Tom Nijhof wagenrace
😼
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| // CSV file can be downloaded here: | |
| // https://wiki.nci.nih.gov/download/attachments/147193864/GI50.zip?version=2&modificationDate=1649214698000&api=v2 | |
| LOAD CSV WITH HEADERS FROM 'file:///GI50.csv' AS row | |
| MERGE (chem:Chemical {nsc: toInteger(row.NSC)}) | |
| MERGE (cell:CellLine {name: row.CELL_NAME}) | |
| MERGE (dis:Disease {name: row.PANEL_NAME}) | |
| WITH chem, cell, dis, row | |
| MERGE (chem)-[:GI50 {concentration: row.AVERAGE, research: "NCI60", unit: row.CONCENTRATION_UNIT, experiment_id: row.EXPID, count: row.COUNT}]->(cell) | |
| MERGE (cell)-[:CELL_LINE_OF]->(dis); |
wagenrace
/ pubchem2neo4j.py
Created
February 24, 2022 21:26
Adding synonimes and components to neo4j with python
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| #%% | |
| import gzip | |
| import os | |
| import urllib.request | |
| from py2neo import Graph | |
| temp_dir = "temp" | |
| os.makedirs(temp_dir, exist_ok=True) |