Created
October 15, 2014 13:42
-
-
Save vivek-bala/b642eb8e863e68048098 to your computer and use it in GitHub Desktop.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| cat extasy.log | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] radical.pilot version: 0.20 (v0.20-167-g0a3a8ec@(detached) | |
| 2014:10:15 09:13:41 24250 MainThread saga : [INFO ] saga-python version: 0.20 | |
| 2014:10:15 09:13:41 24250 MainThread radical.utils : [DEBUG ] lm new manager | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.myproxy | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.myproxy for saga.Context API with URL scheme(s) ['myproxy://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.x509 | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.x509 for saga.Context API with URL scheme(s) ['x509://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.ssh | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.ssh for saga.Context API with URL scheme(s) ['ssh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.userpass | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.userpass for saga.Context API with URL scheme(s) ['userpass://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_job | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Service API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Job API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_file | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Entry API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.File API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_resource | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [WARNING ] Skipping adaptor saga.adaptors.shell.shell_resource: beta versions are disabled (v0.1.beta) | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.redis.redis_advert | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [WARNING ] Skipping adaptor saga.adaptors.redis.redis_advert 1: module loading failed: No module named redis | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.sge.sgejob | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Service API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Job API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.pbs.pbsjob | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Service API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Job API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.lsf.lsfjob | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Service API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Job API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.condor.condorjob | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Service API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Job API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.slurm.slurm_job | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Service API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Job API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.http.http_file | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.http.http_file for saga.namespace.Entry API with URL scheme(s) ['http://', 'https://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.http.http_file for saga.filesystem.File API with URL scheme(s) ['http://', 'https://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.aws.ec2_resource | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.Context API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Manager API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Compute API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.loadl.loadljob | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Service API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Job API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.globus_online.go_file | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Directory API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Entry API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.Directory API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.File API with URL scheme(s) ['go+gsisftp://', 'go+gridftp://'] | |
| 2014:10:15 09:13:41 24250 MainThread saga.saga.adaptor.ssh : [INFO ] default ssh key at /home/vivek/.ssh/id_rsa | |
| 2014:10:15 09:13:41 24250 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /home/vivek/.ssh/known_hosts (no public key: /home/vivek/.ssh/known_hosts.pub) | |
| 2014:10:15 09:13:41 24250 MainThread saga.ContextSSH : [INFO ] init SSH context for key at '/home/vivek/.ssh/id_rsa' done | |
| 2014:10:15 09:13:41 24250 MainThread saga.DefaultSession : [DEBUG ] default context [saga.adaptor.ssh ] : {'LifeTime' : '-1', 'Type' : 'ssh', 'UserCert' : '/home/vivek/.ssh/id_rsa.pub', 'UserKey' : '/home/vivek/.ssh/id_rsa'} | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] using database url mongodb://ec2-184-72-89-141.compute-1.amazonaws.com:27017/ | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] using database name radicalpilot | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for local.localhost | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for ncar.yellowstone | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for radical.tutorial | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for lrz.supermuc | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for das4.fs2 | |
| 2014:10:15 09:13:41 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for epsrc.archer | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.stampede | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.trestles | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.gordon | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.blacklight | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.lonestar | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for iu.bigred2 | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for iu.quarry | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for rice.davinci | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.sierra | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.alamo | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.hotel | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.india | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] New Session created{'uid': '543e73062330e05eba5111f9', 'created': datetime.datetime(2014, 10, 15, 13, 13, 42, 51910), 'database_auth': ':', 'database_name': 'radicalpilot', 'database_url': 'mongodb://ec2-184-72-89-141.compute-1.amazonaws.com:27017/radicalpilot', 'last_reconnect': None}. | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [DEBUG ] Worker thread (ID: Thread-1[140382012700416]) for PilotManager 543e73062330e05eba5111fa started. | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [WARNING ] using alias 'xsede.stampede' for deprecated resource key 'stampede.tacc.utexas.edu' | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [DEBUG ] saga.utils.PTYShell ('sftp://stampede.tacc.utexas.edu/') | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad418a8890> | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [DEBUG ] open master pty for [ssh] [vivek91@stampede.tacc.utexas.edu] vivek91: /usr/bin/env TERM=vt100 "/usr/bin/ssh" -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=yes -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vivek91@stampede.tacc.utexas.edu' | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad418a8c10> | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=yes -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vivek91@stampede.tacc.utexas.edu | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:42 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for PilotManager 543e73062330e05eba5111fa. | |
| 2014:10:15 09:13:43 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2014:10:15 09:13:43 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n) | |
| 2014:10:15 09:13:44 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2014:10:15 09:13:44 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 2\n) | |
| 2014:10:15 09:13:45 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n) | |
| 2014:10:15 09:13:45 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 3\n) | |
| 2014:10:15 09:13:45 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 2400] (Last login: Tue Oct 14 17:25:0 ... __________________________\n\n) | |
| 2014:10:15 09:13:45 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Tue Oct 14 17:25:05 2014 from nat-alex-resnet-out-6.rutgers.edu | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:45 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_3_SAGA: (5) (Last login: Tue Oct 14 17:25:05 2014 from nat-alex-resnet-out-6.rutgers.edu | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:46 radical.pilot.MainProcess: [DEBUG ] write: [ 5] [ 28] ( printf 'HELLO_%d_SAGA\n' 3\n) | |
| 2014:10:15 09:13:47 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 404] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\nTo rebuild the collection, load the modules you wish then do:\n $ module save default\nIf you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:13:47 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 244] (---------------------- Project balances for user vivek91 ----------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB140109 140 2015-04-04 | TG-MCB090174 95436 2015-09-30 | \n) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 405] (------------------------ Disk quotas for user vivek91 -------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 2.5 5.0 49.38 128728 150000 85.82 |\n| /work 7.7 1024.0 0.75 155014 3000000 5.17 |\n-------------------------------------------------------------------------------\n) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 397] (\nTip 65 (See "module help tacc_tips" for features or how to disable)\n\n Commands like ls, mv and cp support file globbing pattern matching:\n $ ls t* # -> list all files that start with t\n $ ls [tx]* # -> list all files that do start with t or x\n $ ls [^tx]* # -> list all files that do NOT start with t or x\n $ ls t?.sh # -> list files like t1.sh t2.sh but not t22.sh\n\n) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 311] (\n=======================================================================\n\n Support for ~/.profile_user will be removed on October 28, 2014.\n See /usr/local/startup_scripts/transition.txt for remedies.\n\n=======================================================================\n\n) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] read : [ 5] [ 84] (login4.stampede(1)$ $$HELLO_1_SAGA\n$$HELLO_2_SAGA\n$$HELLO_3_SAGA\n$HELLO_3_SAGA\n$) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ( | |
