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// CSV file can be downloaded here: | |
// https://wiki.nci.nih.gov/download/attachments/147193864/GI50.zip?version=2&modificationDate=1649214698000&api=v2 | |
LOAD CSV WITH HEADERS FROM 'file:///GI50.csv' AS row | |
MERGE (chem:Chemical {nsc: toInteger(row.NSC)}) | |
MERGE (cell:CellLine {name: row.CELL_NAME}) | |
MERGE (dis:Disease {name: row.PANEL_NAME}) | |
WITH chem, cell, dis, row | |
MERGE (chem)-[:GI50 {concentration: row.AVERAGE, research: "NCI60", unit: row.CONCENTRATION_UNIT, experiment_id: row.EXPID, count: row.COUNT}]->(cell) | |
MERGE (cell)-[:CELL_LINE_OF]->(dis); |
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#%% | |
import gzip | |
import os | |
import urllib.request | |
from py2neo import Graph | |
temp_dir = "temp" | |
os.makedirs(temp_dir, exist_ok=True) |