gistfile1.txt

/arrow/r /
* checking for file './DESCRIPTION' ... OK
* preparing 'arrow':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running 'cleanup'
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'arrow_0.0.0.9000.tar.gz'

* installing to library '/usr/local/lib/R/site-library'
* installing *source* package 'arrow' ...
Found pkg-config cflags and libs!
PKG_CFLAGS=-I/opt/conda/include
PKG_LIBS=-L/opt/conda/lib -larrow
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arraydata.cpp -o arraydata.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c buffer.cpp -o buffer.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c column.cpp -o column.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datatype.cpp -o datatype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c field.cpp -o field.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.cpp -o io.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memorypool.cpp -o memorypool.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c message.cpp -o message.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatch.cpp -o recordbatch.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c symbols.cpp -o symbols.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/opt/conda/include -I"/usr/local/lib/R/site-library/Rcpp/include"   -D_GLIBCXX_USE_CXX11_ABI=0 -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c table.cpp -o table.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o arrow.so RcppExports.o array.o arraydata.o buffer.o chunkedarray.o column.o datatype.o field.o io.o memorypool.o message.o recordbatch.o recordbatchreader.o recordbatchwriter.o symbols.o table.o -L/opt/conda/lib -larrow -Wl,-rpath,/usr/local/lib -L/usr/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/arrow/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (arrow)
* using log directory '/arrow/r/arrow.Rcheck'
* using R version 3.5.1 (2018-07-02)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: ASCII
* using option '--as-cran'
* checking for file 'arrow/DESCRIPTION' ... OK
* this is package 'arrow' version '0.0.0.9000'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... WARNING
Maintainer: 'Romain Fran<U+00E7>ois <romain@rstudio.com>'

New submission

Version contains large components (0.0.0.9000)

Unknown, possibly mis-spelled, fields in DESCRIPTION:
  'Remotes'

Strong dependencies not in mainstream repositories:
  vctrs
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking: 'lubridate' 'hms'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'arrow' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.5Mb
  sub-directories of 1Mb or more:
    R      1.6Mb
    libs   7.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Files 'README.md' or 'NEWS.md' cannot be checked without 'pandoc' being installed.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
  OS reports request to set locale to "en_US.UTF-8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  print.integer64 str.integer64
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
  src/Makevars
  src/Makevars.in
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section 'Writing portable packages' in
the 'Writing R Extensions' manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... WARNING
Compilation used the following non-portable flag(s):
  '-Wdate-time' '-Werror=format-security' '-Wformat'
* checking compiled code ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  == testthat results  ===========================================================
  OK: 472 SKIPPED: 0 FAILED: 16
  1. Error: array supports POSIXct (ARROW-3340) (@test-Array.R#231) 
  2. Error: array supports integer64 (@test-Array.R#247) 
  3. Error: array supports difftime (@test-Array.R#261) 
  4. Error: RecordBatch with 0 rows are supported (@test-RecordBatch.R#111) 
  5. Error: read_record_batch handles various streams (ARROW-3450, ARROW-3505) (@test-RecordBatch.R#124) 
  6. Error: read_record_batch can handle Message, Schema parameters (ARROW-3499) (@test-RecordBatch.R#162) 
  7. Error: read_table handles various input streams (ARROW-3450, ARROW-3505) (@test-Table.R#27) 
  8. Error: ChunkedArray supports POSIXct (ARROW-3716) (@test-chunkedarray.R#139) 
  9. Error: ChunkedArray supports difftime (@test-chunkedarray.R#155) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
* checking PDF version of manual without hyperrefs or index ... ERROR
Re-running with no redirection of stdout/stderr.
Hmm ... looks like a package
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  pdflatex is not available
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  pdflatex is not available
Error in running tools::texi2pdf()
You may want to clean up by 'rm -Rf /tmp/Rtmpf4agRr/Rd2pdf159f414902b5'
* DONE

Status: 2 ERRORs, 5 WARNINGs, 4 NOTEs
See
  '/arrow/r/arrow.Rcheck/00check.log'
for details.