| See "man slurm" or the Stampede user guide for more detailed information. | |
| --> To see all the software that is available across all compilers and | |
| mpi stacks, issue: "module spider" | |
| --> To see which software packages are available with your currently loaded | |
| compiler and mpi stack, issue: "module avail" | |
| --> Stampede has three parallel file systems: $HOME (permanent, | |
| quota'd, backed-up) $WORK (permanent, quota'd, not backed-up) and | |
| $SCRATCH (high-speed purged storage). The "cdw" and "cds" aliases | |
| are provided as a convenience to change to your $WORK and $SCRATCH | |
| directories, respectively. | |
| ______________________________________________________________________________ | |
| Lmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2". | |
| To rebuild the collection, load the modules you wish then do: | |
| $ module save default | |
| If you no longer want this module collection do: | |
| rm ~/.lmod.d/default | |
| For more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules | |
| Restoring modules to system default | |
| ---------------------- Project balances for user vivek91 ---------------------- | |
| | Name Avail SUs Expires | Name Avail SUs Expires | | |
| | TG-MCB140109 140 2015-04-04 | TG-MCB090174 95436 2015-09-30 | | |
| ------------------------ Disk quotas for user vivek91 ------------------------- | |
| | Disk Usage (GB) Limit %Used File Usage Limit %Used | | |
| | /home1 2.5 5.0 49.38 128728 150000 85.82 | | |
| | /work 7.7 1024.0 0.75 155014 3000000 5.17 | | |
| ------------------------------------------------------------------------------- | |
| Tip 65 (See "module help tacc_tips" for features or how to disable) | |
| Commands like ls, mv and cp support file globbing pattern matching: | |
| $ ls t* # -> list all files that start with t | |
| $ ls [tx]* # -> list all files that do start with t or x | |
| $ ls [^tx]* # -> list all files that do NOT start with t or x | |
| $ ls t?.sh # -> list files like t1.sh t2.sh but not t22.sh | |
| ======================================================================= | |
| Support for ~/.profile_user will be removed on October 28, 2014. | |
| See /usr/local/startup_scripts/transition.txt for remedies. | |
| ======================================================================= | |
| login4.stampede(1)$ $$HELLO_1_SAGA | |
| $$HELLO_2_SAGA | |
| $$HELLO_3_SAGA | |
| $HELLO_3_SAGA) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ( | |
| $) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) ( | |
| $) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad418a8e50> | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vivek91@stampede.tacc.utexas.edu | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 2397] (Last login: Wed Oct 15 08:13:4 ... __________________________\n\n) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Wed Oct 15 08:13:46 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Last login: Wed Oct 15 08:13:46 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:13:48 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:13:49 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 404] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\nTo rebuild the collection, load the modules you wish then do:\n $ module save default\nIf you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 244] (---------------------- Project balances for user vivek91 ----------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB140109 140 2015-04-04 | TG-MCB090174 95436 2015-09-30 | \n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 405] (------------------------ Disk quotas for user vivek91 -------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 2.5 5.0 49.38 128728 150000 85.82 |\n| /work 7.7 1024.0 0.75 155014 3000000 5.17 |\n-------------------------------------------------------------------------------\n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 205] (\nTip 47 (See "module help tacc_tips" for features or how to disable)\n\n Normally, "ls" does not show files that begin with a "." (so-called "hidden files"). You can list these files with "ls -a".\n\n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 311] (\n=======================================================================\n\n Support for ~/.profile_user will be removed on October 28, 2014.\n See /usr/local/startup_scripts/transition.txt for remedies.\n\n=======================================================================\n\n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 21] (login4.stampede(1)$ $) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 1] ($) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] got new shell prompt | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] run_sync: echo "WORKDIR: $WORK" | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 22] (echo "WORKDIR: $WORK"\n) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 40] (WORKDIR: /work/02734/vivek91\nPROMPT-0->) | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] Determined remote working directory for sftp://stampede.tacc.utexas.edu/: '/work/02734/vivek91' | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] PTYShell del <saga.utils.pty_shell.PTYShell object at 0x7fad418a8890> | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [INFO ] Launching ComputePilot {u'state': u'PendingLaunch', u'commands': [], u'description': {u'project': u'TG-MCB090174', u'resource': u'stampede.tacc.utexas.edu', u'queue': u'normal', u'sandbox': None, u'cleanup': None, u'pilot_agent_priv': None, u'access_schema': None, u'memory': None, u'cores': 64, u'runtime': 60}, u'sagajobid': None, u'started': None, u'cores_per_node': None, u'output_transfer_started': None, u'finished': None, u'submitted': datetime.datetime(2014, 10, 15, 13, 13, 50, 924000), u'output_transfer_finished': None, u'sandbox': u'sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/', u'pilotmanager': u'543e73062330e05eba5111fa', u'unitmanager': None, u'heartbeat': None, u'statehistory': [{u'timestamp': datetime.datetime(2014, 10, 15, 13, 13, 50, 922000), u'state': u'PendingLaunch'}], u'input_transfer_started': None, u'_id': ObjectId('543e73062330e05eba5111fb'), u'input_transfer_finished': None, u'nodes': None, u'log': []} | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [WARNING ] using alias 'xsede.stampede' for deprecated resource key 'stampede.tacc.utexas.edu' | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [INFO ] Using pilot agent /home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [INFO ] Using bootstrapper /home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] Creating agent sandbox 'sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/'. | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] saga.fs.Directory ('sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/') | |
| 2014:10:15 09:13:50 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm check pool ([]) | |
| 2014:10:15 09:13:50 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm create pool for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (<type 'str'>) (<radical.utils.lease_manager.LeaseManager object at 0x7fad41e49690>) | |
| 2014:10:15 09:13:50 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (0) | |
| 2014:10:15 09:13:50 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm create object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:50 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad417b8f50> | |
| 2014:10:15 09:13:50 24250 PilotLauncherWorker-1 saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad417be090> | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vivek91@stampede.tacc.utexas.edu | |
| 2014:10:15 09:13:50 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] PTYProcess del <saga.utils.pty_process.PTYProcess object at 0x7fad418a8e50> | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [INFO ] Starting InputFileTransferWorker | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [INFO ] Starting InputFileTransferWorker | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] Worker thread (ID: Thread-3[140381966386944]) for UnitManager 543e730f2330e05eba5111fc started. | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [INFO ] Loaded scheduler: DirectSubmissionScheduler. | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 2397] (Last login: Wed Oct 15 08:13:4 ... __________________________\n\n) | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Wed Oct 15 08:13:48 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Last login: Wed Oct 15 08:13:48 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:51 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 543e730f2330e05eba5111fc. | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 543e730f2330e05eba5111fc. | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 543e730f2330e05eba5111fc. | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 543e730f2330e05eba5111fc. | |
