 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell'])

2014:10:15 09:43:23 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm create  pool   for file://localhost/shell_file_adaptor_command_shell (<type 'str'>) (<radical.utils.lease_manager.LeaseManager object at 0x7fd178ce3690>)
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (0)2014:10:15 09:43:23 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm create  object for file://localhost/shell_file_adaptor_command_shell

2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd17427a610>
2014:10:15 09:43:23 24873  PilotLauncherWorker-1 saga.ShellFile        : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd178685ed0>
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:23 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd178685bd0>
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [    1] ($)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [   11] ($PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   14] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   14] [   10] (PROMPT-0->)
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [    1] ($)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [    1] ($)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.0s
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: True -- new!
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh'
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [  114] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh'\n)2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (2)

2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)

2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()

2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc'2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0001 was leased for    0.1s

2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] initialized directory (0)()
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc'\n)2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1742e06d0>

2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm create  pool   for fork://localhost/shell_file_adaptor_command_shell (<type 'str'>) (<radical.utils.lease_manager.LeaseManager object at 0x7fd178ce3690>)2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$

2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (0)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm create  object for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd17427aa10>
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17427aa50>
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   17] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   17] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   17] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17427ac90>
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   17] [    1] ($)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   17] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   17] [   11] ($PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   17] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   17] [   10] (PROMPT-0->)
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   18] [    1] ($)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   18] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   18] [    1] ($)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.0s
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: True -- new!
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (2)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace'2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell

2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace'\n)2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    0.1s

2014:10:15 09:43:24 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cacc
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (2)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.0s
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5110>
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc/min0.crd
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (1)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm create  object for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1742a55d0>
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5650>
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [    1] ($)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [    1] ($)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.0s
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: True -- new!
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (1)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm create  object for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1742a5690>
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a59d0>
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   21] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   21] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   21] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   21] [    1] ($)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   21] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   21] [    1] ($)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   21] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   21] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   21] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.0s
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: True -- new!
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0001 was leased for    0.2s
2014:10:15 09:43:24 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cace2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])

2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (2)
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.0s
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5d90>
2014:10:15 09:43:24 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc/min0.crd
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace/min0.crd
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (2)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm create  object for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1742a7190>
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5490>
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   23] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   23] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   23] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   23] [    1] ($)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   23] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   23] [   11] ($PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   23] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   23] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0006 was unused for    0.0s
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7150> use: True -- new!
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   23] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   23] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (2)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm create  object for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1742a7490>
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a7410>
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [INFO    ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   24] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   24] [   52] (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/coam-on-stampede$ )
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   24] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   24] [    1] ($)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   24] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   24] [    1] ($)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   24] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] got new shell prompt
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: cd /home/vivek/coam-on-stampede
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   24] [   32] (cd /home/vivek/coam-on-stampede\n)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   24] [   10] (PROMPT-0->)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0007 was unused for    0.0s
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7510> use: True -- new!
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (2)
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm create  object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1742a7950>
2014:10:15 09:43:24 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a79d0>
2014:10:15 09:43:24 radical.pilot.MainProcess: [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vb224@login.archer.ac.uk
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] write: [   25] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:24 radical.pilot.MainProcess: [DEBUG   ] read : [   25] [  588] (Last login: Wed Oct 15 14:43:23 2014 from ool-43571463.dyn.optonline.net\n================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIf you are not authorised to use this account then you must logout immediately.\n\n================================================================================\n)
2014:10:15 09:43:24 24873  PilotLauncherWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (default_bootstrapper.sh                         0%    0     0.0KB/s   --:-- ETAdefault_bootstrapper.sh                       100%   14KB  14.3KB/s   00:00    \n)
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   22] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] read : [   25] [   21] (vb224@eslogin007:~> $)
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] got initial shell prompt (5) (Last login: Wed Oct 15 14:43:23 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] Got initial shell prompt (5) (Last login: Wed Oct 15 14:43:23 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:25 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] write: [   25] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5110>
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5d90>
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] read : [   25] [   14] (eslogin007:~> )
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] write: [   25] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] read : [   25] [   10] (PROMPT-0->)
2014:10:15 09:43:25 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] got new shell prompt
2014:10:15 09:43:25 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0008 was unused for    0.0s
2014:10:15 09:43:25 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7910> use: True -- new!
2014:10:15 09:43:25 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a7990>
2014:10:15 09:43:25 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace/min0.crd2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.4s

2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.2s
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.5s
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.3s
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.4s
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] Copying agent 'file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py' to agent sandbox (sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/).2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell

2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.2s
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.0s
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py'
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [  116] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py'\n)
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.0s
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.0s
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17425ab10>
2014:10:15 09:43:25 24873  PilotLauncherWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/radical-pilot-agent.py
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc/penta.top
2014:10:15 09:43:25 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0350>
2014:10:15 09:43:25 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc/penta.top
2014:10:15 09:43:26 24873  PilotLauncherWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   22] [   79] (radical-pilot-agent-multicore.py                0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:43:26 24873  PilotLauncherWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   22] [   81] (radical-pilot-agent-multicore.py              100%  101KB 101.3KB/s   00:00    \n)
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:26 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a7990>
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7910> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0008 was leased for    1.4s
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7150> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0006 was leased for    2.5s
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7510> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:26 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0007 was leased for    2.4s
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace/penta.top
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7150> use: ok!
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0006 was unused for    0.1s
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   23] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   23] [   10] (PROMPT-0->)
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7510> use: ok!
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0007 was unused for    0.1s
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7910> use: ok!
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0008 was unused for    0.1s
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0890>
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace/penta.top
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd17425ab10>
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0350>

2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.5s
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.4s
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.5s
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.4s
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.5s
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] saga.job.Service ('pbs+ssh://login.archer.ac.uk/')

2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.4s
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd17425af50>
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 saga.PTYShell         : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17425a850>
2014:10:15 09:43:27 radical.pilot.MainProcess: [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vb224@login.archer.ac.uk
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc/min.in
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0350>
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc/min.in
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [  588] (Last login: Wed Oct 15 14:43:25 2014 from ool-43571463.dyn.optonline.net\n================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIf you are not authorised to use this account then you must logout immediately.\n\n================================================================================\n)
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   21] (vb224@eslogin007:~> $)
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] got initial shell prompt (5) (Last login: Wed Oct 15 14:43:25 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] Got initial shell prompt (5) (Last login: Wed Oct 15 14:43:25 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:43:27 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:43:27 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   14] (eslogin007:~> )
2014:10:15 09:43:27 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:43:27 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] got new shell prompt
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which qdel
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   11] (which qdel\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   45] (/opt/pbs/12.1.400.132424/bin/qdel\nPROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which qsub
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   11] (which qsub\n)
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0890>
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7910> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0008 was leased for    1.2s2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0350>

2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7150> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0006 was leased for    1.2s
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.1s
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a7510> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0007 was leased for    1.2s
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.1s
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.1s
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace/min.in
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc/mdshort.in

2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!

