Singularity image with anaconda + R

create.sh

git clone -b development https://www.github.com/singularityware/singularity.git
cd singularity
./autogen.sh
./configure --prefix=/usr/local
make
sudo make install

cd $HOME #or wherever you want :)
singularity create --size 8000 rpython.img
sudo singularity bootstrap rpython.img Singularity

# Then run
./rpython.img
null device 
          1 
           # test.jpg in $PWD

Singularity

From:rocker/ropensci
Bootstrap:docker

%environment
PATH=$PATH:/opt/anaconda3/bin
export PATH

%runscript
Rscript /code/runman.R


%post

apt-get update &&
apt-get -y install git bzip2
                 
wget https://repo.continuum.io/archive/Anaconda3-4.2.0-Linux-x86_64.sh
bash Anaconda3-4.2.0-Linux-x86_64.sh -b -p /opt/anaconda3
echo "PATH=/opt/anaconda3/bin:\$PATH" >> $HOME/.bashrc
echo "export PATH" >> $HOME/.bashrc
rm Anaconda3-4.2.0-Linux-x86_64.sh 
. $HOME/.bashrc

/opt/anaconda3/bin/conda install -c r r-essentials

mkdir /code


cat << EOF > /code/runman.R
jpeg("test.jpg") 
hist(c(1, 4, 1, 4, 5, 6, 7, 1, 3, 5, 2)) 
dev.off()
EOF