| 2014:10:15 09:13:51 radical.pilot.MainProcess: [INFO ] ComputePilot '543e73062330e05eba5111fb' state changed from 'PendingLaunch' to 'Launching'. | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start0.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start0.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out0.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out0.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start1.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start1.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out1.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out1.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start2.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start2.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out2.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out2.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start3.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start3.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out3.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out3.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start4.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start4.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out4.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out4.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start5.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start5.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out5.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out5.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start6.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start6.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out6.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out6.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start7.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start7.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out7.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out7.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start8.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start8.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out8.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out8.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start9.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start9.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out9.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out9.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start10.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start10.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out10.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out10.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start11.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start11.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out11.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out11.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start12.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start12.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out12.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out12.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start13.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start13.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out13.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out13.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start14.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start14.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out14.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out14.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start15.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start15.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out15.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out15.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start16.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start16.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out16.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out16.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start17.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start17.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out17.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out17.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start18.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start18.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out18.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out18.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start19.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start19.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out19.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out19.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start20.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start20.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out20.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out20.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start21.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start21.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out21.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out21.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start22.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start22.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out22.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out22.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start23.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start23.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out23.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out23.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start24.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start24.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out24.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out24.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start25.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start25.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out25.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out25.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start26.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start26.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out26.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out26.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start27.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start27.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out27.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out27.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start28.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start28.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out28.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out28.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start29.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start29.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out29.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out29.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start30.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start30.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out30.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out30.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start31.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start31.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out31.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out31.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start32.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start32.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out32.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out32.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start33.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start33.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out33.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out33.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start34.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start34.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out34.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out34.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start35.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start35.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out35.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out35.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start36.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start36.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out36.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out36.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start37.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start37.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out37.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out37.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start38.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start38.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out38.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out38.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start39.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start39.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out39.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out39.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start40.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start40.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out40.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out40.