wendao

//
// JavaScript routines for elcomp.htm
// by Jef Rozenski (1999)
// jef.rozenski@rna.pharm.utah.edu
// last modification : 11/03/2014
//
window.defaultStatus = '';
var i,j,mw,sm,ma,dr,toler,offs,hits,hitmass;
var elem = "CHNOSPXYZ";
var maM = "monoisotopic mass";

wendao

#test locally
boinc_test boinc_submit.txt
/work/boinc/bin/run_test_rah.pl run.fold.boinc.job

#submit small cases
~boinc/bin/ralph_submit boinc_submit.txt
~boinc/bin/boinc_submit boinc_submit.txt

#check success rate

wendao

~/rosetta/bin/pdb_to_map.default.linuxgccrelease -in:file:s 4d0m_tetramer.pdb.clean.pdb -edensity:mapreso 10.0 -edensity:grid_spacing 2.0 -in:file:centroid_input  -mapfile 4d0m_tetramer.map

hhblits -o /dev/null -i 1v0eA_frag.fasta -oa3m 1v0eA_frag.a3m -d /lab/databases/hhsuite/uniprot/un    iprot20_2013_03/uniprot20_2013_03 -cpu 20

hhblits -o /dev/null -i to_threadon_1v0eA_frag.fasta -oa3m to_threadon_1v0eA_frag.a3m -d /lab/data       bases/hhsuite/uniprot/uniprot20_2013_03/uniprot20_2013_03 -cpu 20

hhalign -i to_threadon_1v0eA_frag.a3m -t 1v0eA_frag.a3m  -glob -o to_threadon_1v0eA_frag.hha

~krypton/scripts/hhs2partial_thread.pl -hhs to_threadon_1v0eA_frag.hha -fas 1v0eA_frag.fasta -name        1v0eA_1

wendao

git commit #本地操作，可多次进行

git branch newbranch #建立一个新的branch
git checkout newbranch #切换branch

git merge oldbranch #合并另一个分支

git rebase oldbranch #直接跳转过去（和merge区别:改变父亲）

git revert HEAD^