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COVID-19 hacking
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| require(tidyverse) | |
| original.data <- read_csv("https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_time_series/time_series_19-covid-Confirmed.csv") | |
| # combined data with simple state column | |
| data <- original.data %>% | |
| filter(`Country/Region` == 'US') %>% | |
| mutate(State = sub(".*,\ ", "", `Province/State`)) %>% | |
| rowwise() %>% | |
| mutate(State = ifelse(nchar(State) == 2, state.name[grep(State, state.abb)], `Province/State`)) %>% | |
| ungroup() %>% | |
| select_if(function(x) {is.character(x) || sum(x) != 0}) %>% | |
| select(State, c(1:"State")) %>% | |
| group_by(State) %>% | |
| summarize_at(vars(-`Province/State`, -`Country/Region`, -Lat, -Long), ~sum(.)) %>% | |
| ungroup() %>% | |
| mutate(sumConfirmed = rowSums((.)[-c(1:4)])) %>% | |
| select(c(State, sumConfirmed), everything()) | |
| # simple confirmed cases plot, top 10 states | |
| data %>% | |
| arrange(desc(sumConfirmed)) %>% | |
| top_n(10) %>% | |
| select(-sumConfirmed) %>% | |
| group_by(State) %>% | |
| gather(key = "date", value="nConfirmed", -c(State)) %>% | |
| mutate(date = as.Date(date, format="%m/%d/%y")) %>% | |
| mutate(log.nConfirmed = log(nConfirmed)) %>% | |
| ggplot(aes(x=date, y=nConfirmed, color=State)) + | |
| geom_line() |
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| { | |
| "objectIdFieldName": "OBJECTID", | |
| "uniqueIdField": { | |
| "name": "OBJECTID", | |
| "isSystemMaintained": true | |
| }, | |
| "globalIdFieldName": "", | |
| "geometryType": "esriGeometryPoint", | |
| "spatialReference": { | |
| "wkid": 102100, | |
| "latestWkid": 3857 | |
| }, | |
| "fields": [ | |
| { | |
| "name": "OBJECTID", | |
| "type": "esriFieldTypeOID", | |
| "alias": "OBJECTID", | |
| "sqlType": "sqlTypeOther", | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Country_Region", | |
| "type": "esriFieldTypeString", | |
| "alias": "Country_Region", | |
| "sqlType": "sqlTypeOther", | |
| "length": 8000, | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Last_Update", | |
| "type": "esriFieldTypeDate", | |
| "alias": "Last_Update", | |
| "sqlType": "sqlTypeOther", | |
| "length": 8, | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Lat", | |
| "type": "esriFieldTypeDouble", | |
| "alias": "Lat", | |
| "sqlType": "sqlTypeOther", | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Long_", | |
| "type": "esriFieldTypeDouble", | |
| "alias": "Long", | |
| "sqlType": "sqlTypeOther", | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Confirmed", | |
| "type": "esriFieldTypeInteger", | |
| "alias": "Confirmed", | |
| "sqlType": "sqlTypeOther", | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Deaths", | |
| "type": "esriFieldTypeInteger", | |
| "alias": "Deaths", | |
| "sqlType": "sqlTypeOther", | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Recovered", | |
| "type": "esriFieldTypeInteger", | |
| "alias": "Recovered", | |
| "sqlType": "sqlTypeOther", | |
| "domain": null, | |
| "defaultValue": null | |
| }, | |
| { | |
| "name": "Active", | |
| "type": "esriFieldTypeInteger", | |
| "alias": "Active", | |
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| "Active": 7253 | |
| } | |
| }, | |
| { | |
| "attributes": { | |
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| "Active": 7035 | |
| } | |
| }, | |
| { | |
| "attributes": { | |
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