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start41.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start41.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out41.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out41.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start42.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start42.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out42.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out42.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start43.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start43.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out43.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out43.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start44.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start44.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out44.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out44.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start45.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start45.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out45.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out45.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start46.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start46.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out46.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out46.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start47.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start47.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out47.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out47.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start48.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start48.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out48.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out48.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start49.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start49.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out49.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out49.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start50.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start50.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out50.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out50.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start51.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start51.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out51.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out51.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start52.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start52.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out52.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out52.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start53.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start53.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out53.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out53.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 404] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\nTo rebuild the collection, load the modules you wish then do:\n $ module save default\nIf you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start54.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start54.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out54.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out54.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start55.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start55.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out55.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out55.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start56.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start56.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out56.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out56.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start57.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start57.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out57.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out57.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start58.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start58.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out58.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out58.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start59.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start59.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out59.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out59.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start60.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start60.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out60.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out60.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start61.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start61.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out61.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out61.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start62.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start62.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out62.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out62.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh > run.sh' into dict '{'action': 'Transfer', 'source': '/home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'run.sh', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '/home/vivek/grlsd-on-stampede/temp/start63.gro > start.gro' into dict '{'action': 'Transfer', 'source': '/home/vivek/grlsd-on-stampede/temp/start63.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'start.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './grompp.mdp' into dict '{'action': 'Transfer', 'source': './grompp.mdp', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'grompp.mdp', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string './topol.top' into dict '{'action': 'Transfer', 'source': './topol.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'topol.top', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string '' into dict '{'action': 'Transfer', 'source': '', 'flags': ['CreateParents', 'SkipFailed'], 'target': '', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] Converting string 'out.gro > out63.gro' into dict '{'action': 'Transfer', 'source': 'out.gro', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'out63.gro', 'priority': 0}' | |
| 2014:10:15 09:13:52 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 244] (---------------------- Project balances for user vivek91 ----------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB140109 140 2015-04-04 | TG-MCB090174 95436 2015-09-30 | \n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 405] (------------------------ Disk quotas for user vivek91 -------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 2.5 5.0 49.38 128728 150000 85.82 |\n| /work 7.7 1024.0 0.75 155014 3000000 5.17 |\n-------------------------------------------------------------------------------\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 368] (\nTip 152 (See "module help tacc_tips" for features or how to disable)\n\n We perform a full backup of your $HOME directory every few months, and an incremental backup of the latest changes every few days. To recover a file submit a ticket. Please provide the name of the file(s), the date of most useful version, and an estimate of the time you lost the file.\n\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 311] (\n=======================================================================\n\n Support for ~/.profile_user will be removed on October 28, 2014.\n See /usr/local/startup_scripts/transition.txt for remedies.\n\n=======================================================================\n\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 21] (login4.stampede(1)$ $) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 1] ($) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0000 was unused for 0.0s | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> use: True -- new! | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: cd /work/02734/vivek91/radical.pilot.sandbox && mkdir -p '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb' ; cd '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb' | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 214] (cd /work/02734/vivek91/radical.pilot.sandbox && mkdir -p '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb' ; cd '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb'\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0000 was leased for 0.1s | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad231f4610> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] open master pty for [sh] [localhost] vivek: /usr/bin/env TERM=vt100 "/bin/bash" -i' | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad231f4590> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 13] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 13] [ 54] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ $) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51120b' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ $) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ $)2014:10:15 09:13:53 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51123a' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23281f50> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i2014:10:15 09:13:53 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51123c' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51121c' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 53] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 1] ($) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 1] ($) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: cd /home/vivek/grlsd-on-stampede | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 33] (cd /home/vivek/grlsd-on-stampede\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYShell del <saga.utils.pty_shell.PTYShell object at 0x7fad231f4610> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYProcess del <saga.utils.pty_process.PTYProcess object at 0x7fad23281f50> | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [DEBUG ] Copying bootstrapper 'file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh' to agent sandbox (sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/). | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [INFO ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm create pool for file://localhost/shell_file_adaptor_command_shell (<type 'str'>) (<radical.utils.lease_manager.LeaseManager object at 0x7fad41e49690>) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object for file://localhost/shell_file_adaptor_command_shell (0) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm create object for file://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad23302f10> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23302e90> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 53] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 1] ($) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 11] ($PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: cd /home/vivek/grlsd-on-stampede | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 33] (cd /home/vivek/grlsd-on-stampede\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0001 was unused for 0.0s | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302fd0> use: True -- new! | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh' | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 114] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh'\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [INFO ] file initialized (0)() | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm create pool for fork://localhost/shell_file_adaptor_command_shell (<type 'str'>) (<radical.utils.lease_manager.LeaseManager object at 0x7fad41e49690>) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object for fork://localhost/shell_file_adaptor_command_shell (0) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm create object for fork://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad23302c10> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23302b90> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 15] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511212' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51122f' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:53 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511206' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 15] [ 53] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 15] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 15] [ 1] ($) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 15] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 15] [ 1] ($) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: cd /home/vivek/grlsd-on-stampede | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 15] [ 33] (cd /home/vivek/grlsd-on-stampede\n) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0002 was unused for 0.0s | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302cd0> use: True -- new! | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> use: ok! | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0000 was unused for 0.3s | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23130210> | |
| 2014:10:15 09:13:53 24250 PilotLauncherWorker-1 saga.PTYProcess : [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh stampede.tacc.utexas.edu://work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51121e' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511227' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511208' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51122d' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511232' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511213' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511222' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511201' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51121d' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511228' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511219' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51123b' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511209' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51120a' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511214' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511230' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511231' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511229' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511238' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511235' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51122c' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511211' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51121b' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:54 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511207' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511226' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511216' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511205' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51120c' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51122b' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511200' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511220' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511239' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511233' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51120d' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51122e' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511202' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51121f' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511217' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51120f' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51120e' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 110] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\n) | |
| 2014:10:15 09:13:55 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 283] (To rebuild the collection, load the modules you wish then do:\n $ module save default\nIf you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511237' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511203' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511224' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511218' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511221' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba5111ff' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:55 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511204' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51122a' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511215' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511223' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511210' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba5111fe' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 160] (default_bootstrapper.sh 0% 0 0.0KB/s --:-- ETAdefault_bootstrapper.sh 100% 14KB 14.3KB/s 00:00 \n) | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511225' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511234' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba511236' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51121a' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba5111fd' state changed from 'New' to 'PendingInputStaging'. | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] PTYProcess del <saga.utils.pty_process.PTYProcess object at 0x7fad23130210> | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0000 was leased for 2.8s | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302fd0> for file://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0001 was leased for 2.9s | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302cd0> for fork://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0002 was leased for 2.8s | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] Copying agent 'file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py' to agent sandbox (sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/). | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.ShellFile : [INFO ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object for file://localhost/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302fd0> use: ok! | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0001 was unused for 0.0s | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py' | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 116] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py'\n) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.ShellFile : [INFO ] file initialized (0)() | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object for fork://localhost/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302cd0> use: ok! | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0002 was unused for 0.0s | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> use: ok! | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0000 was unused for 0.0s | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad2321ca10> | |
