Created
November 1, 2015 22:01
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wstBacteriaScatter
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| type | commonName | latinName | logGram | logHour | Mb | MbGroup | MbNumericalGroup | |
|---|---|---|---|---|---|---|---|---|
| Bacteria | Haemophilus influenza | Haemophilus influenza | -13.0 | -0.2 | 1.8 | 1–10 | 1 | |
| Bacteria | Pelagibacter ubique | Pelagibacter ubique | -14.0 | -1.7 | 1.3 | 1–10 | 1 | |
| Bacteria | Prochlorococcus marinus | Prochlorococcus marinus | -13.0 | -1.8 | 2.7 | 1–10 | 1 | |
| Bacteria | E. coli | Escherichia coli | -12.0 | -0.4 | 4.6 | 1–10 | 1 | |
| Bacteria | Mycobacterium tuberculosis | Mycobacterium tuberculosis | -12.6 | -1.4 | 4.4 | 1–10 | 1 | |
| Bacteria | Myxococcus xanthus | Myxococcus xanthus | -11.0 | 0.6 | 9.1 | 1–10 | 1 | |
| Archaea | Sulfolobus islandicus | Sulfolobus islandicus | -12.3 | 1.6 | 2.9 | 1–10 | 1 | |
| Eukaryota | bakers' yeast | Saccharomyces cerevisiae | -9.2 | 0.3 | 12 | 11–100 | 2 | |
| Eukaryota | Chlamydomonas | Chlamydomonas reinhardtii | -9.3 | 1.0 | 120 | 101–1000 | 3 | |
| Eukaryota | slime mold | Dictyostelium discoideum | -4.6 | 0.6 | 34 | 11–100 | 2 | |
| Eukaryota | Paramecium | Paramecium tetraurelia | -7.0 | -0.3 | 72 | 11–100 | 2 | |
| Insects | nematode | Caenorhabditis elegans | -5.5 | 2.0 | 103 | 101–1000 | 3 | |
| Insects | fruit fly | Drosophila melanogaster | -3.3 | 2.4 | 165 | 101–1000 | 3 | |
| Insects | mosquito | Anopheles gambiae | -2.8 | 2.6 | 278 | 101–1000 | 3 | |
| Insects | honey bee | Apis mellifera | -1.1 | 3.9 | 236 | 101–1000 | 3 | |
| Insects | flour beetle | Triboleum castaneum | -2.7 | 2.9 | 204 | 101–1000 | 3 | |
| Vertebrates | marbled lungfish | Protopterus aethiopicus | 4.2 | 4.5 | 130000 | 10000+ | 5 | |
| Vertebrates | zebrafish | Danio rerio | -0.0 | 3.3 | 1412 | 1001–10000 | 4 | |
| Vertebrates | Western clawed frog | Xenopus tropicalis | 0.7 | 3.6 | 1438 | 1001–10000 | 4 | |
| Vertebrates | mouse | Mus musculus | 1.5 | 2.4 | 2700 | 1001–10000 | 4 | |
| Vertebrates | chicken | Gallus gallus | 3.0 | 3.8 | 1047 | 1001–10000 | 4 | |
| Vertebrates | human | Homo sapiens | 4.8 | 5.3 | 3200 | 1001–10000 | 4 |
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| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <meta charset="UTF-8"> | |
| <title>The amazing properties of bacteria</title> | |
| <script src="//d3js.org/d3.v3.min.js" charset="utf-8"></script> | |
| <style type="text/css"> | |
| body { | |
| margin: 0; | |
| background-color: lightGray; | |
| font-family: Georgia, Times, serif; | |
| } | |
| #container { | |
| width: 800px; | |
| margin-left: auto; | |
| margin-right: auto; | |
| background-color: #FFF; | |
| margin-top: 50px; | |
| box-shadow: 3px 3px 5px 6px #bbb; | |
| } | |
| h2 { | |
| text-align: center; | |
| font-size: 20px; | |
| font-weight: bold; | |
| padding-top: 15px; | |
| } | |
| } | |
| </style> | |
| </head> | |
| <body> | |
| <div id="container"> | |
| <h2>The amazing properties of bacteria</h2> | |
| <section id="chart"></section> | |
| </div> | |
| <script type="text/javascript"> | |
| var w = 800; | |
| var h = 600; | |
| var padding = [50, 50, 50, 50]; | |
| var widthScale = d3.scale.linear() | |
| .range([ padding[3], w - padding[1] - padding[3] ]); | |
| var heightScale = d3.scale.linear() | |
| .range([ h - padding[2] - padding[0], padding[0] ]); | |
| var svg = d3.select("#chart") | |
| .append("svg") | |
| .attr("width", w) | |
| .attr("height", h); | |