2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)

2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()

2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    1.3s
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'

2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)

2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])

2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()

2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0dd0>
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:28 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace/min.in2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)

2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    1.3s
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    1.3s
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0590>
2014:10:15 09:43:28 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc/mdshort.in
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   35] (/opt/pbs/12.1.400.132424/bin/qsub\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: qsub --version
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   15] (qsub --version\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   48] (pbs_version = PBSPro_12.1.400.132424\nPROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which pbsnodes
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   15] (which pbsnodes\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   39] (/opt/pbs/12.1.400.132424/bin/pbsnodes\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: pbsnodes --version
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   19] (pbsnodes --version\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   38] (pbs_version = PBSPro_12.1.400.132424\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which qstat
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   12] (which qstat\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   36] (/opt/pbs/12.1.400.132424/bin/qstat\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: qstat --version
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   16] (qstat --version\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   38] (pbs_version = PBSPro_12.1.400.132424\n)
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Found PBS tools: {'qdel': {'path': '/opt/pbs/12.1.400.132424/bin/qdel', 'version': '?'}, 'qsub': {'path': '/opt/pbs/12.1.400.132424/bin/qsub', 'version': 'pbs_version = PBSPro_12.1.400.132424\n'}, 'pbsnodes': {'path': '/opt/pbs/12.1.400.132424/bin/pbsnodes', 'version': 'pbs_version = PBSPro_12.1.400.132424\n'}, 'qstat': {'path': '/opt/pbs/12.1.400.132424/bin/qstat', 'version': 'pbs_version = PBSPro_12.1.400.132424\n'}}
2014:10:15 09:43:28 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which aprun
2014:10:15 09:43:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   12] (which aprun\n)
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   67] (/opt/cray/eslogin/eswrap/1.1.0-1.010400.915.0/bin/aprun\nPROMPT-0->)
2014:10:15 09:43:29 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Host 'login.archer.ac.uk' seems to be a Cray XT class machine.
2014:10:15 09:43:29 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/pbsnodes -a | grep -E "resources_available.ncpus"
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   99] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/pbsnodes -a | grep -E "resources_available.ncpus"\n)
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0590>
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0dd0>

2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    0.9s
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.0s
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.0s
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.0s
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    0.9s
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.0s
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace/mdshort.in
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5b50>
2014:10:15 09:43:29 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace/mdshort.in
2014:10:15 09:43:29 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacc' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:43:29 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3.
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3')
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.2s
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3'
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3'\n)
2014:10:15 09:43:29 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad3' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   10] (PROMPT-0->)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    0.2s
2014:10:15 09:43:29 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cad3
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3/min0.crd
2014:10:15 09:43:29 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.4s
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.4s
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.0s
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd6d0>
2014:10:15 09:43:29 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3/min0.crd
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5b50>
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.0s
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.0s
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.0s
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:30 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1.
2014:10:15 09:43:30 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1')
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1'
2014:10:15 09:43:30 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1'\n)
2014:10:15 09:43:30 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad1' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:30 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.1s
2014:10:15 09:43:30 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cad1
2014:10:15 09:43:30 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1/min0.crd
2014:10:15 09:43:30 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.3s
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.3s
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.0s
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fde50>
2014:10:15 09:43:30 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1/min0.crd
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd6d0>
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.0s
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.0s
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.0s
2014:10:15 09:43:30 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3/penta.top
2014:10:15 09:43:30 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203650>
2014:10:15 09:43:30 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3/penta.top
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fde50>
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.1s
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.1s
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.1s
2014:10:15 09:43:31 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1/penta.top
2014:10:15 09:43:31 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.2s
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.2s
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd350>
2014:10:15 09:43:31 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1/penta.top
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203650>
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.2s
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.2s
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:31 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.2s
2014:10:15 09:43:32 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3/min.in
2014:10:15 09:43:32 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdf50>
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3/min.in
2014:10:15 09:43:32 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:32 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd350>
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.2s
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.2s
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.2s
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdf50>
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.1s
2014:10:15 09:43:33 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1/min.in
2014:10:15 09:43:33 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742036d0>
2014:10:15 09:43:33 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1/min.in
2014:10:15 09:43:33 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3/mdshort.in
2014:10:15 09:43:33 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203990>
2014:10:15 09:43:33 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3/mdshort.in
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742036d0>
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.3s
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.3s
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.3s
2014:10:15 09:43:34 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1/mdshort.in
2014:10:15 09:43:34 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17420b050>
2014:10:15 09:43:34 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1/mdshort.in
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203990>
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.3s
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.3s
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.3s
2014:10:15 09:43:34 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cace' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:43:34 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf.
2014:10:15 09:43:34 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf')
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.3s
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf'
2014:10:15 09:43:34 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf'\n)
2014:10:15 09:43:34 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacf' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:34 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   10] (PROMPT-0->)
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:34 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    0.2s
2014:10:15 09:43:34 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cacf
2014:10:15 09:43:35 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf/min0.crd
2014:10:15 09:43:35 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.5s
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.5s
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.0s
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0810>
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf/min0.crd
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd17420b050>
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.0s
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.0s
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.0s
2014:10:15 09:43:35 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd.
2014:10:15 09:43:35 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd')
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd'
2014:10:15 09:43:35 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd'\n)
2014:10:15 09:43:35 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacd' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:35 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.1s
2014:10:15 09:43:35 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cacd
2014:10:15 09:43:35 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd/min0.crd
2014:10:15 09:43:35 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.2s
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.2s
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.0s
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdf10>
2014:10:15 09:43:35 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd/min0.crd
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0810>
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.0s
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.0s
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:35 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.0s
2014:10:15 09:43:36 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf/penta.top
2014:10:15 09:43:36 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdd10>
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf/penta.top
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdf10>
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.9s
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    0.9s
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    0.9s
2014:10:15 09:43:36 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd/penta.top
2014:10:15 09:43:36 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174206690>
2014:10:15 09:43:36 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd/penta.top
2014:10:15 09:43:36 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdd10>
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.2s
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.2s
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.2s
2014:10:15 09:43:37 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf/min.in
2014:10:15 09:43:37 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a52d0>
2014:10:15 09:43:37 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf/min.in
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174206690>
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.2s
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.2s
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:37 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.2s
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd/min.in
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203110>
2014:10:15 09:43:38 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd/min.in
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a52d0>
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    0.9s
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    0.9s
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    0.9s
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf/mdshort.in
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174206890>
2014:10:15 09:43:38 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf/mdshort.in
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 2183] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [  999] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 1381] (ncpus = 24\n     resources_ava ... sources_available.ncpus = 24\n)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 2565] (ncpus = 24\n     resources_ava ... sources_available.ncpus = 24\n)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [  814] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (ncpus = 24\n     resources_ava ... able.ncpus = 24\n     resource)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (s_available.ncpus = 24\n     r ... ources_available.ncpus = 24\n )
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (    resources_available.ncpus  ... 24\n     resources_available.n)
2014:10:15 09:43:38 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [    4] (cpus)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] ( = 24\n     resources_availabl ... ncpus = 24\n     resources_ava)2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)