| 2014:10:15 09:13:56 24250 PilotLauncherWorker-1 saga.PTYProcess : [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py stampede.tacc.utexas.edu://work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/radical-pilot-agent.py | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] Creating ComputeUnit sandbox directory sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb//unit-543e73102330e05eba51120b. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] saga.fs.Directory ('sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb//unit-543e73102330e05eba51120b') | |
| 2014:10:15 09:13:56 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:56 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:13:56 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm create object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:56 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad23156290> | |
| 2014:10:15 09:13:56 24250 InputFileTransferWorker-1 saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23156350> | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vivek91@stampede.tacc.utexas.edu | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] Creating ComputeUnit sandbox directory sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb//unit-543e73102330e05eba51123a. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] saga.fs.Directory ('sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb//unit-543e73102330e05eba51123a') | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51120b' state changed from 'PendingInputStaging' to 'StagingInput'. | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 2397] (Last login: Wed Oct 15 08:13:5 ... __________________________\n\n) | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Wed Oct 15 08:13:51 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Last login: Wed Oct 15 08:13:51 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:56 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:13:56 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:13:57 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '543e73102330e05eba51123a' state changed from 'PendingInputStaging' to 'StagingInput'. | |
| 2014:10:15 09:13:58 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 198] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\nTo rebuild the collection, load the modules you wish then do:\n $ module save default\n) | |
| 2014:10:15 09:13:58 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 195] (If you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:13:58 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:13:58 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 404] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\nTo rebuild the collection, load the modules you wish then do:\n $ module save default\nIf you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:13:58 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:13:58 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 16] [ 160] (radical-pilot-agent-multicore.py 0% 0 0.0KB/s --:-- ETAradical-pilot-agent-multicore.py 100% 101KB 101.3KB/s 00:00 \n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 244] (---------------------- Project balances for user vivek91 ----------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB140109 140 2015-04-04 | TG-MCB090174 95436 2015-09-30 | \n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 405] (------------------------ Disk quotas for user vivek91 -------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 2.5 5.0 49.38 128728 150000 85.82 |\n| /work 7.7 1024.0 0.75 155017 3000000 5.17 |\n-------------------------------------------------------------------------------\n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 74] (\nTip 2 (See "module help tacc_tips" for features or how to disable)\n\n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 82] ( Use the command "du -sh" to see total disk usage for the current directory.\n\n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 311] (\n=======================================================================\n\n Support for ~/.profile_user will be removed on October 28, 2014.\n See /usr/local/startup_scripts/transition.txt for remedies.\n\n=======================================================================\n\n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 21] (login4.stampede(1)$ $) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:13:59 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] PTYProcess del <saga.utils.pty_process.PTYProcess object at 0x7fad2321ca10> | |
| 2014:10:15 09:13:59 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 1] ($) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-1 radical.utils : [ERROR ] lo.0003 was unused for 0.0s | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23156250> use: True -- new! | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: cd / && test -d '/' && cd '/'2014:10:15 09:13:59 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 32] (cd / && test -d '/' && cd '/'\n)2014:10:15 09:13:59 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (2) | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm create object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad23156c50> | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-2 saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23156f10> | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vivek91@stampede.tacc.utexas.edu | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] write: [ 16] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 2397] (Last login: Wed Oct 15 08:13:5 ... __________________________\n\n) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Wed Oct 15 08:13:57 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Last login: Wed Oct 15 08:13:57 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:13:59 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:13:59 radical.pilot.MainProcess: [DEBUG ] write: [ 16] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:14:00 radical.pilot.MainProcess: [INFO ] Scheduled ComputeUnits [] for execution on ComputePilot '543e73062330e05eba5111fb'. | |
| 2014:10:15 09:14:00 radical.pilot.MainProcess: [INFO ] 0 units remain unscheduled | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 404] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\nTo rebuild the collection, load the modules you wish then do:\n $ module save default\nIf you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 162] (---------------------- Project balances for user vivek91 ----------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 82] (| TG-MCB140109 140 2015-04-04 | TG-MCB090174 95436 2015-09-30 | \n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 405] (------------------------ Disk quotas for user vivek91 -------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 2.5 5.0 49.38 128728 150000 85.82 |\n| /work 7.7 1024.0 0.75 155017 3000000 5.17 |\n-------------------------------------------------------------------------------\n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 163] (\nTip 74 (See "module help tacc_tips" for features or how to disable)\n\n Want to know if two files are exactly the same use "cmp". It is faster than diff.\n\n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 311] (\n=======================================================================\n\n Support for ~/.profile_user will be removed on October 28, 2014.\n See /usr/local/startup_scripts/transition.txt for remedies.\n\n=======================================================================\n\n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 21] (login4.stampede(1)$ $) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] write: [ 16] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:14:01 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 1] ($) | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0004 was unused for 0.0s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad231562d0> use: True -- new! | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] run_sync: cd / && test -d '/' && cd '/' | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0000 was leased for 5.3s | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] write: [ 16] [ 32] (cd / && test -d '/' && cd '/'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad23156250> for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [ERROR ] lo.0003 was leased for 2.7s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] initialized directory (0)()2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302fd0> for file://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0001 was leased for 5.4s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad23014310>2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302cd0> for fork://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 radical.utils : [ERROR ] lo.0002 was leased for 5.4s2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] saga.job.Service ('slurm+ssh://stampede.tacc.utexas.edu/') | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad2321c550> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 19] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] Opening shell of type: ssh://stampede.tacc.utexas.edu | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad231f4990> | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 saga.SLURMJobService : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] read : [ 16] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad231562d0> for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0004 was leased for 0.1s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] initialized directory (0)() | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad231f4710> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 19] [ 53] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 19] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 19] [ 1] ($) | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad41938ed0> | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 vivek91@stampede.tacc.utexas.edu2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 19] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 19] [ 11] ($PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: cd /home/vivek/grlsd-on-stampede | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 19] [ 33] (cd /home/vivek/grlsd-on-stampede\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 19] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (3) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> use: ok! