Get sample attributes for an ENA sample

sample_attributes_from_ena.sh

sampleAttributes() { 
  curl -s "https://www.ebi.ac.uk/ena/data/view/$1&display=xml " \
  | perl -MXML::LibXML -e '
  for my $attr (XML::LibXML->load_xml(string => do {local $/ ; <> }) -> findnodes("./ROOT/SAMPLE/SAMPLE_ATTRIBUTES/*")) {
    print $attr->findvalue("./TAG") . "\t" . $attr->findvalue("./VALUE"). "\n"  
  }  ' 
}


sampleAttributes SRS1334254

cultivar        CCN51
dev_stage       Adult tree
geo_loc_name    Ecuador: local selection
tissue  mix Leaf-flower
BioSampleModel  Plant
ENA-SPOT-COUNT  14224288
ENA-BASE-COUNT  2844857600
ENA-FIRST-PUBLIC        2016-03-11
ENA-LAST-UPDATE 2016-03-14