Created
June 1, 2016 04:51
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package list for conda
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# This file may be used to create an environment using: | |
# $ conda create --name <env> --file <this file> | |
# platform: linux-64 | |
backports=1.0=py27_0 | |
backports_abc=0.4=py27_0 | |
bamtools=2.4.0=3 | |
bcftools=1.3=0 | |
bedops=2.4.19=0 | |
bedtools=2.25.0=1 | |
bioconductor-annotationdbi=1.32.3=0 | |
bioconductor-biobase=2.30.0=0 | |
bioconductor-biocgenerics=0.16.1=r3.2.2_0 | |
bioconductor-biomart=2.26.1=r3.2.2_0 | |
bioconductor-iranges=2.4.8=0 | |
bioconductor-s4vectors=0.8.11=0 | |
biopython=1.66=np111py27_0 | |
blist=1.3.6=py27_0 | |
bowtie2=2.2.8=py27_2 | |
bwa=0.7.13=1 | |
ca-certificates=2016.2.28=0 | |
cairo=1.12.18=1 | |
conda=4.0.7=py27_0 | |
conda-env=2.4.5=py27_0 | |
configparser=3.5.0b2=py27_1 | |
curl=7.49.0=0 | |
cycler=0.10.0=py27_0 | |
cython=0.24=py27_0 | |
datamash=1.1.0=0 | |
decorator=4.0.9=py27_0 | |
entrypoints=0.2=py27_1 | |
fastqc=0.11.5=1 | |
flash=1.2.11=0 | |
fontconfig=2.11.1=2 | |
freetype=2.6.3=0 | |
functools32=3.2.3.2=py27_0 | |
get_terminal_size=1.0.0=py27_0 | |
glib=2.43.0=2 | |
gsl=1.16=1 | |
harfbuzz=0.9.39=0 | |
hisat2=2.0.4=py27_0 | |
htslib=1.3=1 | |
icu=56.1=2 | |
ipykernel=4.3.1=py27_0 | |
ipython=4.2.0=py27_0 | |
ipython_genutils=0.1.0=py27_0 | |
ipywidgets=4.1.1=py27_0 | |
java-jdk=8.0.45=0 | |
jbig=2.1=0 | |
jinja2=2.8=py27_1 | |
jpeg=8d=0 | |
jsonschema=2.5.1=py27_0 | |
jupyter=1.0.0=py27_2 | |
jupyter_client=4.2.2=py27_0 | |
jupyter_console=4.1.1=py27_0 | |
jupyter_core=4.1.0=py27_0 | |
libevent=2.0.21=0 | |
libffi=3.2.1=0 | |
libgcc=5.2.0=0 | |
libgfortran=3.0.0=1 | |
libiconv=1.14=1 | |
libpng=1.6.21=1 | |
libsodium=1.0.10=0 | |
libtiff=4.0.6=0 | |
libxml2=2.9.3=0 | |
markupsafe=0.23=py27_2 | |
matplotlib=2.0.0b1=np111py27_1 | |
mistune=0.7.2=py27_0 | |
mkl=11.3.3=0 | |
mysql-python=1.2.5=py27_0 | |
nbconvert=4.2.0=py27_0 | |
nbformat=4.0.1=py27_0 | |
ncurses=5.9=4 | |
nlopt=2.4.2=1 | |
notebook=4.2.0=py27_0 | |
numpy=1.11.0=py27_1 | |
openblas=0.2.14=0 | |
openssl=1.0.2h=0 | |
pandas=0.18.1=np111py27_0 | |
pango=1.39.0=0 | |
parallel=20150922=0 | |
path.py=8.2.1=py27_0 | |
patsy=0.4.1=py27_0 | |
pcre=8.31=0 | |
perl-threaded=5.22.0=10 | |
pexpect=4.0.1=py27_0 | |
picard=2.3.0=0 | |
pickleshare=0.5=py27_0 | |
pip=8.1.1=py27_1 | |
pixman=0.32.6=0 | |
ptyprocess=0.5=py27_0 | |
pybedtools=0.7.7=py27_1 | |
pybigwig=0.2.8=py27_0 | |
pycairo=1.10.0=py27_0 | |
pycosat=0.6.1=py27_0 | |
pycrypto=2.6.1=py27_0 | |
pyfaidx=0.4.7.1=py27_0 | |
pygments=2.1.3=py27_0 | |
pyparsing=2.1.4=py27_0 | |
pyqt=4.11.4=py27_1 | |
pysam=0.9.0=py27_1 | |
python=2.7.11=0 | |
python-dateutil=2.5.3=py27_0 | |
pytz=2016.4=py27_0 | |
pyyaml=3.11=py27_1 | |
pyzmq=15.2.0=py27_1 | |