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [ERROR ] lo.0000 was unused for 0.1s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: cd / && mkdir -p '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/unit-543e73102330e05eba51120b' | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 123] (cd / && mkdir -p '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/unit-543e73102330e05eba51120b'\n) | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [ERROR ] lo.0000 was leased for 0.1s | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [INFO ] Processing input file transfers for ComputeUnit 543e73102330e05eba51120b | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] Transferring input file file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh -> sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb//unit-543e73102330e05eba51120b/run.sh | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh') | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object for file://localhost/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302fd0> use: ok! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [ERROR ] lo.0001 was unused for 0.3s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh' | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] write: [ 14] [ 118] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] read : [ 14] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)() | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object for fork://localhost/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23302cd0> use: ok! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [ERROR ] lo.0002 was unused for 0.3s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (3) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad417b8f10> use: ok! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 radical.utils : [ERROR ] lo.0000 was unused for 0.1s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.PTYProcess : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad22f81e90> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.PTYProcess : [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh stampede.tacc.utexas.edu://work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/unit-543e73102330e05eba51120b/run.sh | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 2397] (Last login: Wed Oct 15 08:13:5 ... __________________________\n\n) | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Wed Oct 15 08:13:59 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Last login: Wed Oct 15 08:13:59 2014 from ool-43571463.dyn.optonline.net | |
| ------------------------------------------------------------------------------ | |
| Welcome to the Stampede Supercomputer | |
| Texas Advanced Computing Center, The University of Texas at Austin | |
| ------------------------------------------------------------------------------ | |
| ** Unauthorized use/access is prohibited. ** | |
| If you log on to this computer system, you acknowledge your awareness | |
| of and concurrence with the UT Austin Acceptable Use Policy. The | |
| University will prosecute violators to the full extent of the law. | |
| TACC Usage Policies: | |
| http://www.tacc.utexas.edu/user-services/usage-policies/ | |
| ______________________________________________________________________________ | |
| Questions and Problem Reports: | |
| --> XD Projects: help@xsede.org (email) | |
| --> TACC Projects: portal.tacc.utexas.edu (web) | |
| Documentation: http://www.tacc.utexas.edu/user-services/user-guides/ | |
| User News: http://www.tacc.utexas.edu/user-services/user-news/ | |
| ______________________________________________________________________________ | |
| Welcome to Stampede, *please* read these important system notes: | |
| --> Stampede is currently running the SLURM resource manager to | |
| schedule all compute resources. Example SLURM job scripts are | |
| available on the system at /share/doc/slurm | |
| To run an interactive shell, issue: | |
| srun -p development -t 0:30:00 -n 32 --pty /bin/bash -l | |
| To submit a batch job, issue: sbatch job.mpi | |
| To show all queued jobs, issue: showq | |
| To kill a queued job, issue: scancel <jobId> | |
| ) | |
| 2014:10:15 09:14:02 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23302210> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 21] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 21] [ 53] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 21] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 21] [ 1] ($) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 21] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 21] [ 1] ($) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 21] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] run_sync: cd /home/vivek/grlsd-on-stampede | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 21] [ 33] (cd /home/vivek/grlsd-on-stampede\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 21] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (3) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23156250> use: ok! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0003 was unused for 0.5s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] run_sync: cd / && mkdir -p '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/unit-543e73102330e05eba51123a' | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 123] (cd / && mkdir -p '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/unit-543e73102330e05eba51123a'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-1 saga.PTYProcess : [DEBUG ] read : [ 20] [ 82] (mux_client_request_session: session request failed: Session open refused by peer\n) | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm release object | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm release object <radical.utils.lease_manager._LeaseObject object at 0x7fad23156250> for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0003 was leased for 0.1s | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [INFO ] Processing input file transfers for ComputeUnit 543e73102330e05eba51123a | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] Transferring input file file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh -> sftp://stampede.tacc.utexas.edu/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb//unit-543e73102330e05eba51123a/run.sh | |
| 2014:10:15 09:14:02 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh') | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [INFO ] init_instance file://localhost//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object for file://localhost/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm create object for file://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad23156850> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad23336890> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 22] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 22] [ 53] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 22] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 22] [ 1] ($) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 22] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 22] [ 1] ($) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 22] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] run_sync: cd /home/vivek/grlsd-on-stampede | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 22] [ 33] (cd /home/vivek/grlsd-on-stampede\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 22] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0005 was unused for 0.0s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23156810> use: True -- new! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh' | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 22] [ 118] (true; test -r '//home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 22] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [INFO ] file initialized (0)() | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object for fork://localhost/shell_file_adaptor_command_shell (1) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm create object for fork://localhost/shell_file_adaptor_command_shell | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x7fad22f81e10> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$ | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad22f81d50> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 23] [ 33] ( export PS1='$' ; set prompt='$'\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 23] [ 53] (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] Got initial shell prompt (5) (vivek@vivek-Lenovo-IdeaPad-Y480:~/grlsd-on-stampede$ ) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 23] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 23] [ 1] ($) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 23] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 23] [ 1] ($) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 23] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellFile : [DEBUG ] run_sync: cd /home/vivek/grlsd-on-stampede | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] write: [ 23] [ 33] (cd /home/vivek/grlsd-on-stampede\n) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.ShellDirectory : [DEBUG ] read : [ 23] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0006 was unused for 0.0s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad22f81f90> use: True -- new! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm check pool (['sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell', 'fork://localhost/shell_file_adaptor_command_shell', 'file://localhost/shell_file_adaptor_command_shell']) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object for sftp://stampede.tacc.utexas.edu/shell_file_adaptor_command_shell (3) | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [DEBUG ] lm lease object <radical.utils.lease_manager._LeaseObject object at 0x7fad23156250> use: ok! | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 radical.utils : [ERROR ] lo.0003 was unused for 0.2s | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.PTYProcess : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad22f41a10> | |
