Skip to content

Instantly share code, notes, and snippets.

@vsoch

vsoch/exportRWeka.R

Last active Dec 29, 2015
Embed
What would you like to do?
Export a data matrix and associated demographic variables to arff file for import into Weka. All variables are assumed to be numeric, and columns are features (with column names the feature names), and rows data objects (with appropriate rownames). Missing values, currently set as -9999 and NA, are recoded as "?" Change this section (line 28) to…
exportRWeka = function(data,relation_name,outname) {
# Data is a data matrix, with features in columns, data in rows
# Edit the script to match whatever is the missing value for your data
# Rownames will be exported as well, and should be data labels
# relation_name is the name of the relation in Weka
# outname is the output file
# If you have a nominal outcome variable (eg, you want to color
# your data by a label in Weka) change the variable type as follows:
# @attribute groupVar {1,2}
# and select this variable in the dropdown next to "visualize all"
# Open output arff file for writing
filey = file(paste(outname,".arff",sep=''),"w")
# Name the analysis
write(paste("@relation \"",relation_name,"\"",sep=""), file=filey,append=TRUE)
# Define the rownames as the first variable
write("@attribute uid string", file=filey,append=TRUE)
# For each column data variable, define as attribute
for (c in 1:ncol(data)) {
colname = colnames(data)[c]
write(paste("@attribute",colname,"numeric",sep=" "),file=filey,append=TRUE)
}
# Now write data in rows, separated by commas, with behavioral data
write("@data",file=filey,append=TRUE)
for (d in 1:nrow(data)) {
dat = data[d,]
# Weka expects missing values to be ?
dat[which(de == -9999)] = '?'
dat[which(de == "NA")] = '?'
dat[which(is.na(dat))] = '?'
# Print the row of data, including the row.name
write.table(dat,append=TRUE,sep=',',file=filey,col.names=FALSE,quote=FALSE)
}
close(filey)
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
You can’t perform that action at this time.