qt=4.8.7=1 | |
qtconsole=4.2.1=py27_0 | |
r=3.2.2=0 | |
r-assertthat=0.1=r3.2.2_1a | |
r-base=3.2.2=0 | |
r-bh=1.58.0_1=r3.2.2_0a | |
r-bitops=1.0_6=r3.2.2_1a | |
r-boot=1.3_17=r3.2.2_0a | |
r-brew=1.0_6=r3.2.2_1a | |
r-car=2.1_0=r3.2.2_0a | |
r-caret=6.0_62=r3.2.2_0a | |
r-class=7.3_14=r3.2.2_0a | |
r-cluster=2.0.3=r3.2.2_0a | |
r-codetools=0.2_14=r3.2.2_0a | |
r-colorspace=1.2_6=r3.2.2_0a | |
r-curl=0.9.4=r3.2.2_0a | |
r-dbi=0.3.1=r3.2.2_2a | |
r-devtools=1.9.1=r3.2.2_0a | |
r-dichromat=2.0_0=r3.2.2_2a | |
r-digest=0.6.9=r3.2.2_0 | |
r-dplyr=0.4.3=r3.2.2_0a | |
r-evaluate=0.8=r3.2.2_0a | |
r-foreach=1.4.3=r3.2.2_0a | |
r-foreign=0.8_66=r3.2.2_0a | |
r-ggplot2=2.1.0=r3.2.2_0 | |
r-git2r=0.11.0=r3.2.2_0a | |
r-gtable=0.1.2=r3.2.2_2a | |
r-httr=1.0.0=r3.2.2_0a | |
r-iterators=1.0.8=r3.2.2_0a | |
r-jsonlite=0.9.19=r3.2.2_0 | |
r-kernsmooth=2.23_15=r3.2.2_0a | |
r-labeling=0.3=r3.2.2_1a | |
r-lattice=0.20_33=r3.2.2_0a | |
r-lazyeval=0.1.10=r3.2.2_2a | |
r-lme4=1.1_10=r3.2.2_0a | |
r-magrittr=1.5=r3.2.2_1a | |
r-mass=7.3_45=r3.2.2_0a | |
r-matrix=1.2_2=r3.2.2_0a | |
r-matrixmodels=0.4_1=r3.2.2_0a | |
r-memoise=0.2.1=r3.2.2_1a | |
r-mgcv=1.8_9=r3.2.2_0a | |
r-mime=0.4=r3.2.2_0a | |
r-minqa=1.2.4=r3.2.2_1a | |
r-munsell=0.4.2=r3.2.2_1a | |
r-nlme=3.1_122=r3.2.2_0a | |
r-nloptr=1.0.4=r3.2.2_1a | |
r-nnet=7.3_11=r3.2.2_0a | |
r-pbkrtest=0.4_2=r3.2.2_2a | |
r-plyr=1.8.3=r3.2.2_0a | |
r-quantreg=5.19=r3.2.2_0a | |
r-r6=2.1.1=r3.2.2_0a | |
r-rcolorbrewer=1.1_2=r3.2.2_2a | |
r-rcpp=0.12.2=r3.2.2_0a | |
r-rcppeigen=0.3.2.5.1=r3.2.2_0a | |
r-rcurl=1.95_4.7=r3.2.2_0a | |
r-recommended=3.2.2=r3.2.2_0 | |
r-reshape2=1.4.1=r3.2.2_1a | |
r-roxygen2=5.0.1=r3.2.2_0a | |
r-rpart=4.1_10=r3.2.2_0a | |
r-rsqlite=1.0.0=r3.2.2_1a | |
r-rstudioapi=0.3.1=r3.2.2_0a | |
r-rversions=1.0.2=r3.2.2_0a | |
r-scales=0.3.0=r3.2.2_0a | |
r-sparsem=1.7=r3.2.2_0a | |
r-spatial=7.3_11=r3.2.2_0a | |
r-stringi=1.0_1=r3.2.2_0a | |
r-stringr=1.0.0=r3.2.2_0a | |
r-survival=2.38_3=r3.2.2_0a | |
r-tidyr=0.3.1=r3.2.2_0a | |
r-whisker=0.3_2=r3.2.2_1a | |
r-xml=3.98_1.3=r3.2.2_0a | |
r-xml2=0.1.2=r3.2.2_0a | |
readline=6.2=2 | |
requests=2.10.0=py27_0 | |
rseqc=2.6.2=0 | |
samtools=1.3.1=1 | |
scikit-learn=0.17.1=np111py27_1 | |
scipy=0.17.1=np111py27_0 | |
seaborn=0.7.0=py27_0 | |
seqtk=r93=0 | |
setuptools=21.2.1=py27_0 | |
simplegeneric=0.8.1=py27_0 | |
singledispatch=3.4.0.3=py27_1 | |
sip=4.16.9=py27_0 | |
six=1.10.0=py27_0 | |
sqlite=3.13.0=0 | |
ssl_match_hostname=3.4.0.2=py27_1 | |
statsmodels=0.6.1=np111py27_1 | |
system=5.8=2 | |
terminado=0.5=py27_1 | |
tk=8.5.18=0 | |
tmux=2.1=1 | |
tornado=4.3=py27_1 | |
traitlets=4.2.1=py27_0 | |
trimmomatic=0.36=3 | |
wheel=0.29.0=py27_0 | |
xz=5.2.2=0 | |
yaml=0.1.6=0 | |
zeromq=4.1.4=0 | |
zlib=1.2.8=3 |
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