willfurnass

#!/usr/bin/env python

# A test of whether Ruffus can be used to submit jobs to a cluster using the
# DRMAA API, sharing the DRMAA session between threads to allow multiple jobs to
# be submitted at once without burdening the head node with multiple DRMAA
# sessions.

# Can run this from a conda environnment created using
# conda create -n drmaatest -c bioconda python=2.7 ruffus drmaa

willfurnass

import numpy as np

myriad_codes = np.array((
    None, None, None, None, "HP", None, None,
    None, None, None, "HT", "HU", None, None,
    None, "HW", "HX", "HY", "HZ", None, None,
    "NA", "NB", "NC", "ND", None, None, None,
    "NF", "NG", "NH", "NJ", "NK", None, None,
    "NL", "NM", "NN", "NO", None, None, None,
    None, "NR", "NS", "NT", "NU", None, None,

willfurnass

--- BibTeX.js.orig	2015-07-03 07:18:37.000000000 +0100
+++ BibTeX.js	2015-08-09 14:21:08.779706944 +0100
@@ -1176,7 +1176,11 @@
 		if(!type) type = "misc";
 		
 		// create a unique citation key
-		var citekey = buildCiteKey(item, citekeys);
+		if (item.shortTitle==''){
+		    var citekey = buildCiteKey(item, citekeys);
+		} else {

willfurnass

function tau_a = shear_stress(D, Q, k_s, T, den)
    %{ Hydraulic shear stress at pipe wall (in Pa).
    %
    % Params:
    % D -- internal diameter (m)
    % Q -- flow (m^3s^-1)
    % k_s -- roughness height (m)
    % T -- temperature; defaults to 10degC)
    % den -- density defaults to 1000kg/m^3
    %