2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (ilable.ncpus = 24\n     resour ... s_available.ncpus = 24\n     r)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (esources_available.ncpus = 24\ ...     resources_available.ncpus )
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (= 24\n     resources_available ... cpus = 24\n     resources_avai)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [    4] (labl)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (e.ncpus = 24\n     resources_a ... ilable.ncpus = 24\n     resour)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4094] (ces_available.ncpus = 24\n     ... resources_available.ncpus = 24)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4096] (\n     resources_available.ncp ... = 24\n     resources_available)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (.ncpus = 24\n     resources_av ... lable.ncpus = 24\n     resourc)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [    4] (es_a)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (vailable.ncpus = 24\n     reso ... ces_available.ncpus = 24\n    )
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] ( resources_available.ncpus = 2 ... n     resources_available.ncpu)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (s = 24\n     resources_availab ... .ncpus = 24\n     resources_av)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (ailable.ncpus = 24\n     resou ... es_available.ncpus = 24\n     )
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [    4] (reso)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (urces_available.ncpus = 24\n   ...  resources_available.ncpus = 2)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (4\n     resources_available.nc ... s = 24\n     resources_availab)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (le.ncpus = 24\n     resources_ ... ailable.ncpus = 24\n     resou)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (rces_available.ncpus = 24\n    ... resources_available.ncpus = 24)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [    4] (\n  )
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (   resources_available.ncpus = ... 4\n     resources_available.nc)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (pus = 24\n     resources_avail ... le.ncpus = 24\n     resources_)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 4095] (available.ncpus = 24\n     res ... rces_available.ncpus = 24\n   )
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [ 1228] (  resources_available.ncpus =  ... ailable.ncpus = 24\nPROMPT-0->)
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PBSJobService    : [DEBUG   ] Found the following 'ppn' configurations: {16: 5, 80: 2, 24: 3008}. Using 24 as default ppn.
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] Bootstrap command line: /bin/bash ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 543e79f62330e06129d5cac8 -p 543e79f72330e06129d5caca -t 10 -d 10 -c 24 -v 0.20 -m ec2-184-72-89-141.compute-1.amazonaws.com:27017  -a :  -e 'module load python'  -g /work/e290/shared/shared_pilot_ve_20140703  -l PBSPRO  -j APRUN  -k APRUN  -f 10.60.0.52 "]
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] Submitting SAGA job with description: {'Queue': 'debug', 'Executable': '/bin/bash', 'WorkingDirectory': '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca', 'Project': 'e290', 'WallTimeLimit': 10, 'Arguments': ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 543e79f62330e06129d5cac8 -p 543e79f72330e06129d5caca -t 10 -d 10 -c 24 -v 0.20 -m ec2-184-72-89-141.compute-1.amazonaws.com:27017  -a :  -e 'module load python'  -g /work/e290/shared/shared_pilot_ve_20140703  -l PBSPRO  -j APRUN  -k APRUN  -f 10.60.0.52 "], 'Error': 'AGENT.STDERR', 'Output': 'AGENT.STDOUT', 'TotalCPUCount': 24}
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Using Cray XT (e.g. Archer) specific '#PBS -l select=xx' flags (PBSPro_12).
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Generated PBS script:
#!/bin/bash
#PBS -o /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/AGENT.STDOUT
#PBS -e /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/AGENT.STDERR
#PBS -l walltime=0:10:00
#PBS -q debug
#PBS -P e290
#PBS -A e290
#PBS -l select=1
export    PBS_O_WORKDIR=/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
mkdir -p  /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
cd        /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
/bin/bash -l default_bootstrapper.sh -n radicalpilot -s 543e79f62330e06129d5cac8 -p 543e79f72330e06129d5caca -t 10 -d 10 -c 24 -v 0.20 -m ec2-184-72-89-141.compute-1.amazonaws.com:27017  -a :  -e 'module load python'  -g /work/e290/shared/shared_pilot_ve_20140703  -l PBSPRO  -j APRUN  -k APRUN  -f 10.60.0.52
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Creating working directory /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: mkdir -p /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [   84] (mkdir -p /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca\n)
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203110>
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.6s
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.6s
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.6s
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: SCRIPTFILE=`mktemp -t SAGA-Python-PBSJobScript.XXXXXX` &&  echo "
#!/bin/bash
#PBS -o /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/AGENT.STDOUT
#PBS -e /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/AGENT.STDERR
#PBS -l walltime=0:10:00
#PBS -q debug
#PBS -P e290
#PBS -A e290
#PBS -l select=1
export    PBS_O_WORKDIR=/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
mkdir -p  /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
cd        /work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca
/bin/bash -l default_bootstrapper.sh -n radicalpilot -s 543e79f62330e06129d5cac8 -p 543e79f72330e06129d5caca -t 10 -d 10 -c 24 -v 0.20 -m ec2-184-72-89-141.compute-1.amazonaws.com:27017  -a :  -e 'module load python'  -g /work/e290/shared/shared_pilot_ve_20140703  -l PBSPRO  -j APRUN  -k APRUN  -f 10.60.0.52  " > $SCRIPTFILE && /opt/pbs/12.1.400.132424/bin/qsub $SCRIPTFILE && rm -f $SCRIPTFILE
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [ 1026] (SCRIPTFILE=`mktemp -t SAGA-Pyt ... IPTFILE && rm -f $SCRIPTFILE\n)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd/mdshort.in
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0f10>
2014:10:15 09:43:39 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd/mdshort.in
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174206890>
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.5s
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.5s
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:39 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.5s
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   13] (2468435.sdb\n)
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Submitted PBS job with id: [pbs+ssh://login.archer.ac.uk/]-[2468435]
2014:10:15 09:43:39 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] assign job id  [pbs+ssh://login.archer.ac.uk/]-[2468435] / None to watch list (['[pbs+ssh://login.archer.ac.uk/]-[2468435]'])
2014:10:15 09:43:39 radical.pilot.MainProcess: [DEBUG   ] SAGA job submitted with job id [pbs+ssh://login.archer.ac.uk/]-[2468435]
2014:10:15 09:43:39 radical.pilot.MainProcess: [INFO    ] ComputePilot '543e79f72330e06129d5caca' state changed from 'Launching' to 'PendingActive'.
2014:10:15 09:43:40 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2.
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2')
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.2s
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2'
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] write: [   15] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2'\n)
2014:10:15 09:43:40 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad3' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:43:40 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad2' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] read : [   15] [   10] (PROMPT-0->)
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    0.1s
2014:10:15 09:43:40 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cad2
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2/min0.crd
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.4s
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.4s
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.0s
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5b50>
2014:10:15 09:43:40 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2/min0.crd
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0f10>
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.9s
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    0.9s
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    0.9s
2014:10:15 09:43:40 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0.
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0')