| 2014:10:15 09:14:02 24250 InputFileTransferWorker-2 saga.PTYProcess : [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 //home/vivek/devel/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/run.sh stampede.tacc.utexas.edu://work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb/unit-543e73102330e05eba51123a/run.sh | |
| 2014:10:15 09:14:03 24250 InputFileTransferWorker-2 saga.PTYProcess : [DEBUG ] read : [ 24] [ 82] (mux_client_request_session: session request failed: Session open refused by peer\n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 404] (\nLmod Warning: One or more modules in your default collection have changed: "cluster", "intel", "mvapich2".\nTo rebuild the collection, load the modules you wish then do:\n $ module save default\nIf you no longer want this module collection do:\n rm ~/.lmod.d/default\n\nFor more information execute 'module help' or see www.tacc.utexas.edu/tacc-projects/lmod/user-guide/loading-modules\n\n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 37] (Restoring modules to system default\n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 244] (---------------------- Project balances for user vivek91 ----------------------\n| Name Avail SUs Expires | Name Avail SUs Expires |\n| TG-MCB140109 140 2015-04-04 | TG-MCB090174 95436 2015-09-30 | \n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 405] (------------------------ Disk quotas for user vivek91 -------------------------\n| Disk Usage (GB) Limit %Used File Usage Limit %Used |\n| /home1 2.5 5.0 49.38 128728 150000 85.82 |\n| /work 7.7 1024.0 0.75 155019 3000000 5.17 |\n-------------------------------------------------------------------------------\n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 279] (\nTip 81 (See "module help tacc_tips" for features or how to disable)\n\n Want to compare 2 files? You can use diff.\n $ diff [options] file1 file2\n \n Note: You can use the option -w in the diff command to ignore the white space while performing the comparison.\n\n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 311] (\n=======================================================================\n\n Support for ~/.profile_user will be removed on October 28, 2014.\n See /usr/local/startup_scripts/transition.txt for remedies.\n\n=======================================================================\n\n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 21] (login4.stampede(1)$ $) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n) | |
| 2014:10:15 09:14:04 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 1] ($) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] got new shell prompt | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] Verifying existence of remote SLURM tools. | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which squeue | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 13] (which squeue\n) | |
| 2014:10:15 09:14:05 24250 InputFileTransferWorker-1 saga.PTYProcess : [DEBUG ] read : [ 20] [ 43] (vivek@stampede.tacc.utexas.edu's password: ) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 17] (/usr/bin/squeue\n) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which sbatch | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 13] (which sbatch\n) | |
| 2014:10:15 09:14:05 24250 InputFileTransferWorker-2 saga.PTYProcess : [DEBUG ] read : [ 24] [ 43] (vivek@stampede.tacc.utexas.edu's password: ) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 27] (/usr/bin/sbatch\nPROMPT-0->) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which scancel | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 14] (which scancel\n) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 28] (/usr/bin/scancel\nPROMPT-0->) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: which scontrol | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 15] (which scontrol\n) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 29] (/usr/bin/scontrol\nPROMPT-0->) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] got cmd prompt (0)(/usr/bin/scontrol | |
| ) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] No username provided in URL slurm+ssh://stampede.tacc.utexas.edu/, so we are going to find it with whoami | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: whoami | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 7] (whoami\n) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 19] (vivek91\nPROMPT-0->) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] Username detected as: vivek91 | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] Bootstrap command line: /bin/bash ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 543e73062330e05eba5111f9 -p 543e73062330e05eba5111fb -t 60 -d 10 -c 64 -v 0.20 -m ec2-184-72-89-141.compute-1.amazonaws.com:27017 -a : -i /opt/apps/python/epd/7.3.2/bin/python -e 'module purge' -e 'module load TACC' -e 'module load cluster' -e 'module load Linux' -e 'module load mvapich2' -e 'module load python/2.7.3-epd-7.3.2' -e 'module unload xalt' -e 'export TACC_KEEP_FILES=FALSE' -l SLURM -j SSH -k IBRUN "] | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] Submitting SAGA job with description: {'Queue': 'normal', 'Executable': '/bin/bash', 'WorkingDirectory': '/work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb', 'Project': 'TG-MCB090174', 'WallTimeLimit': 60, 'Arguments': ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 543e73062330e05eba5111f9 -p 543e73062330e05eba5111fb -t 60 -d 10 -c 64 -v 0.20 -m ec2-184-72-89-141.compute-1.amazonaws.com:27017 -a : -i /opt/apps/python/epd/7.3.2/bin/python -e 'module purge' -e 'module load TACC' -e 'module load cluster' -e 'module load Linux' -e 'module load mvapich2' -e 'module load python/2.7.3-epd-7.3.2' -e 'module unload xalt' -e 'export TACC_KEEP_FILES=FALSE' -l SLURM -j SSH -k IBRUN "], 'Error': 'AGENT.STDERR', 'Output': 'AGENT.STDOUT', 'TotalCPUCount': 64} | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [WARNING ] number_of_processes not specified in submitted SLURM job description -- defaulting to 1 per total_cpu_count! (64) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [INFO ] Creating working directory /work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [DEBUG ] run_sync: mkdir -p /work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 82] (mkdir -p /work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb\n) | |
| 2014:10:15 09:14:05 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 10] (PROMPT-0->) | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.SLURMJobService : [INFO ] SLURM script generated: | |
| #!/bin/sh | |
| #SBATCH -J "SAGAPythonSLURMJob" | |
| #SBATCH --ntasks=64 | |
| #SBATCH --cpus-per-task=1 | |
| #SBATCH -D /work/02734/vivek91/radical.pilot.sandbox/pilot-543e73062330e05eba5111fb | |
| #SBATCH -o AGENT.STDOUT | |
| #SBATCH -e AGENT.STDERR | |
| #SBATCH -t 01:00:00 | |
| #SBATCH -p normal | |
| #SBATCH -A TG-MCB090174 | |
| /bin/bash -l default_bootstrapper.sh -n radicalpilot -s 543e73062330e05eba5111f9 -p 543e73062330e05eba5111fb -t 60 -d 10 -c 64 -v 0.20 -m ec2-184-72-89-141.compute-1.amazonaws.com:27017 -a : -i /opt/apps/python/epd/7.3.2/bin/python -e 'module purge' -e 'module load TACC' -e 'module load cluster' -e 'module load Linux' -e 'module load mvapich2' -e 'module load python/2.7.3-epd-7.3.2' -e 'module unload xalt' -e 'export TACC_KEEP_FILES=FALSE' -l SLURM -j SSH -k IBRUN | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x7fad41717810> | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.PTYProcess : [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/scp -o IdentityFile=/home/vivek/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_vivek_%h_%p.vivek91.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 -2 /tmp/tmp_jVtlai.slurm stampede.tacc.utexas.edu://tmp/tmp_jVtlai.slurm | |
| 2014:10:15 09:14:05 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 25] [ 82] (mux_client_request_session: session request failed: Session open refused by peer\n) | |
| 2014:10:15 09:14:07 24250 PilotLauncherWorker-1 saga.PTYProcess : [DEBUG ] read : [ 25] [ 43] (vivek@stampede.tacc.utexas.edu's password: ) | |
| Traceback (most recent call last): | |
| File "/home/vivek/devel/bin/extasy", line 9, in <module> | |
| load_entry_point('radical.ensemblemd.extasy==0.1', 'console_scripts', 'extasy')() | |
| File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/runme.py", line 148, in main | |
| Simulator(umgr,RPconfig,Kconfig,i) | |
| File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Simulator/Gromacs/simulator.py", line 54, in Simulator | |
| umgr.wait_units() | |
| File "/home/vivek/devel/local/lib/python2.7/site-packages/radical/pilot/unit_manager.py", line 670, in wait_units | |
| time.sleep (0.1) | |
| KeyboardInterrupt |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment