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May 8, 2019 21:08
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An example of setting a custom environment variable already defined in the container
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Bootstrap: docker | |
From: centos:7 | |
# sudo singularity build lamps.simg Singularity | |
%environment | |
now=`date '+%Y_%m_%d'` | |
hostname=`hostname` | |
APPNAME="lammps" | |
RESULTS_DIR=${HOME}/${APPNAME} | |
LOG="${hostname}_${APPNAME}_${now}" | |
RESULTS="${hostname}_${APPNAME}_${now}.results" | |
SYSCONFIG="${hostname}_${APPNAME}_${now}.sysconfig" | |
APPINFO="${hostname}_${APPNAME}_${now}.appinfo" | |
export APPNAME LOG RESULTS SYSCONFIG APPINFO now hostname RESULTS_DIR | |
%apprun lammps | |
echo "${SCIF_APPNAME} is running." | |
WORKDIR=${SCIF_APPROOT} | |
if [ -n "$CUSTOM_RESULTS_DIR" ]; then | |
RESULTS_DIR=$CUSTOM_RESULTS_DIR | |
else | |
RESULTS_DIR=${HOME}/${APPNAME} | |
fi | |
if [ ! -x "$RESULTS_DIR" ]; then | |
mkdir -p $RESULTS_DIR | |
fi | |
cd $WORKDIR | |
echo "Single node Output file is $RESULTS and log is $LOG and results dir is $RESULTS_DIR" |tee $RESULTS_DIR/$RESULTS | |
%post | |
yum install -y sudo wget vi which | |
yum install -y hostname lscpu uptime redhat-lsb |
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