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0'
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0'\n)
2014:10:15 09:43:40 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad0' state changed from 'PendingInputStaging' to 'StagingInput'.
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.1s
2014:10:15 09:43:40 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e79fa2330e06129d5cad0
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.crd -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0/min0.crd
2014:10:15 09:43:40 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.crd')
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.crd
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.2s
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.crd'
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.crd'\n)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.2s
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5dd0>
2014:10:15 09:43:40 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.crd login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0/min0.crd
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5b50>
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.0s
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.0s
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.0s
2014:10:15 09:43:41 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2/penta.top
2014:10:15 09:43:41 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4450>
2014:10:15 09:43:41 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2/penta.top
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.crd                                       0%    0     0.0KB/s   --:-- ETApenta.crd                                     100% 2165     2.1KB/s   00:00    \n)
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a5dd0>
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.9s
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    0.9s
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    0.9s
2014:10:15 09:43:41 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0/penta.top
2014:10:15 09:43:41 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd950>
2014:10:15 09:43:41 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0/penta.top
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4450>
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    1.2s
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    1.2s
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    1.2s
2014:10:15 09:43:42 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2/min.in
2014:10:15 09:43:42 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203c90>
2014:10:15 09:43:42 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2/min.in
2014:10:15 09:43:42 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd950>
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.3s
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    1.3s
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.3s
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)
2014:10:15 09:43:43 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/min.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0/min.in
2014:10:15 09:43:43 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/min.in')
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/min.in
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/min.in'
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   53] (true; test -r '//home/vivek/coam-on-stampede/min.in'\n)
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741c46d0>
2014:10:15 09:43:43 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/min.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0/min.in
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203c90>
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    0.9s
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    0.9s
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    0.9s
2014:10:15 09:43:43 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2/mdshort.in
2014:10:15 09:43:43 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> use: ok!
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was unused for    0.1s
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   20] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   20] [   10] (PROMPT-0->)
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> use: ok!
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was unused for    0.1s
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> use: ok!
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was unused for    0.1s
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4950>
2014:10:15 09:43:43 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2/mdshort.in
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (min.in                                          0%    0     0.0KB/s   --:-- ETAmin.in                                        100%  225     0.2KB/s   00:00    \n)
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741c46d0>
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.9s
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    0.9s
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    0.9s
2014:10:15 09:43:44 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/mdshort.in -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0/mdshort.in
2014:10:15 09:43:44 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/mdshort.in')
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/mdshort.in
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/mdshort.in'
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   57] (true; test -r '//home/vivek/coam-on-stampede/mdshort.in'\n)
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4fd0>
2014:10:15 09:43:44 24873  InputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/mdshort.in login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0/mdshort.in
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4950>
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0310> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0001 was leased for    0.9s
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5590> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0004 was leased for    0.9s
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742a5850> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:44 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0005 was leased for    0.9s
2014:10:15 09:43:44 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad1' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:43:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacf' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   19] [  160] (mdshort.in                                      0%    0     0.0KB/s   --:-- ETAmdshort.in                                    100%  216     0.2KB/s   00:00    \n)
2014:10:15 09:43:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacd' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4fd0>
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    0.9s
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0002 was leased for    0.9s
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:43:45 24873  InputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    0.9s
2014:10:15 09:43:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad2' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:43:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad0' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:44:19 radical.pilot.MainProcess: [INFO    ] Performing periodical health check for 543e79f72330e06129d5caca (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2468435])
2014:10:15 09:44:19 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fd1741c42d0>
2014:10:15 09:44:19 24873  PilotLauncherWorker-1 saga.PTYShell         : [INFO    ] PTY prompt pattern: [\$#%>\]]\s*$
2014:10:15 09:44:19 radical.pilot.MainProcess: [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4190>
2014:10:15 09:44:19 radical.pilot.MainProcess: [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vb224@login.archer.ac.uk
2014:10:15 09:44:19 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   33] ( export PS1='$' ; set prompt='$'\n)
2014:10:15 09:44:19 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [  588] (Last login: Wed Oct 15 14:43:27 2014 from ool-43571463.dyn.optonline.net\n================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIf you are not authorised to use this account then you must logout immediately.\n\n================================================================================\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   21] (vb224@eslogin007:~> $)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] got initial shell prompt (5) (Last login: Wed Oct 15 14:43:27 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] Got initial shell prompt (5) (Last login: Wed Oct 15 14:43:27 2014 from ool-43571463.dyn.optonline.net
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------

For assistance please contact the service helpdesk at: support@archer.ac.uk

--------------------------------------------------------------------------------

If you are not authorised to use this account then you must logout immediately.

================================================================================
vb224@eslogin007:~> $)
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] running command shell:         exec /bin/sh -i
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   14] (eslogin007:~> )
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [  100] ( unset PROMPT_COMMAND ;  unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   10] (PROMPT-0->)
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] got new shell prompt
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which qdel
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   11] (which qdel\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   45] (/opt/pbs/12.1.400.132424/bin/qdel\nPROMPT-0->)
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which qsub
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   11] (which qsub\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   35] (/opt/pbs/12.1.400.132424/bin/qsub\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   10] (PROMPT-0->)
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: qsub --version
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   15] (qsub --version\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   38] (pbs_version = PBSPro_12.1.400.132424\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   10] (PROMPT-0->)
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which pbsnodes
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   15] (which pbsnodes\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   49] (/opt/pbs/12.1.400.132424/bin/pbsnodes\nPROMPT-0->)
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: pbsnodes --version
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   19] (pbsnodes --version\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   38] (pbs_version = PBSPro_12.1.400.132424\n)
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   10] (PROMPT-0->)
2014:10:15 09:44:20 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which qstat
2014:10:15 09:44:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   12] (which qstat\n)
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   36] (/opt/pbs/12.1.400.132424/bin/qstat\n)
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   10] (PROMPT-0->)
2014:10:15 09:44:21 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: qstat --version
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   16] (qstat --version\n)
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   48] (pbs_version = PBSPro_12.1.400.132424\nPROMPT-0->)
2014:10:15 09:44:21 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Found PBS tools: {'qdel': {'path': '/opt/pbs/12.1.400.132424/bin/qdel', 'version': '?'}, 'qsub': {'path': '/opt/pbs/12.1.400.132424/bin/qsub', 'version': 'pbs_version = PBSPro_12.1.400.132424\n'}, 'pbsnodes': {'path': '/opt/pbs/12.1.400.132424/bin/pbsnodes', 'version': 'pbs_version = PBSPro_12.1.400.132424\n'}, 'qstat': {'path': '/opt/pbs/12.1.400.132424/bin/qstat', 'version': 'pbs_version = PBSPro_12.1.400.132424\n'}}
2014:10:15 09:44:21 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: which aprun
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   12] (which aprun\n)
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   57] (/opt/cray/eslogin/eswrap/1.1.0-1.010400.915.0/bin/aprun\n)
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   10] (PROMPT-0->)
2014:10:15 09:44:21 24873  PilotLauncherWorker-1 saga.PBSJobService    : [INFO    ] Host 'login.archer.ac.uk' seems to be a Cray XT class machine.
2014:10:15 09:44:21 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/pbsnodes -a | grep -E "resources_available.ncpus"
2014:10:15 09:44:21 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [   99] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/pbsnodes -a | grep -E "resources_available.ncpus"\n)
2014:10:15 09:44:27 24873  Thread-8     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:44:27 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:44:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   57] (    job_state = Q\n    ctime = Wed Oct 15 14:43:40 2014\n)
2014:10:15 09:44:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   10] (PROMPT-0->)
2014:10:15 09:44:27 24873  Thread-8     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Pending)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 2479] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 1036] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [  123] (ncpus = 24\n     resources_available.ncpus = 24\n     resources_available.ncpus = 24\n     resources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [  123] (ncpus = 24\n     resources_available.ncpus = 24\n     resources_available.ncpus = 24\n     resources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 3934] (ncpus = 24\n     resources_ava ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 2220] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [  974] (ncpus = 24\n     resources_ava ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 1110] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [  826] (ncpus = 24\n     resources_ava ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 2220] (     resources_available.ncpus ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (ncpus = 24\n     resources_ava ... able.ncpus = 24\n     resource)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (s_available.ncpus = 24\n     r ... ources_available.ncpus = 24\n )
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (    resources_available.ncpus  ... 24\n     resources_available.n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [    4] (cpus)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] ( = 24\n     resources_availabl ... ncpus = 24\n     resources_ava)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (ilable.ncpus = 24\n     resour ... s_available.ncpus = 24\n     r)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (esources_available.ncpus = 24\ ...     resources_available.ncpus )
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (= 24\n     resources_available ... cpus = 24\n     resources_avai)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [    4] (labl)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (e.ncpus = 24\n     resources_a ... ilable.ncpus = 24\n     resour)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4094] (ces_available.ncpus = 24\n     ... resources_available.ncpus = 24)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4096] (\n     resources_available.ncp ... = 24\n     resources_available)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (.ncpus = 24\n     resources_av ... lable.ncpus = 24\n     resourc)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (es_available.ncpus = 24\n      ... sources_available.ncpus = 24\n)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (     resources_available.ncpus ...  24\n     resources_available.)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (ncpus = 24\n     resources_ava ... able.ncpus = 24\n     resource)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (s_available.ncpus = 24\n     r ... ources_available.ncpus = 24\n )
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [    8] (    reso)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (urces_available.ncpus = 24\n   ...  resources_available.ncpus = 2)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 4095] (4\n     resources_available.nc ... s = 24\n     resources_availab)
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [ 2319] (le.ncpus = 24\n     resources_ ... ailable.ncpus = 24\nPROMPT-0->)
2014:10:15 09:44:29 24873  PilotLauncherWorker-1 saga.PBSJobService    : [DEBUG   ] Found the following 'ppn' configurations: {16: 5, 80: 2, 24: 3008}. Using 24 as default ppn.
2014:10:15 09:44:29 24873  PilotLauncherWorker-1 saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -f 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|            (start_time)|(comp_time)'
2014:10:15 09:44:29 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [  173] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -f 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|            (start_time)|(comp_time)'\n)
2014:10:15 09:44:30 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   67] (    job_state = Q\n    ctime = Wed Oct 15 14:43:40 2014\nPROMPT-0->)
2014:10:15 09:44:30 radical.pilot.MainProcess: [INFO    ] pilot 543e79f72330e06129d5caca seems alive and well
2014:10:15 09:44:44 radical.pilot.MainProcess: [INFO    ] ComputePilot '543e79f72330e06129d5caca' state changed from 'PendingActive' to 'Active'.
2014:10:15 09:44:44 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacc' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:44 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cace' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:44 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacc' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:44:44 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cace' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:44:44 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad3' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:44 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad3' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:44:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad1' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad1' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:44:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacf' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacf' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:44:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacd' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacd' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:44:45 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad2' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:46 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad2' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:44:46 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad0' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:44:46 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad0' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:45:01 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:45:01 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cacc
2014:10:15 09:45:01 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacc' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:45:01 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_0.ncdf
2014:10:15 09:45:01 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc/md0.ncdf')
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacc/md0.ncdf
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for   76.2s
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc/md0.ncdf'
2014:10:15 09:45:01 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc/md0.ncdf'\n)
2014:10:15 09:45:01 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for   76.3s
2014:10:15 09:45:01 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_0.ncdf')
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203690>
2014:10:15 09:45:01 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacc/md0.ncdf /home/vivek/coam-on-stampede/md_0_0.ncdf
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:01    \n)
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203690>
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.3s
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:45:02 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.2s
2014:10:15 09:45:03 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacc' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:45:17 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:45:17 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cad3
2014:10:15 09:45:17 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad3' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:45:17 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_7.ncdf
2014:10:15 09:45:17 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3/md0.ncdf')
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad3/md0.ncdf
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for   14.6s
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3/md0.ncdf'
2014:10:15 09:45:17 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3/md0.ncdf'\n)
2014:10:15 09:45:17 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for   14.7s
2014:10:15 09:45:17 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_7.ncdf')
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0610>
2014:10:15 09:45:17 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad3/md0.ncdf /home/vivek/coam-on-stampede/md_0_7.ncdf
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:01    \n)
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0610>
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.4s
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:45:18 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.2s
2014:10:15 09:45:19 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad3' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:45:19 radical.pilot.MainProcess: [INFO    ] Performing periodical health check for 543e79f72330e06129d5caca (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2468435])
2014:10:15 09:45:19 radical.pilot.MainProcess: [INFO    ] pilot 543e79f72330e06129d5caca seems alive and well
2014:10:15 09:45:19 24873  Thread-9     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:45:19 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:45:19 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   84] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n    exec_host = mom4/51*0\n)
2014:10:15 09:45:19 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   10] (PROMPT-0->)
2014:10:15 09:45:19 24873  Thread-9     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:45:27 24873  Thread-8     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:45:27 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:45:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   94] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n    exec_host = mom4/51*0\nPROMPT-0->)