| d3.csv("bacteria.csv", function(data) { | |
| widthScale.domain([ | |
| d3.min(data, function(d) { | |
| return +d.logHour; | |
| }) | |
| , | |
| d3.max(data, function(d) { | |
| return +d.logHour; | |
| }) ]); | |
| heightScale.domain([ d3.min(data, function(d) { | |
| return +d.logGram; | |
| }) | |
| , | |
| d3.max(data, function(d) { | |
| return +d.logGram; | |
| }) ]); | |
| var groups = svg.selectAll ("g") | |
| .data(data) | |
| .enter() | |
| .append("g") | |
| .attr("class", "point"); | |
| var points = groups.append("circle") | |
| .attr("cx", function(d) { | |
| return widthScale(d.logHour); | |
| }) | |
| .attr("cy", function(d) { | |
| return heightScale(d.logGram); | |
| }) | |
| .attr("r", 0) | |
| .attr("fill", function(d) { | |
| // console.log(d.type); | |
| if(d.type == "Bacteria") { | |
| return "#B34B79" ; | |
| } else if(d.type == "Archaea") { | |
| return "#C37D15" ; | |
| } else if(d.type == "Eukaryota") { | |
| return "#A9BF31" ; | |
| } else if(d.type == "Insects") { | |
| return "#5F331A" ; | |
| } else if(d.type == "Vertebrates") { | |
| return "#41A9B1" ; | |
| } else { | |
| return "#F00" ; | |
| } | |
| }) | |
| points.transition() | |
| .delay(function(d, i) { | |
| return i * 30; | |
| }) | |
| .duration(1000) | |
| .attr("r", function(d) { | |
| return +d.MbNumericalGroup * 3 + 2 ; | |
| }); | |
| // findRingsNo = function(d) { | |
| // if(d.type == "Archaea") { | |
| // return 1; | |
| // } else if(d.type == "Eukaryota") { | |
| // return 2; | |
| // } else if(d.type == "Insects") { | |
| // return 3; | |
| // } else if(d.type == "Vertebrates") { | |
| // return 4; | |
| // } else { | |
| // return 0; | |
| // }} | |
| // var ringsNo = findRingsNo(d); | |
| // console.log(ringsNo); | |
| var rings = groups.append("circle") | |
| .attr("cx", function(d) { | |
| return widthScale(d.logHour); | |
| }) | |
| .attr("cy", function(d) { | |
| return heightScale(d.logGram); | |
| }) | |
| .attr("r", 6) | |
| .attr("stroke", "#FFF") | |
| .attr("opacity", function(d) { | |
| if(d.MbNumericalGroup < 2) { | |
| return(0); | |
| } else { | |
| return(1); | |
| } | |
| }) | |
| .attr("fill", "none"); | |
| var rings = groups.append("circle") | |
| .attr("cx", function(d) { | |
| return widthScale(d.logHour); | |
| }) | |
| .attr("cy", function(d) { | |
| return heightScale(d.logGram); | |
| }) | |
| .attr("r", 9) | |
| .attr("stroke", "#FFF") | |
| .attr("opacity", function(d) { | |
| if(d.MbNumericalGroup < 3) { | |
| return(0); | |
| } else { | |
| return(1); | |
| } | |
| }) | |
| .attr("fill", "none"); | |
| var rings = groups.append("circle") | |
| .attr("cx", function(d) { | |
| return widthScale(d.logHour); | |
| }) | |
| .attr("cy", function(d) { | |
| return heightScale(d.logGram); | |
| }) | |
| .attr("r", 12) | |
| .attr("stroke", "#FFF") | |
| .attr("opacity", function(d) { | |
| if(d.MbNumericalGroup < 4) { | |
| return(0); | |
| } else { | |
| return(1); | |
| } | |
| }) | |
| .attr("fill", "none"); | |
| var rings = groups.append("circle") | |
| .attr("cx", function(d) { | |
| return widthScale(d.logHour); | |
| }) | |
| .attr("cy", function(d) { | |
| return heightScale(d.logGram); | |
| }) | |
| .attr("r", 15) | |
| .attr("stroke", "#FFF") | |
| .attr("opacity", function(d) { | |
| if(d.MbNumericalGroup < 5) { | |
| return(0); | |
| } else { | |
| return(1); | |
| } | |
| }) | |
| .attr("fill", "none"); | |
| // svg.append("g"); | |
| }); | |
| </script> | |
| </body> | |
| </html> |
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