2014:10:15 09:45:27 24873  Thread-8     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:45:34 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:45:34 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cad0
2014:10:15 09:45:35 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad0' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:45:35 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_4.ncdf
2014:10:15 09:45:35 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0/md0.ncdf')
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad0/md0.ncdf
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for   16.3s
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0/md0.ncdf'
2014:10:15 09:45:35 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0/md0.ncdf'\n)
2014:10:15 09:45:35 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for   16.5s
2014:10:15 09:45:35 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_4.ncdf')
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203790>
2014:10:15 09:45:35 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad0/md0.ncdf /home/vivek/coam-on-stampede/md_0_4.ncdf
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:01    \n)
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203790>
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.7s
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:45:36 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.6s
2014:10:15 09:45:37 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad0' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:45:50 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:45:50 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cad2
2014:10:15 09:45:50 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad2' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:45:50 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_6.ncdf
2014:10:15 09:45:50 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2/md0.ncdf')
2014:10:15 09:45:50 24873  OutputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad2/md0.ncdf
2014:10:15 09:45:50 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:50 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:50 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:45:50 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for   14.1s
2014:10:15 09:45:50 24873  OutputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2/md0.ncdf'
2014:10:15 09:45:50 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2/md0.ncdf'\n)
2014:10:15 09:45:51 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for   14.2s
2014:10:15 09:45:51 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_6.ncdf')
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdd10>
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad2/md0.ncdf /home/vivek/coam-on-stampede/md_0_6.ncdf
2014:10:15 09:45:51 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdd10>
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.6s
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:45:52 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.5s
2014:10:15 09:45:52 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad2' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:46:06 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:46:06 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cace
2014:10:15 09:46:06 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cace' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:46:07 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_2.ncdf
2014:10:15 09:46:07 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace/md0.ncdf')
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cace/md0.ncdf
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for   14.5s
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace/md0.ncdf'
2014:10:15 09:46:07 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace/md0.ncdf'\n)
2014:10:15 09:46:07 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for   14.7s
2014:10:15 09:46:07 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_2.ncdf')
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0c10>
2014:10:15 09:46:07 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cace/md0.ncdf /home/vivek/coam-on-stampede/md_0_2.ncdf
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0c10>
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.6s
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:08 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.4s
2014:10:15 09:46:09 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cace' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:46:19 radical.pilot.MainProcess: [INFO    ] Performing periodical health check for 543e79f72330e06129d5caca (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2468435])
2014:10:15 09:46:19 radical.pilot.MainProcess: [INFO    ] pilot 543e79f72330e06129d5caca seems alive and well
2014:10:15 09:46:19 24873  Thread-9     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:46:19 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:46:19 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   94] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n    exec_host = mom4/51*0\nPROMPT-0->)
2014:10:15 09:46:19 24873  Thread-9     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:46:22 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:46:22 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cacd
2014:10:15 09:46:22 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacd' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:46:23 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_1.ncdf
2014:10:15 09:46:23 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd/md0.ncdf')
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacd/md0.ncdf
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for   14.4s
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd/md0.ncdf'
2014:10:15 09:46:23 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd/md0.ncdf'\n)
2014:10:15 09:46:23 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for   14.6s
2014:10:15 09:46:23 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_1.ncdf')
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fde10>
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacd/md0.ncdf /home/vivek/coam-on-stampede/md_0_1.ncdf
2014:10:15 09:46:23 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fde10>
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.5s
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:24 24873  OutputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.2s
2014:10:15 09:46:24 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacd' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:46:27 24873  Thread-8     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:46:27 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:46:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   57] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n)
2014:10:15 09:46:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   37] (    exec_host = mom4/51*0\nPROMPT-0->)
2014:10:15 09:46:27 24873  Thread-8     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:46:38 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:46:38 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cad1
2014:10:15 09:46:38 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad1' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:46:39 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_5.ncdf
2014:10:15 09:46:39 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1/md0.ncdf')
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cad1/md0.ncdf
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for   14.5s
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1/md0.ncdf'
2014:10:15 09:46:39 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1/md0.ncdf'\n)
2014:10:15 09:46:39 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for   14.7s
2014:10:15 09:46:39 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_5.ncdf')
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4d10>
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cad1/md0.ncdf /home/vivek/coam-on-stampede/md_0_5.ncdf
2014:10:15 09:46:39 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741c4d10>
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.5s
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:40 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.3s
2014:10:15 09:46:40 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cad1' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:46:54 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:46:54 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e79fa2330e06129d5cacf
2014:10:15 09:46:55 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacf' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:46:55 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf/md0.ncdf -> file://localhost/home/vivek/coam-on-stampede/md_0_3.ncdf
2014:10:15 09:46:55 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf/md0.ncdf')
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e79fa2330e06129d5cacf/md0.ncdf
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for   14.6s
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf/md0.ncdf'
2014:10:15 09:46:55 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  130] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf/md0.ncdf'\n)
2014:10:15 09:46:55 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was unused for   14.7s
2014:10:15 09:46:55 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File.copy ('file://localhost/home/vivek/coam-on-stampede/md_0_3.ncdf')
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.ShellFile        : [DEBUG   ] run_sync: mkdir -p '/home/vivek/coam-on-stampede/'
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] write: [   18] [   41] (mkdir -p '/home/vivek/coam-on-stampede/'\n)
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] read : [   18] [   10] (PROMPT-0->)
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174206690>
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e79fa2330e06129d5cacf/md0.ncdf /home/vivek/coam-on-stampede/md_0_3.ncdf
2014:10:15 09:46:55 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md0.ncdf                                        0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md0.ncdf                                      100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174206690>
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was leased for    1.4s
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:56 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0003 was leased for    1.3s
2014:10:15 09:46:56 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e79fa2330e06129d5cacf' state changed from 'StagingOutput' to 'Done'.
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'postexec.py', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'pycoco.py', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string './penta.top' into dict '{'action': 'Transfer', 'source': './penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_0.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_0.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_1.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_1.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_1.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_2.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_2.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_2.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_3.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_3.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_3.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_4.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_4.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_4.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_5.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_5.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_5.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_6.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_6.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_6.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'md_0_7.ncdf' into dict '{'action': 'Transfer', 'source': 'md_0_7.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_7.ncdf', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min10.crd' into dict '{'action': 'Transfer', 'source': 'min10.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min10.crd', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min11.crd' into dict '{'action': 'Transfer', 'source': 'min11.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min11.crd', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min12.crd' into dict '{'action': 'Transfer', 'source': 'min12.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min12.crd', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min13.crd' into dict '{'action': 'Transfer', 'source': 'min13.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min13.crd', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min14.crd' into dict '{'action': 'Transfer', 'source': 'min14.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min14.crd', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min15.crd' into dict '{'action': 'Transfer', 'source': 'min15.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min15.crd', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min16.crd' into dict '{'action': 'Transfer', 'source': 'min16.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min16.crd', 'priority': 0}'
2014:10:15 09:46:56 radical.pilot.MainProcess: [DEBUG   ] Converting string 'min17.crd' into dict '{'action': 'Transfer', 'source': 'min17.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min17.crd', 'priority': 0}'
2014:10:15 09:46:57 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e7ad02330e06129d5cad4' state changed from 'New' to 'PendingInputStaging'.
2014:10:15 09:46:57 radical.pilot.MainProcess: [INFO    ] Scheduled ComputeUnits [] for execution on ComputePilot '543e79f72330e06129d5caca'.
2014:10:15 09:46:57 radical.pilot.MainProcess: [INFO    ] 0 units remain unscheduled
2014:10:15 09:46:57 radical.pilot.MainProcess: [INFO    ] Creating ComputeUnit sandbox directory sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4.
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] saga.fs.Directory ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4')
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])2014:10:15 09:46:57 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e7ad02330e06129d5cad4' state changed from 'PendingInputStaging' to 'StagingInput'.

2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.8s
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] run_sync: cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4'
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  125] (cd / &&  mkdir -p '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4'\n)
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-0->)
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    0.1s
2014:10:15 09:46:57 radical.pilot.MainProcess: [INFO    ] Processing input file transfers for ComputeUnit 543e7ad02330e06129d5cad4
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/postexec.py
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py')
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for  192.1s
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py'
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [  119] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py'\n)
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.9s
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174206290>
2014:10:15 09:46:57 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/postexec.py
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (postexec.py                                     0%    0     0.0KB/s   --:-- ETApostexec.py                                   100%  523     0.5KB/s   00:00    \n)
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174206290>
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.0s
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.0s
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.0s
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/pycoco.py
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py')
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py'
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [  117] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py'\n)
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.2s
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd17427a450>
2014:10:15 09:46:58 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/pycoco.py login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/pycoco.py
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (pycoco.py                                       0%    0     0.0KB/s   --:-- ETApycoco.py                                     100% 3950     3.9KB/s   00:00    \n)
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd17427a450>
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.0s
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.0s
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.0s
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/penta.top -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/penta.top
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/penta.top')
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/penta.top
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/penta.top'
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   56] (true; test -r '//home/vivek/coam-on-stampede/penta.top'\n)
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0150>
2014:10:15 09:46:59 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/penta.top login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/penta.top
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:46:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (penta.top                                       0%    0     0.0KB/s   --:-- ETApenta.top                                     100%   33KB  32.8KB/s   00:00    \n)
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1742a0150>
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.1s
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.1s
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.1s
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_0.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_0.ncdf
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_0.ncdf')
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_0.ncdf
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_0.ncdf'
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_0.ncdf'\n)
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1786853d0>
2014:10:15 09:47:00 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_0.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_0.ncdf
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (md_0_0.ncdf                                     0%    0     0.0KB/s   --:-- ETAmd_0_0.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1786853d0>
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.7s
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.7s
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.7s
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_1.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_1.ncdf
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_1.ncdf')
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_1.ncdf
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_1.ncdf'
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_1.ncdf'\n)
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203ed0>
2014:10:15 09:47:02 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_1.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_1.ncdf
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (md_0_1.ncdf                                     0%    0     0.0KB/s   --:-- ETAmd_0_1.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203ed0>
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.4s
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.4s
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.4s
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_2.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_2.ncdf
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_2.ncdf')
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_2.ncdf
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_2.ncdf'
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_2.ncdf'\n)
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd150>
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_2.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_2.ncdf
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (md_0_2.ncdf                                     0%    0     0.0KB/s   --:-- ETAmd_0_2.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fd150>
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.4s
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.4s
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.4s
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_3.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_3.ncdf
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_3.ncdf')
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_3.ncdf
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_3.ncdf'
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_3.ncdf'\n)
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203690>
2014:10:15 09:47:05 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_3.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_3.ncdf
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (md_0_3.ncdf                                     0%    0     0.0KB/s   --:-- ETAmd_0_3.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203690>
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.4s
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.4s
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.4s
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_4.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_4.ncdf
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_4.ncdf')
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_4.ncdf
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_4.ncdf'
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_4.ncdf'\n)
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203790>
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_4.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_4.ncdf
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (md_0_4.ncdf                                     0%    0     0.0KB/s   --:-- ETAmd_0_4.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203790>
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.2s
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.2s
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.2s
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_5.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_5.ncdf
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_5.ncdf')
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_5.ncdf
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_5.ncdf'
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_5.ncdf'\n)
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203390>
2014:10:15 09:47:08 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_5.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_5.ncdf
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md_0_5.ncdf                                     0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md_0_5.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203390>
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.3s
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.3s
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.3s
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_6.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_6.ncdf
2014:10:15 09:47:09 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_6.ncdf')
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_6.ncdf
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.1s
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_6.ncdf'
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_6.ncdf'\n)
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.1s
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.1s
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd174203050>
2014:10:15 09:47:09 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_6.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_6.ncdf
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [  160] (md_0_6.ncdf                                     0%    0     0.0KB/s   --:-- ETAmd_0_6.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd174203050>
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.5s
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.5s
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.5s
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Transferring input file file://localhost//home/vivek/coam-on-stampede/md_0_7.ncdf -> sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/md_0_7.ncdf
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('file://localhost//home/vivek/coam-on-stampede/md_0_7.ncdf')
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] init_instance file://localhost//home/vivek/coam-on-stampede/md_0_7.ncdf
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for file://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> use: ok!
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was unused for    0.2s
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.ShellFile        : [DEBUG   ] run_sync: true; test -r '//home/vivek/coam-on-stampede/md_0_7.ncdf'
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] write: [   16] [   58] (true; test -r '//home/vivek/coam-on-stampede/md_0_7.ncdf'\n)
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.ShellDirectory   : [DEBUG   ] read : [   16] [   10] (PROMPT-0->)
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.ShellFile        : [INFO    ] file initialized (0)()
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for fork://localhost/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> use: ok!
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was unused for    0.2s
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was unused for    0.2s
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdc90>
2014:10:15 09:47:11 24873  InputFileTransferWorker-1 saga.PTYProcess       : [INFO    ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vb224.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/coam-on-stampede/md_0_7.ncdf login.archer.ac.uk://work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/md_0_7.ncdf
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   79] (md_0_7.ncdf                                     0%    0     0.0KB/s   --:-- ETA)
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] read : [   26] [   81] (md_0_7.ncdf                                   100%   70KB  70.0KB/s   00:00    \n)
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 saga.PTYProcess       : [DEBUG   ] PTYProcess del  <saga.utils.pty_process.PTYProcess object at 0x7fd1741fdc90>
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0000 was leased for    1.3s
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd1742e0390> for file://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0002 was leased for    1.3s
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [DEBUG   ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fd178705450> for fork://localhost/shell_file_adaptor_command_shell
2014:10:15 09:47:12 24873  InputFileTransferWorker-1 radical.utils         : [ERROR   ] lo.0003 was leased for    1.3s
2014:10:15 09:47:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingInput
2014:10:15 09:47:13 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e7ad02330e06129d5cad4' state changed from 'StagingInput' to 'PendingExecution'.
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state PendingExecution
2014:10:15 09:47:13 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e7ad02330e06129d5cad4' state changed from 'PendingExecution' to 'Scheduling'.
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Scheduling
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Scheduling
2014:10:15 09:47:13 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e7ad02330e06129d5cad4' state changed from 'Scheduling' to 'Executing'.
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [INFO    ] Performing periodical health check for 543e79f72330e06129d5caca (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2468435])
2014:10:15 09:47:19 radical.pilot.MainProcess: [INFO    ] pilot 543e79f72330e06129d5caca seems alive and well
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 24873  Thread-9     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   57] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n)
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   37] (    exec_host = mom4/51*0\nPROMPT-0->)
2014:10:15 09:47:20 24873  Thread-9     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 24873  Thread-8     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:27 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   94] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n    exec_host = mom4/51*0\nPROMPT-0->)
2014:10:15 09:47:27 24873  Thread-8     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:47:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:03 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:04 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:05 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:06 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:07 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:08 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:09 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:10 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:11 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:12 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:13 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:14 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:15 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:16 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:17 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:18 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [INFO    ] Performing periodical health check for 543e79f72330e06129d5caca (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2468435])
2014:10:15 09:48:19 radical.pilot.MainProcess: [INFO    ] pilot 543e79f72330e06129d5caca seems alive and well
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:19 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 24873  Thread-9     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] write: [   19] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] read : [   19] [   94] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n    exec_host = mom4/51*0\nPROMPT-0->)
2014:10:15 09:48:20 24873  Thread-9     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:20 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:21 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:22 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:23 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:24 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:25 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:26 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:27 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 24873  Thread-8     saga.PTYShell         : [DEBUG   ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] write: [   22] [  162] (unset GREP_OPTIONS; /opt/pbs/12.1.400.132424/bin/qstat -fx 2468435 |             grep -E '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(comp_time)'\n)
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] read : [   22] [   94] (    job_state = R\n    ctime = Wed Oct 15 14:43:40 2014\n    exec_host = mom4/51*0\nPROMPT-0->)
2014:10:15 09:48:28 24873  Thread-8     saga.PBSJobService    : [INFO    ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2468435] (state: Running)
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:28 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:29 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:30 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:31 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:32 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:33 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:34 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:35 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:36 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:37 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:38 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:39 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:40 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:41 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:42 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:43 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:44 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:45 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:46 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:47 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:48 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:49 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:50 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:51 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:52 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:53 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:54 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:55 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:56 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:57 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:58 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:48:59 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:00 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state Executing
2014:10:15 09:49:01 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e7ad02330e06129d5cad4' state changed from 'Executing' to 'StagingOutput'.
2014:10:15 09:49:02 radical.pilot.MainProcess: [INFO    ] OFTW cu found, progressing ...
2014:10:15 09:49:02 radical.pilot.MainProcess: [INFO    ] Processing output file transfers for ComputeUnit 543e7ad02330e06129d5cad4
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingOutput
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingOutput
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingOutput
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/min10.crd -> file://localhost/home/vivek/coam-on-stampede/min10.crd
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/min10.crd')
2014:10:15 09:49:02 24873  OutputFileTransferWorker-2 saga.ShellFile        : [INFO    ] init_instance sftp://login.archer.ac.uk/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca//unit-543e7ad02330e06129d5cad4/min10.crd
2014:10:15 09:49:02 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm check   pool (['sftp://login.archer.ac.uk/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell'])
2014:10:15 09:49:02 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object for sftp://login.archer.ac.uk/shell_file_adaptor_command_shell (3)
2014:10:15 09:49:02 24873  OutputFileTransferWorker-2 radical.utils         : [DEBUG   ] lm lease   object <radical.utils.lease_manager._LeaseObject object at 0x7fd178652e90> use: ok!
2014:10:15 09:49:02 24873  OutputFileTransferWorker-2 radical.utils         : [ERROR   ] lo.0000 was unused for  109.4s
2014:10:15 09:49:02 24873  OutputFileTransferWorker-2 saga.ShellDirectory   : [DEBUG   ] run_sync: true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/min10.crd'
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] write: [    7] [  131] (true; test -r '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/min10.crd'\n)
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingOutput
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] read : [    7] [   10] (PROMPT-1->)
2014:10:15 09:49:02 radical.pilot.MainProcess: [DEBUG   ] Compute unit 543e7ad02330e06129d5cad4 in state StagingOutput
2014:10:15 09:49:02 radical.pilot.MainProcess: [ERROR   ] Output transfer failed: File does not exist: '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/min10.crd' -  (/home/vivek/devel/local/lib/python2.7/site-packages/saga/adaptors/shell/shell_file.py +1030 (initialize)  :  raise saga.DoesNotExist("File does not exist: '%s' - %s" % (self.url.path, out)))
Traceback (most recent call last):
  File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/pilot/controller/output_file_transfer_worker.py", line 148, in run
    session=self._session
  File "/home/vivek/devel/local/lib/python2.7/site-packages/saga/filesystem/file.py", line 86, in __init__
    _adaptor, _adaptor_state, _ttype=_ttype)
  File "/home/vivek/devel/local/lib/python2.7/site-packages/saga/namespace/entry.py", line 89, in __init__
    url, flags, session, ttype=_ttype)
  File "/home/vivek/devel/local/lib/python2.7/site-packages/saga/base.py", line 101, in __init__
    self._init_task = self._adaptor.init_instance (adaptor_state, *args, **kwargs)
  File "/home/vivek/devel/local/lib/python2.7/site-packages/saga/adaptors/cpi/decorators.py", line 51, in wrap_function
    return sync_function (self, *args, **kwargs)
  File "/home/vivek/devel/local/lib/python2.7/site-packages/saga/adaptors/shell/shell_file.py", line 981, in init_instance
    self.initialize ()
  File "/home/vivek/devel/local/lib/python2.7/site-packages/saga/adaptors/shell/shell_file.py", line 1030, in initialize
    raise saga.DoesNotExist("File does not exist: '%s' - %s" % (self.url.path, out))
DoesNotExist: File does not exist: '/work/e290/e290/vb224/radical.pilot.sandbox/pilot-543e79f72330e06129d5caca/unit-543e7ad02330e06129d5cad4/min10.crd' -  (/home/vivek/devel/local/lib/python2.7/site-packages/saga/adaptors/shell/shell_file.py +1030 (initialize)  :  raise saga.DoesNotExist("File does not exist: '%s' - %s" % (self.url.path, out)))

2014:10:15 09:49:02 radical.pilot.MainProcess: [INFO    ] RUN ComputeUnit '543e7ad02330e06129d5cad4' state changed from 'StagingOutput' to 'Failed'.
2014:10:15 09:49:02 radical.pilot.MainProcess: [ERROR   ] unit manager controller thread caught system exit -- forcing application shutdown
Traceback (most recent call last):
  File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/pilot/controller/unit_manager_controller.py", line 296, in run
    self.call_unit_state_callbacks(unit_id, new_state)
  File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/pilot/controller/unit_manager_controller.py", line 196, in call_unit_state_callbacks
    new_state)
  File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/runme.py", line 44, in unit_state_change_cb
    sys.exit(1)
SystemExit: 1
Traceback (most recent call last):
  File "/home/vivek/devel/bin/extasy", line 9, in <module>
    load_entry_point('radical.ensemblemd.extasy==0.1', 'console_scripts', 'extasy')()
  File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/runme.py", line 150, in main
    Analyzer(umgr,RPconfig,Kconfig,i)
  File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/analyzer.py", line 33, in Analyzer
    unit.wait()
  File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/pilot/compute_unit.py", line 397, in wait
    time.sleep(0.1)
KeyboardInterrupt